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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8D65 | 27217 | 2023-11-15 | 2022-06-06 | 3.47 | 3.58 | 3.37 | 3.5 | 0.010 | 1.03 | 0.0 | 0.07 | 15.70 | 0.01 | 1.871 | 9.16 | 0.00 | 4.9 | 95.1 | 0.0 | -3.22 | 0.69 | 0.83 | 3.43 | 3.6 | 0.003 | 0.52 | 0.0 | 0.04 | 14.74 | 0.00 | 2.279 | 3.72 | 0.07 | 3.2 | 96.8 | 0.0 | 0.33 | 0.49 | 0.71 | 0.86 | 3.32 | 12780 | 1535 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 8G6K | 29772 | 2023-11-14 | 2023-02-15 | 3.6 | 3.71 | 3.52 | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 4.19 | 0.00 | 2.523 | 0.20 | 0.00 | 2.7 | 97.3 | 0.0 | 1.65 | 0.54 | 0.71 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 4.50 | 0.00 | 2.284 | 2.64 | 0.00 | 6.7 | 93.3 | 0.0 | 0.05 | 1.47 | 0.54 | 0.74 | — | 9388 | 1379 | 7 | 0 | 0 | 0 | 2576 | logfile |
✔ | 6oFJ | 20047 | 2023-11-15 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.002 | 10.00 | 0.00 | 8.7 | 91.3 | 0.0 | -1.93 | 1.22 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 7o0U | 12679 | 2023-11-14 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.018 | 4.37 | 0.0 | 0.06 | 24.75 | 0.01 | 2.121 | 1.73 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.3 | 0.003 | 1.70 | 0.0 | 0.03 | 21.23 | 0.00 | 1.834 | 7.34 | 1.15 | 0.9 | 99.1 | 0.0 | 4.12 | 2.04 | 0.84 | 0.89 | 4.24 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 7Ki1 | 22883 | 2023-11-15 | 2020-10-22 | 2.5 | 2.57 | 2.46 | 2.6 | 0.013 | 0.93 | 0.0 | 0.06 | 15.54 | 0.00 | 2.257 | 8.41 | 0.28 | 3.5 | 96.5 | 0.0 | -1.64 | 0.64 | 0.81 | 3.96 | 2.6 | 0.003 | 0.55 | 0.0 | 0.04 | 16.94 | 0.00 | 2.118 | 6.02 | 1.85 | 2.1 | 97.9 | 0.0 | 1.06 | 0.52 | 0.65 | 0.84 | 3.62 | 10265 | 1285 | 11 | 0 | 1 | 73 | 0 | logfile |
✔ | 7EZH | 31387 | 2023-11-14 | 2021-06-01 | 3.2 | 2.28 | — | 2.1 | 0.004 | 0.68 | 1.0 | 0.05 | 12.75 | 0.01 | 2.278 | 2.69 | 0.74 | 4.7 | 95.2 | 0.1 | -1.38 | 0.73 | 0.72 | 2.97 | 2.1 | 0.003 | 0.69 | 0.0 | 0.04 | 15.50 | 0.00 | 2.128 | 12.18 | 0.64 | 2.7 | 97.3 | 0.0 | 0.92 | 1.61 | 0.75 | 0.76 | 2.13 | 8838 | 1150 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MTE | 23984 | 2023-11-17 | 2021-05-13 | 3.2 | 2.75 | 3.06 | 3.1 | 0.005 | 0.82 | 0.0 | 0.06 | 9.37 | 0.01 | 2.298 | 2.16 | 0.04 | 4.5 | 95.5 | 0.0 | -3.17 | 0.74 | 0.84 | 3.68 | 3.0 | 0.003 | 0.60 | 0.0 | 0.05 | 13.69 | 0.00 | 2.184 | 4.41 | 0.31 | 5.0 | 95.0 | 0.0 | -0.50 | 1.38 | 0.76 | 0.87 | 3.17 | 20612 | 2568 | 20 | 0 | 42 | 0 | 0 | logfile |
