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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VQ8 | 21319 | 2022-05-13 | 2020-02-04 | 3.9 | 4.52 | — | 4.2 | 0.009 | 0.97 | 0.0 | 0.06 | 10.70 | 0.00 | 2.220 | 3.91 | 0.78 | 2.5 | 97.3 | 0.2 | 0.61 | 0.78 | 0.73 | 1.33 | 4.2 | 0.005 | 0.87 | 0.0 | 0.05 | 14.37 | 0.01 | 2.011 | 21.51 | 0.41 | 4.2 | 95.7 | 0.0 | 0.82 | 2.77 | 0.81 | 0.81 | 1.06 | 60714 | 8451 | 35 | 0 | 1 | 0 | 0 | logfile |
✔ | 6WLB | 21820 | 2022-05-16 | 2020-04-19 | 3.5 | 3.89 | — | 3.8 | 0.004 | 0.56 | 0.0 | 0.06 | 13.08 | 0.00 | 2.123 | 6.89 | 0.16 | 4.2 | 95.8 | 0.0 | 1.33 | 0.66 | 0.78 | 1.05 | 3.8 | 0.003 | 0.57 | 0.0 | 0.06 | 14.48 | 0.01 | 2.021 | 7.18 | 0.21 | 5.5 | 94.5 | 0.0 | 1.30 | 1.20 | 0.64 | 0.79 | 1.68 | 34441 | 2160 | 6 | 0 | 15 | 0 | 16960 | logfile |
✔ | 6VQ7 | 21318 | 2022-05-13 | 2020-02-04 | 4.0 | 4.63 | — | 4.2 | 0.009 | 0.98 | 2.0 | 0.06 | 10.86 | 0.01 | 2.219 | 3.92 | 0.61 | 2.5 | 97.3 | 0.2 | 0.65 | 0.79 | 0.72 | — | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 14.28 | 0.00 | 1.949 | 21.56 | 0.46 | 4.3 | 95.7 | 0.0 | 0.70 | 1.47 | 0.82 | 0.81 | — | 62325 | 8454 | 35 | 0 | 2 | 0 | 0 | logfile |
✔ | 6SKi | 10225 | 2022-05-12 | 2019-08-15 | 2.6 | 2.97 | 2.57 | 2.9 | 0.004 | 0.72 | 0.0 | 0.04 | 16.20 | 0.00 | 2.210 | 8.64 | 1.29 | 1.6 | 98.4 | 0.0 | -0.80 | 0.63 | 0.83 | 4.83 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 16.67 | 0.00 | 2.267 | 7.50 | 1.94 | 3.1 | 96.9 | 0.0 | 0.90 | 0.51 | 0.63 | 0.84 | 4.48 | 4434 | 569 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJL | 10218 | 2022-05-14 | 2019-08-13 | 2.6 | 3.00 | 2.64 | 2.9 | 0.013 | 0.87 | 0.0 | 0.05 | 14.60 | 0.01 | 1.985 | 13.14 | 0.05 | 5.7 | 94.1 | 0.2 | -2.82 | 0.70 | 0.83 | 5.22 | 2.9 | 0.007 | 0.83 | 0.0 | 0.05 | 16.74 | 0.00 | 1.806 | 11.86 | 1.64 | 5.2 | 94.8 | 0.0 | -0.57 | 1.14 | 0.71 | 0.85 | 4.26 | 19459 | 2537 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XKL | 22221 | 2022-05-15 | 2020-06-26 | 3.21 | 2.34 | 3.27 | 3.3 | 0.008 | 1.01 | 0.0 | 0.07 | 14.28 | 0.01 | 2.034 | 6.61 | 3.62 | 4.1 | 95.8 | 0.1 | -0.34 | 0.73 | 0.76 | 3.00 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 15.37 | 0.01 | 2.180 | 5.81 | 0.21 | 2.9 | 97.1 | 0.0 | 0.25 | 0.47 | 0.75 | 0.78 | 2.64 | 22895 | 2920 | 17 | 0 | 50 | 0 | 0 | logfile |
