Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5X8R	6710	2021-06-05	2017-03-03	3.7	3.88	—	3.8	0.012	1.32	8.0	0.06	14.80	0.01	1.255	12.03	1.03	12.1	86.8	1.1	-4.16	0.77	0.74	1.22	3.7	0.006	0.84	0.0	0.04	16.33	0.01	2.049	21.28	1.38	13.7	85.9	0.3	-2.40	2.02	0.81	0.84	1.10	55412	2969	26	1480	0	0	0	logfile
✔	5BK4	9400	2021-06-05	2017-09-12	3.9	4.14	—	4.1	0.008	1.25	0.0	0.06	14.44	0.01	2.234	5.14	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	4.0	0.003	0.79	0.0	0.04	16.91	0.01	2.078	10.05	0.41	9.3	90.7	0.0	-1.40	0.97	0.81	0.80	1.41	62482	7636	22	120	8	0	0	logfile
✔	6T8H	10401	2021-06-02	2019-10-24	3.77	3.90	3.76	3.8	0.012	1.09	1.0	0.07	11.25	0.01	1.696	38.53	0.94	8.6	91.3	0.1	-3.78	0.81	0.82	2.42	3.8	0.004	0.65	0.0	0.05	16.25	0.00	1.852	55.13	0.39	7.0	93.0	0.0	-0.32	1.27	0.82	0.82	2.09	19398	2346	9	34	5	0	33	logfile
✔	6RiC	4888	2021-06-03	2019-04-23	2.8	2.91	2.91	2.8	0.006	0.76	0.0	0.05	14.01	0.01	2.068	5.10	0.03	3.5	96.5	0.0	-4.16	0.76	0.83	4.00	2.9	0.004	0.63	0.0	0.04	16.59	0.00	2.091	10.83	1.61	3.0	97.0	0.0	-0.01	1.01	0.82	0.88	3.33	29677	3663	12	0	5	0	0	logfile
✔	6RQC	4980	2021-06-04	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.00	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.004	0.70	0.0	0.04	16.73	0.00	1.862	16.39	0.00	10.7	89.3	0.0	-2.08	3.27	0.79	0.70	—	105223	6174	23	176	15	0	51978	logfile
✔	5WC3	8795	2021-06-06	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.90	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	3.5	0.003	0.64	0.0	0.05	11.99	0.00	2.159	7.13	0.00	10.2	89.1	0.7	-1.80	1.61	0.77	0.73	1.39	65880	4170	30	0	0	0	33390	logfile
✔	6KLX	0721	2021-06-03	2019-07-30	2.9	3.09	—	3.0	0.008	0.69	0.0	0.05	13.80	0.01	2.177	6.64	0.13	6.8	93.2	0.0	-3.59	0.73	0.85	4.20	3.0	0.002	0.51	0.0	0.04	15.93	0.00	2.192	6.81	1.79	5.1	94.9	0.0	-0.86	1.18	0.75	0.86	3.80	20055	2576	14	0	14	0	0	logfile
✔	5H64	6668	2021-06-05	2016-11-10	4.4	3.65	—	3.4	0.011	1.57	0.0	0.07	11.97	0.01	1.144	69.67	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	3.4	0.011	0.98	0.0	0.05	12.96	0.01	2.064	26.73	0.57	13.2	85.9	0.9	-2.21	1.10	0.85	0.71	—	45252	6430	6	0	0	0	0	logfile
✔	5G04	3385	2021-06-06	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.35	13.63	6.3	91.5	2.3	-2.36	0.78	0.65	0.91	3.8	0.008	0.90	0.0	0.04	18.30	0.01	2.017	18.73	0.57	5.8	93.7	0.5	0.16	1.76	0.83	0.77	0.63	65481	8322	22	0	3	0	0	logfile
✔	6KLo	0713	2021-06-03	2019-07-30	2.8	3.01	—	2.9	0.005	0.60	0.0	0.05	13.06	0.00	2.185	5.56	0.12	5.9	94.1	0.0	-3.14	0.77	0.87	4.15	2.9	0.003	0.56	0.0	0.05	15.89	0.00	2.192	5.36	1.04	6.2	93.8	0.0	-0.75	0.40	0.76	0.88	3.88	23275	2972	15	0	14	0	0	logfile