✔ | 7NPU | 12521 | 2023-11-17 | 2021-02-28 | 4.48 | 4.74 | 4.43 | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 11.87 | 0.01 | 2.086 | 1.37 | 0.37 | 1.8 | 98.1 | 0.1 | -0.61 | 0.66 | 0.68 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.55 | 0.00 | 1.902 | 8.02 | 0.00 | 2.8 | 97.2 | 0.0 | 1.44 | 3.28 | 0.69 | 0.76 | — | 126727 | 8230 | 24 | 0 | 0 | 0 | 64397 | logfile |
✔ | 8DE9 | 27388 | 2023-11-13 | 2022-06-20 | 3.4 | 4.08 | 3.48 | 3.9 | 0.005 | 1.12 | 0.0 | 0.06 | 13.80 | 0.01 | 2.309 | 8.02 | 0.23 | 3.3 | 96.7 | 0.0 | 2.27 | 0.60 | 0.77 | 1.86 | 3.9 | 0.004 | 1.02 | 0.0 | 0.05 | 16.96 | 0.00 | 2.099 | 16.87 | 0.23 | 3.9 | 95.9 | 0.2 | 1.60 | 2.77 | 0.55 | 0.77 | 1.14 | 4115 | 517 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7Ai7 | 11793 | 2023-11-15 | 2020-09-26 | 3.9 | 4.03 | 3.96 | 3.7 | 0.015 | 1.98 | 2.0 | 0.10 | 17.91 | 0.01 | 2.425 | 3.96 | 0.99 | 4.0 | 96.0 | 0.0 | -2.46 | 0.87 | 0.75 | 0.82 | 3.7 | 0.005 | 0.77 | 0.0 | 0.04 | 18.37 | 0.00 | 2.071 | 16.01 | 0.33 | 3.4 | 96.6 | 0.0 | -0.15 | 1.38 | 0.89 | 0.81 | 0.76 | 12085 | 1460 | 6 | 27 | 2 | 0 | 0 | logfile |
✔ | 6XM5 | 22256 | 2023-11-19 | 2020-06-29 | 3.1 | 3.30 | 3.13 | 3.2 | 0.008 | 0.86 | 0.0 | 0.06 | 14.77 | 0.01 | 2.275 | 3.77 | 0.51 | 6.8 | 93.2 | 0.0 | -4.06 | 0.82 | 0.88 | 3.22 | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.55 | 0.00 | 2.167 | 7.67 | 0.33 | 6.2 | 93.8 | 0.0 | -1.59 | 0.33 | 0.82 | 0.90 | 2.68 | 25393 | 3149 | 22 | 0 | 58 | 0 | 0 | logfile |
✔ | 7VoJ | 32050 | 2023-11-13 | 2021-10-14 | 3.0 | 3.21 | — | 3.3 | 0.008 | 1.01 | 0.0 | 0.06 | 13.59 | 0.01 | 2.061 | 7.62 | 1.73 | 3.3 | 96.5 | 0.3 | -2.46 | 0.65 | 0.83 | 2.35 | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.62 | 0.00 | 1.924 | 4.63 | 2.02 | 2.9 | 97.1 | 0.0 | 3.11 | 2.16 | 0.60 | 0.82 | 1.75 | 6318 | 800 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8DE8 | 27387 | 2023-11-13 | 2022-06-20 | 2.82 | 3.75 | 2.73 | 3.6 | 0.006 | 1.63 | 0.0 | 0.05 | 17.89 | 0.01 | 2.200 | 6.01 | 0.43 | 2.6 | 97.4 | 0.0 | 2.28 | 0.67 | 0.81 | 1.66 | 3.6 | 0.004 | 0.91 | 0.0 | 0.04 | 18.27 | 0.00 | 2.086 | 9.06 | 2.59 | 3.1 | 96.5 | 0.4 | 3.33 | 1.48 | 0.56 | 0.78 | 1.92 | 4498 | 552 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6o84 | 0650 | 2023-11-13 | 2019-03-08 | 3.92 | 4.04 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.01 | 0.00 | 2.350 | 2.97 | 0.64 | 4.9 | 95.1 | 0.0 | -5.68 | 0.60 | 0.82 | 2.21 | 4.0 | 0.004 | 0.78 | 0.0 | 0.04 | 16.35 | 0.00 | 2.131 | 8.82 | 0.16 | 7.3 | 92.7 | 0.0 | 1.35 | 1.28 | 0.61 | 0.82 | 2.66 | 6224 | 712 | 2 | 0 | 118 | 0 | 0 | logfile |
