Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D65	27217	2023-11-15	2022-06-06	3.47	3.58	3.37	3.5	0.010	1.03	0.0	0.07	15.70	0.01	1.871	9.16	0.00	4.9	95.1	0.0	-3.22	0.69	0.83	3.43	3.6	0.003	0.52	0.0	0.04	14.74	0.00	2.279	3.72	0.07	3.2	96.8	0.0	0.33	0.49	0.71	0.86	3.32	12780	1535	10	0	5	0	0	logfile
✔	8G6K	29772	2023-11-14	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6oFJ	20047	2023-11-15	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	7o0U	12679	2023-11-14	2021-03-27	2.35	2.42	—	2.3	0.018	4.37	0.0	0.06	24.75	0.01	2.121	1.73	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.70	0.0	0.03	21.23	0.00	1.834	7.34	1.15	0.9	99.1	0.0	4.12	2.04	0.84	0.89	4.24	55758	4972	236	0	320	491	0	logfile
✔	7Ki1	22883	2023-11-15	2020-10-22	2.5	2.57	2.46	2.6	0.013	0.93	0.0	0.06	15.54	0.00	2.257	8.41	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.003	0.55	0.0	0.04	16.94	0.00	2.118	6.02	1.85	2.1	97.9	0.0	1.06	0.52	0.65	0.84	3.62	10265	1285	11	0	1	73	0	logfile
✔	7EZH	31387	2023-11-14	2021-06-01	3.2	2.28	—	2.1	0.004	0.68	1.0	0.05	12.75	0.01	2.278	2.69	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.69	0.0	0.04	15.50	0.00	2.128	12.18	0.64	2.7	97.3	0.0	0.92	1.61	0.75	0.76	2.13	8838	1150	6	0	0	0	0	logfile
✔	7MTE	23984	2023-11-17	2021-05-13	3.2	2.75	3.06	3.1	0.005	0.82	0.0	0.06	9.37	0.01	2.298	2.16	0.04	4.5	95.5	0.0	-3.17	0.74	0.84	3.68	3.0	0.003	0.60	0.0	0.05	13.69	0.00	2.184	4.41	0.31	5.0	95.0	0.0	-0.50	1.38	0.76	0.87	3.17	20612	2568	20	0	42	0	0	logfile
✔	7NPU	12521	2023-11-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	8DE9	27388	2023-11-13	2022-06-20	3.4	4.08	3.48	3.9	0.005	1.12	0.0	0.06	13.80	0.01	2.309	8.02	0.23	3.3	96.7	0.0	2.27	0.60	0.77	1.86	3.9	0.004	1.02	0.0	0.05	16.96	0.00	2.099	16.87	0.23	3.9	95.9	0.2	1.60	2.77	0.55	0.77	1.14	4115	517	3	0	4	0	0	logfile
✔	7Ai7	11793	2023-11-15	2020-09-26	3.9	4.03	3.96	3.7	0.015	1.98	2.0	0.10	17.91	0.01	2.425	3.96	0.99	4.0	96.0	0.0	-2.46	0.87	0.75	0.82	3.7	0.005	0.77	0.0	0.04	18.37	0.00	2.071	16.01	0.33	3.4	96.6	0.0	-0.15	1.38	0.89	0.81	0.76	12085	1460	6	27	2	0	0	logfile
✔	6XM5	22256	2023-11-19	2020-06-29	3.1	3.30	3.13	3.2	0.008	0.86	0.0	0.06	14.77	0.01	2.275	3.77	0.51	6.8	93.2	0.0	-4.06	0.82	0.88	3.22	3.2	0.005	0.64	0.0	0.05	15.55	0.00	2.167	7.67	0.33	6.2	93.8	0.0	-1.59	0.33	0.82	0.90	2.68	25393	3149	22	0	58	0	0	logfile
✔	7VoJ	32050	2023-11-13	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.002	0.56	0.0	0.03	16.62	0.00	1.924	4.63	2.02	2.9	97.1	0.0	3.11	2.16	0.60	0.82	1.75	6318	800	4	0	6	0	0	logfile
✔	8DE8	27387	2023-11-13	2022-06-20	2.82	3.75	2.73	3.6	0.006	1.63	0.0	0.05	17.89	0.01	2.200	6.01	0.43	2.6	97.4	0.0	2.28	0.67	0.81	1.66	3.6	0.004	0.91	0.0	0.04	18.27	0.00	2.086	9.06	2.59	3.1	96.5	0.4	3.33	1.48	0.56	0.78	1.92	4498	552	4	0	8	0	0	logfile
✔	6o84	0650	2023-11-13	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.004	0.78	0.0	0.04	16.35	0.00	2.131	8.82	0.16	7.3	92.7	0.0	1.35	1.28	0.61	0.82	2.66	6224	712	2	0	118	0	0	logfile
✔	8D63	27215	2023-11-15	2022-06-06	3.14	3.26	3.09	3.2	0.009	0.99	0.0	0.06	15.75	0.01	2.290	9.81	0.36	5.0	94.7	0.3	-1.01	0.65	0.81	4.38	3.2	0.005	0.55	0.0	0.05	15.24	0.00	2.138	5.24	0.07	3.9	96.1	0.0	0.68	0.32	0.67	0.84	4.18	12785	1535	10	0	5	0	0	logfile
✔	7o0W	12681	2023-11-14	2021-03-27	2.47	2.42	—	2.3	0.018	4.34	0.0	0.06	24.63	0.01	2.010	1.98	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.68	0.0	0.03	21.17	0.00	1.957	7.86	0.98	0.9	99.1	0.0	3.96	1.12	0.83	0.88	3.91	56476	5076	236	0	320	406	0	logfile
✔	7S7B	24882	2023-11-18	2021-09-15	4.06	3.82	—	3.6	0.004	0.46	0.0	0.04	10.74	0.00	1.963	8.58	1.54	7.9	92.1	0.0	0.42	0.81	0.80	—	3.6	0.004	0.63	0.0	0.04	12.64	0.00	2.184	10.11	0.04	6.2	93.8	0.0	0.46	0.62	0.82	0.81	—	22217	2709	10	22	2	0	0	logfile
✔	6G18	4337	2023-11-20	2018-03-20	3.6	3.67	3.55	3.6	0.007	1.28	30.0	0.10	18.66	0.01	1.434	5.29	7.67	5.8	93.4	0.8	-2.21	0.83	0.86	1.68	3.6	0.006	0.75	0.0	0.04	17.99	0.01	1.999	13.79	0.77	5.7	94.2	0.1	-0.55	1.36	0.83	0.84	1.64	83819	6060	37	1658	2	0	0	logfile
✔	6QX3	4661	2023-11-18	2019-03-07	3.79	3.94	—	3.9	0.007	0.77	0.0	0.04	14.67	0.00	2.050	4.45	0.00	9.7	90.3	0.0	-5.16	0.74	0.79	2.40	3.8	0.004	0.62	0.0	0.04	16.40	0.00	1.988	9.64	0.17	10.1	89.9	0.0	-2.38	0.72	0.76	0.80	2.53	21587	1337	6	14	0	0	10646	logfile
✔	6XPD	22285	2023-11-13	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.57	0.00	1.952	11.43	0.78	5.4	94.6	0.0	1.02	1.38	0.60	0.83	2.03	4622	606	4	0	4	0	0	logfile

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