✔ | 6TU3 | 10586 | 2022-05-18 | 2020-01-02 | 2.7 | 2.82 | 2.74 | 2.8 | 0.006 | 0.81 | 0.0 | 0.05 | 16.10 | 0.01 | 1.264 | 9.35 | 8.29 | 5.8 | 94.2 | 0.0 | -2.57 | 0.76 | 0.83 | 2.83 | 2.8 | 0.006 | 0.78 | 0.0 | 0.05 | 17.67 | 0.01 | 2.068 | 7.13 | 5.59 | 4.9 | 95.1 | 0.0 | -0.38 | 0.57 | 0.77 | 0.85 | 2.79 | 47002 | 6158 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oQW | 20172 | 2022-05-17 | 2019-04-29 | 3.1 | 3.49 | — | 3.3 | 0.005 | 0.82 | 5.0 | 0.05 | 14.42 | 0.00 | 1.924 | 4.66 | 1.75 | 3.3 | 96.6 | 0.1 | -2.30 | 0.77 | 0.83 | 2.57 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.87 | 0.00 | 1.933 | 8.53 | 0.24 | 3.4 | 96.6 | 0.0 | 0.72 | 0.78 | 0.79 | 0.89 | 2.54 | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6WNR | 21855 | 2022-05-17 | 2020-04-23 | 3.3 | 3.61 | — | 3.4 | 0.005 | 0.96 | 1.0 | 0.06 | 14.34 | 0.01 | 1.869 | 2.24 | 1.44 | 2.8 | 97.2 | 0.0 | -1.29 | 0.77 | 0.85 | 2.75 | 3.4 | 0.003 | 0.72 | 0.0 | 0.04 | 15.71 | 0.00 | 1.932 | 9.30 | 0.16 | 3.1 | 96.9 | 0.0 | 0.76 | 0.79 | 0.79 | 0.88 | 2.10 | 36934 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6PQV | 20454 | 2022-05-17 | 2019-07-10 | 3.3 | 3.54 | — | 3.4 | 0.009 | 0.93 | 1.0 | 0.05 | 14.70 | 0.00 | 1.757 | 4.51 | 2.58 | 3.6 | 96.3 | 0.0 | -2.75 | 0.75 | 0.86 | 3.27 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 15.86 | 0.00 | 1.963 | 8.90 | 0.39 | 2.4 | 97.6 | 0.0 | 0.52 | 1.29 | 0.77 | 0.88 | 2.55 | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6oQR | 20167 | 2022-05-17 | 2019-04-29 | 3.1 | 3.49 | — | 3.3 | 0.010 | 0.90 | 3.0 | 0.05 | 14.75 | 0.00 | 1.753 | 4.66 | 2.50 | 3.5 | 96.5 | 0.0 | -2.47 | 0.77 | 0.86 | 3.56 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 15.90 | 0.00 | 1.967 | 8.61 | 0.23 | 2.9 | 97.1 | 0.0 | 0.53 | 1.27 | 0.79 | 0.89 | 2.47 | 36951 | 4849 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6oQV | 20171 | 2022-05-17 | 2019-04-29 | 3.3 | 3.60 | — | 3.4 | 0.010 | 0.94 | 1.0 | 0.05 | 14.75 | 0.00 | 1.740 | 5.27 | 2.95 | 4.1 | 95.9 | 0.0 | -2.77 | 0.76 | 0.85 | 3.07 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 15.69 | 0.00 | 1.933 | 8.23 | 0.23 | 2.7 | 97.3 | 0.0 | 0.90 | 1.99 | 0.79 | 0.88 | 2.33 | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6WNQ | 21854 | 2022-05-17 | 2020-04-23 | 3.4 | 3.73 | — | 3.5 | 0.012 | 1.16 | 2.0 | 0.06 | 14.48 | 0.01 | 1.781 | 3.91 | 2.16 | 3.0 | 97.0 | 0.0 | -1.62 | 0.76 | 0.85 | 2.50 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 15.97 | 0.00 | 1.879 | 10.02 | 0.21 | 3.1 | 96.9 | 0.0 | 0.89 | 1.72 | 0.77 | 0.87 | 1.97 | 37024 | 4857 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6oQU | 20170 | 2022-05-17 | 2019-04-29 | 3.2 | 3.50 | — | 