✔ | 8D63 | 27215 | 2023-11-15 | 2022-06-06 | 3.14 | 3.26 | 3.09 | 3.2 | 0.009 | 0.99 | 0.0 | 0.06 | 15.75 | 0.01 | 2.290 | 9.81 | 0.36 | 5.0 | 94.7 | 0.3 | -1.01 | 0.65 | 0.81 | 4.38 | 3.2 | 0.005 | 0.55 | 0.0 | 0.05 | 15.24 | 0.00 | 2.138 | 5.24 | 0.07 | 3.9 | 96.1 | 0.0 | 0.68 | 0.32 | 0.67 | 0.84 | 4.18 | 12785 | 1535 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7o0W | 12681 | 2023-11-14 | 2021-03-27 | 2.47 | 2.42 | — | 2.3 | 0.018 | 4.34 | 0.0 | 0.06 | 24.63 | 0.01 | 2.010 | 1.98 | 0.28 | 1.4 | 98.6 | 0.0 | 1.25 | 0.82 | 0.86 | 5.37 | 2.3 | 0.003 | 1.68 | 0.0 | 0.03 | 21.17 | 0.00 | 1.957 | 7.86 | 0.98 | 0.9 | 99.1 | 0.0 | 3.96 | 1.12 | 0.83 | 0.88 | 3.91 | 56476 | 5076 | 236 | 0 | 320 | 406 | 0 | logfile |
✔ | 7S7B | 24882 | 2023-11-18 | 2021-09-15 | 4.06 | 3.82 | — | 3.6 | 0.004 | 0.46 | 0.0 | 0.04 | 10.74 | 0.00 | 1.963 | 8.58 | 1.54 | 7.9 | 92.1 | 0.0 | 0.42 | 0.81 | 0.80 | — | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.64 | 0.00 | 2.184 | 10.11 | 0.04 | 6.2 | 93.8 | 0.0 | 0.46 | 0.62 | 0.82 | 0.81 | — | 22217 | 2709 | 10 | 22 | 2 | 0 | 0 | logfile |
✔ | 6G18 | 4337 | 2023-11-20 | 2018-03-20 | 3.6 | 3.67 | 3.55 | 3.6 | 0.007 | 1.28 | 30.0 | 0.10 | 18.66 | 0.01 | 1.434 | 5.29 | 7.67 | 5.8 | 93.4 | 0.8 | -2.21 | 0.83 | 0.86 | 1.68 | 3.6 | 0.006 | 0.75 | 0.0 | 0.04 | 17.99 | 0.01 | 1.999 | 13.79 | 0.77 | 5.7 | 94.2 | 0.1 | -0.55 | 1.36 | 0.83 | 0.84 | 1.64 | 83819 | 6060 | 37 | 1658 | 2 | 0 | 0 | logfile |
✔ | 6QX3 | 4661 | 2023-11-18 | 2019-03-07 | 3.79 | 3.94 | — | 3.9 | 0.007 | 0.77 | 0.0 | 0.04 | 14.67 | 0.00 | 2.050 | 4.45 | 0.00 | 9.7 | 90.3 | 0.0 | -5.16 | 0.74 | 0.79 | 2.40 | 3.8 | 0.004 | 0.62 | 0.0 | 0.04 | 16.40 | 0.00 | 1.988 | 9.64 | 0.17 | 10.1 | 89.9 | 0.0 | -2.38 | 0.72 | 0.76 | 0.80 | 2.53 | 21587 | 1337 | 6 | 14 | 0 | 0 | 10646 | logfile |
✔ | 6XPD | 22285 | 2023-11-13 | 2020-07-08 | 3.8 | 3.62 | — | 3.7 | 0.007 | 0.77 | 0.0 | 0.04 | 14.37 | 0.00 | 1.461 | 13.89 | 0.20 | 9.4 | 90.6 | 0.0 | -3.83 | 0.60 | 0.85 | 1.65 | 3.6 | 0.004 | 0.74 | 0.0 | 0.04 | 16.57 | 0.00 | 1.952 | 11.43 | 0.78 | 5.4 | 94.6 | 0.0 | 1.02 | 1.38 | 0.60 | 0.83 | 2.03 | 4622 | 606 | 4 | 0 | 4 | 0 | 0 | logfile |