Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MYo	24082	2022-07-03	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.08	0.01	2.225	10.01	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	3.2	0.013	1.40	0.0	0.05	17.77	0.01	2.165	22.80	2.12	6.0	93.9	0.1	-0.97	1.16	0.59	0.69	1.28	10634	1278	2	0	1	0	0	logfile
✔	7KLN	22917	2022-07-07	2020-10-30	3.6	3.54	—	3.7	0.007	0.86	0.0	0.04	15.04	0.00	1.854	25.78	0.48	11.3	88.7	0.0	-1.58	0.44	0.83	2.81	3.7	0.005	0.83	0.0	0.05	17.39	0.00	2.088	23.29	0.46	8.9	91.1	0.0	-1.45	0.55	0.40	0.80	1.64	45564	5748	24	0	0	0	0	logfile
✔	7N77	24222	2022-07-03	2021-06-09	3.2	4.05	3.31	3.7	0.006	1.31	0.0	0.06	12.82	0.01	1.692	9.69	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.004	0.91	0.0	0.04	13.99	0.00	1.946	6.28	0.28	3.1	96.9	0.0	1.32	1.62	0.67	0.80	1.30	7470	1036	1	0	4	2	0	logfile
✔	7KJK	22896	2022-07-03	2020-10-26	3.6	3.53	—	3.8	0.009	0.94	0.0	0.05	14.47	0.01	1.919	27.52	1.45	10.7	89.3	0.0	-3.10	0.50	0.82	2.22	3.8	0.005	0.82	0.0	0.05	17.10	0.01	2.074	21.80	1.20	7.7	92.3	0.0	-1.84	0.94	0.49	0.81	1.75	59088	7740	42	0	0	0	0	logfile
✔	7N75	24220	2022-07-03	2021-06-09	2.9	3.58	2.95	3.3	0.007	0.69	0.0	0.05	12.89	0.01	2.157	7.98	0.00	3.0	97.0	0.0	0.75	0.69	0.82	3.17	3.3	0.003	0.59	0.0	0.04	14.33	0.00	2.210	7.35	0.85	2.2	97.8	0.0	2.51	0.36	0.66	0.81	2.09	7381	1036	1	0	0	3	0	logfile
✔	7N76	24221	2022-07-03	2021-06-09	2.9	3.57	2.96	3.3	0.005	0.64	0.0	0.07	12.16	0.00	2.074	5.87	0.00	3.3	96.7	0.0	0.22	0.70	0.83	3.50	3.3	0.003	0.57	0.0	0.04	13.87	0.00	2.217	5.94	0.84	1.6	98.4	0.0	2.26	1.13	0.69	0.84	2.18	7399	1036	1	0	0	3	0	logfile
✔	7N73	24218	2022-07-03	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.02	0.00	1.850	7.83	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.003	0.84	0.0	0.04	14.36	0.00	2.053	5.87	0.84	2.2	97.8	0.0	1.76	0.32	0.69	0.85	2.56	7866	1036	1	0	6	3	0	logfile
✔	7N72	24217	2022-07-03	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.31	0.0	0.06	13.12	0.01	1.971	6.25	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.003	0.89	0.0	0.04	14.42	0.01	2.033	6.38	0.80	1.9	98.1	0.0	1.76	1.13	0.68	0.83	2.50	7705	1030	1	0	11	5	0	logfile
✔	7S9E	24934	2022-07-03	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.59	0.0	0.04	15.32	0.00	2.245	9.97	0.35	6.4	93.6	0.0	1.00	0.49	0.61	0.81	2.30	10476	1354	4	0	2	0	0	logfile
✔	7S8X	24928	2022-07-03	2021-09-20	3.3	3.00	—	3.3	0.005	0.73	0.0	0.05	14.05	0.00	2.237	11.81	0.00	6.6	93.3	0.1	0.01	0.64	0.83	2.58	3.3	0.006	0.68	0.0	0.04	15.58	0.01	2.168	10.15	0.35	6.1	93.7	0.1	1.09	1.16	0.66	0.84	2.41	10426	1350	2	0	0	0	0	logfile
✔	7NK9	12434	2022-07-04	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.56	0.0	0.04	15.15	0.00	2.114	6.42	0.81	1.0	99.0	0.0	4.02	0.43	0.68	0.87	1.42	18081	1225	14	0	0	0	9158	logfile
✔	7S9B	24931	2022-07-03	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	20.17	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.002	0.67	0.0	0.04	11.96	0.00	2.251	11.40	0.00	6.7	93.3	0.0	0.44	0.44	0.60	0.79	—	10458	1356	2	0	0	0	0	logfile
✔	7F53	31456	2022-07-03	2021-06-21	3.0	3.36	—	3.3	0.008	0.92	0.0	0.06	11.87	0.01	2.230	8.56	0.45	2.1	97.7	0.2	1.14	0.61	0.74	3.38	3.3	0.003	0.58	0.0	0.04	16.26	0.00	2.076	9.36	3.36	1.9	98.1	0.0	1.92	1.26	0.64	0.78	2.79	8153	1034	9	0	1	4	0	logfile
✔	7N78	24223	2022-07-03	2021-06-09	3.0	3.81	3.01	3.5	0.010	0.91	0.0	0.06	12.87	0.01	1.930	8.28	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.003	0.61	0.0	0.04	13.64	0.00	2.029	6.50	0.82	1.6	98.4	0.0	1.70	0.44	0.64	0.77	1.79	7669	1030	1	0	11	3	0	logfile
✔	7N74	24219	2022-07-03	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.58	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.58	0.0	0.04	14.62	0.00	2.122	5.37	1.93	1.4	98.6	0.0	1.71	0.54	0.67	0.81	2.47	7859	1036	1	0	4	3	0	logfile
✔	7P03	13142	2022-07-04	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.003	0.55	0.0	0.04	15.70	0.00	1.925	6.90	0.26	3.9	96.1	0.0	0.90	0.86	0.63	0.77	1.94	21149	1333	1	0	0	0	10498	logfile
✔	7N70	24214	2022-07-03	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.71	0.0	0.05	13.16	0.01	2.109	7.99	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.58	0.0	0.04	15.05	0.00	1.911	7.31	1.61	1.8	98.2	0.0	1.17	0.42	0.63	0.78	2.07	7953	1032	1	0	4	0	0	logfile
✔	7V2A	31639	2022-07-05	2021-08-07	3.4	3.63	—	3.5	0.011	0.94	5.0	0.05	15.34	0.01	1.059	25.71	2.50	9.5	90.2	0.3	-3.95	0.82	0.84	2.51	3.5	0.005	0.71	0.0	0.04	16.06	0.01	2.137	11.40	0.37	5.7	94.1	0.2	-0.91	0.51	0.82	0.85	2.58	28017	3657	12	0	24	0	0	logfile
✔	7SHM	25130	2022-07-03	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.64	0.0	0.04	16.62	0.00	2.170	9.16	0.21	4.0	96.0	0.0	0.26	0.62	0.62	0.83	2.42	9186	1142	4	0	2	0	0	logfile
✔	7MFG	23816	2022-07-04	2021-04-09	3.87	4.47	3.92	4.0	0.002	0.40	0.0	0.04	9.39	0.00	1.993	5.51	0.22	4.2	95.8	0.0	0.42	0.86	0.84	2.35	4.1	0.003	0.68	0.0	0.04	12.94	0.00	2.046	11.10	0.27	5.4	94.6	0.0	-0.23	1.25	0.87	0.86	1.97	17013	2121	18	0	30	0	0	logfile

• ← previous
• Page 2 of 392
• next →