✔	6i1Y	0327	2021-06-05	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	74.35	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.003	0.69	0.0	0.05	15.88	0.01	2.153	14.67	0.27	5.4	94.4	0.2	-1.51	1.92	0.78	0.79	1.73	56520	7440	15	0	0	0	0	logfile
✔	6QLD	4579	2021-06-03	2019-01-31	4.15	4.29	—	4.1	0.004	0.86	1.0	0.05	21.51	0.01	2.289	5.01	0.25	5.1	94.8	0.2	-3.52	0.83	0.76	—	4.1	0.004	0.66	0.0	0.04	20.76	0.00	2.186	13.89	0.04	6.0	94.0	0.0	0.94	1.33	0.83	0.76	—	29086	3157	22	248	0	0	0	logfile
✔	6UGM	20765	2021-06-04	2019-09-26	3.7	3.82	—	3.7	0.010	1.29	16.0	0.07	24.13	0.01	1.984	8.22	1.24	6.5	93.4	0.1	-5.54	0.75	0.74	1.35	3.7	0.004	0.65	0.0	0.04	24.26	0.00	2.121	13.98	0.26	7.6	92.4	0.0	-2.50	0.57	0.75	0.73	0.98	23609	2205	19	292	2	0	0	logfile
✔	6RKU	4910	2021-06-02	2019-04-30	4.0	4.41	—	4.1	0.018	1.76	0.0	0.15	13.42	0.01	2.215	5.93	0.00	7.7	92.3	0.0	-2.01	0.89	0.85	—	4.1	0.005	1.43	0.0	0.04	15.84	0.00	2.052	9.63	0.33	6.0	94.0	0.0	0.18	2.79	0.89	0.86	—	15526	1784	9	64	1	0	0	logfile
✔	6QNo	4598	2021-06-02	2019-02-11	4.38	4.65	—	4.4	0.010	1.25	0.0	0.07	11.68	0.01	2.227	11.85	1.65	11.6	88.4	0.0	-3.96	0.80	0.75	—	4.4	0.004	0.76	0.0	0.04	12.51	0.00	2.040	18.07	0.26	8.7	91.3	0.0	-1.36	0.88	0.80	0.74	—	10429	1332	6	0	3	0	0	logfile
✔	6K7G	9931	2021-06-02	2019-06-07	3.3	3.42	3.12	3.4	0.030	1.47	0.0	0.18	15.60	0.01	2.262	5.61	0.43	9.1	90.7	0.2	-4.12	0.61	0.85	3.53	3.4	0.004	0.86	0.0	0.06	16.72	0.01	1.351	12.69	0.00	8.1	91.8	0.1	-2.75	0.35	0.70	0.89	3.23	10569	1313	2	0	6	0	0	logfile
✔	6E9Z	9021	2021-06-04	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.16	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.61	0.0	0.03	16.06	0.00	1.890	8.31	0.31	2.9	97.1	0.0	2.85	1.61	0.58	0.81	1.32	32652	2025	9	0	0	0	16830	logfile
✔	6LHT	0897	2021-06-02	2019-12-10	3.67	3.78	—	3.7	0.007	1.13	4.0	0.07	15.34	0.01	1.810	9.36	2.05	6.7	92.7	0.5	-4.42	0.44	0.82	2.88	3.7	0.005	0.81	0.0	0.05	16.47	0.01	2.062	12.33	0.60	9.1	90.7	0.2	-1.75	0.70	0.46	0.83	2.79	10754	1329	12	0	5	0	0	logfile
✔	6K7H	9932	2021-06-02	2019-06-07	3.22	3.37	3.03	3.3	0.029	1.41	0.0	0.18	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.006	0.97	0.0	0.06	16.64	0.01	2.220	12.15	0.52	6.6	93.4	0.0	-2.84	0.32	0.69	0.89	3.14	10577	1312	2	0	6	0	0	logfile
✔	6EU1	3956	2021-06-04	2017-10-27	3.4	3.40	—	6.6	0.005	1.14	0.0	0.06	12.93	0.01	1.732	6.51	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.4	0.005	0.97	0.0	0.05	16.90	0.01	2.081	14.94	0.48	14.5	85.3	0.2	-3.42	2.07	0.71	0.73	0.92	40547	5012	24	43	7	0	0	logfile

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