3.3 | 0.009 | 0.93 | 2.0 | 0.05 | 14.95 | 0.00 | 1.718 | 4.70 | 2.92 | 3.5 | 96.5 | 0.0 | -2.70 | 0.75 | 0.86 | 3.08 | 3.3 | 0.005 | 0.72 | 0.0 | 0.04 | 15.80 | 0.01 | 1.860 | 8.70 | 0.39 | 2.8 | 97.2 | 0.0 | 0.51 | 0.66 | 0.78 | 0.89 | 2.35 | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6VoA | 21259 | 2022-05-15 | 2020-01-30 | 4.0 | 4.24 | — | 4.1 | 0.004 | 0.83 | 8.0 | 0.06 | 14.09 | 0.00 | 1.107 | 13.97 | 1.57 | 8.8 | 90.7 | 0.5 | -3.28 | 0.69 | 0.58 | — | 4.1 | 0.007 | 0.80 | 0.0 | 0.04 | 16.17 | 0.00 | 2.188 | 14.25 | 0.67 | 7.9 | 92.1 | 0.1 | -1.17 | 2.40 | 0.77 | 0.69 | — | 26824 | 3958 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oQS | 20168 | 2022-05-17 | 2019-04-29 | 3.3 | 3.55 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 14.37 | 0.00 | 1.849 | 5.70 | 1.80 | 2.5 | 97.5 | 0.0 | -2.20 | 0.76 | 0.86 | 3.40 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.90 | 0.00 | 1.977 | 8.82 | 0.23 | 2.5 | 97.5 | 0.0 | 0.61 | 1.67 | 0.78 | 0.89 | 2.45 | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6oQT | 20169 | 2022-05-17 | 2019-04-29 | 3.1 | 3.48 | — | 3.3 | 0.008 | 0.86 | 1.0 | 0.05 | 14.36 | 0.00 | 1.781 | 3.86 | 1.96 | 2.9 | 97.1 | 0.0 | -2.11 | 0.78 | 0.88 | 3.44 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.72 | 0.00 | 1.967 | 7.01 | 0.34 | 2.4 | 97.6 | 0.0 | 0.89 | 1.24 | 0.79 | 0.89 | 2.51 | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6ZVH | 11456 | 2022-05-15 | 2020-07-24 | 2.9 | 3.10 | 2.84 | 2.8 | 0.008 | 0.95 | 1.0 | 0.05 | 15.50 | 0.01 | 1.992 | 5.03 | 0.00 | 4.9 | 94.9 | 0.2 | -2.07 | 0.54 | 0.88 | 3.23 | 2.8 | 0.006 | 0.72 | 0.0 | 0.04 | 16.24 | 0.01 | 1.852 | 9.01 | 2.15 | 8.5 | 91.4 | 0.2 | -0.92 | 1.10 | 0.54 | 0.89 | 2.84 | 79014 | 5074 | 43 | 1815 | 33 | 0 | 0 | logfile |
✔ | 6SK0 | 10219 | 2022-05-12 | 2019-08-14 | 2.3 | 2.30 | 2.11 | 2.2 | 0.008 | 0.74 | 0.0 | 0.05 | 15.85 | 0.00 | 2.202 | 9.23 | 0.97 | 3.3 | 96.7 | 0.0 | -1.30 | 0.70 | 0.83 | 6.89 | 2.2 | 0.005 | 0.72 | 0.0 | 0.05 | 17.22 | 0.00 | 2.164 | 10.52 | 0.65 | 4.5 | 95.5 | 0.0 | -1.28 | 1.50 | 0.80 | 0.90 | 6.82 | 5826 | 792 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KPH | 0746 | 2022-05-13 | 2019-08-15 | 2.41 | 3.45 | — | 3.2 | 0.014 | 1.01 | 0.0 | 0.15 | 14.01 | 0.00 | 1.838 | 8.27 | 0.00 | 8.5 | 91.5 | 0.0 | -4.25 | 0.81 | 0.85 | 4.19 | 3.2 | 0.004 | 0.73 | 0.0 | 0.15 | 15.62 | 0.00 | 1.777 | 7.89 | 1.06 | 4.1 | 95.9 | 0.0 | 0.19 | 0.81 | 0.80 | 0.86 | 4.21 | 62832 | 3936 | 24 | 0 | 48 | 0 | 31212 | logfile |