Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CH6	30369	2023-09-29	2020-07-05	3.4	3.53	—	3.5	0.008	0.82	0.0	0.13	15.18	0.01	2.077	17.44	12.88	9.6	90.4	0.0	-4.53	0.71	0.84	2.62	3.5	0.005	0.79	0.0	0.05	15.88	0.01	2.130	16.17	0.20	6.0	94.0	0.0	-1.85	1.25	0.70	0.84	1.85	9260	1214	8	0	2	0	0	logfile
✔	6W8o	21576	2023-09-28	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.04	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.1	0.005	0.97	0.0	0.05	17.25	0.00	2.031	19.32	0.75	6.9	93.1	0.0	-0.03	1.18	0.55	0.78	1.50	6332	832	2	0	0	0	0	logfile
✔	7Y9U	33692	2023-09-28	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.27	2.0	0.06	9.98	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.63	0.0	0.04	13.73	0.00	2.158	4.60	0.24	3.6	96.4	0.0	-1.82	0.62	0.59	0.84	2.56	7748	988	6	0	2	0	0	logfile
✔	6XLD	22240	2023-09-30	2020-06-28	3.66	3.78	—	3.7	0.003	0.51	0.0	0.04	9.94	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.003	0.63	0.0	0.04	14.73	0.00	1.891	11.72	0.50	3.5	96.5	0.0	-0.41	1.41	0.80	0.81	2.54	10992	1349	5	0	4	0	0	logfile
✔	7XK8	33247	2023-09-28	2022-04-19	3.3	3.49	3.12	3.4	0.003	0.48	0.0	0.04	11.62	0.00	2.248	7.78	0.00	3.1	96.9	0.0	-1.25	0.55	0.65	0.38	3.5	0.006	0.74	0.0	0.05	14.76	0.00	2.041	16.39	1.34	4.6	95.4	0.0	0.19	0.68	0.59	0.73	0.65	6796	923	5	0	1	0	0	logfile
✔	7DoK	30795	2023-09-30	2020-12-14	2.73	2.84	—	2.9	0.009	1.01	0.0	0.07	13.35	0.01	1.695	5.72	0.60	2.4	97.6	0.0	-2.40	0.71	0.85	3.23	2.9	0.003	0.55	0.0	0.04	14.96	0.00	2.047	6.97	1.37	1.6	98.4	0.0	0.34	0.45	0.70	0.86	3.02	11534	1323	8	44	9	2	0	logfile
✔	7WX3	32875	2023-09-29	2022-02-14	3.1	3.61	3.03	3.5	0.011	0.91	0.0	0.05	16.74	0.00	2.150	6.65	3.70	4.6	95.4	0.0	-3.51	0.57	0.78	1.78	3.5	0.003	0.63	0.0	0.04	16.88	0.00	2.057	6.23	0.11	1.6	98.4	0.0	-0.39	1.57	0.56	0.77	0.98	8472	1086	12	0	8	0	0	logfile
✔	8B8J	15914	2023-09-30	2022-10-04	2.96	3.60	2.92	3.4	0.003	0.46	0.0	0.04	9.83	0.00	2.211	6.94	1.25	2.4	97.6	0.0	2.21	0.60	0.76	1.84	3.4	0.003	0.67	0.0	0.04	13.51	0.00	2.161	10.37	2.59	2.5	97.5	0.0	1.75	1.48	0.63	0.80	2.24	11686	1418	4	0	6	0	0	logfile
✔	8HND	34911	2023-09-27	2022-12-07	3.19	3.62	3.32	3.6	0.008	1.22	4.0	0.07	12.21	0.02	2.231	14.77	0.65	4.5	95.5	0.0	-2.74	0.50	0.73	2.07	3.6	0.004	0.63	0.0	0.04	14.97	0.00	2.206	7.90	0.00	3.6	96.4	0.0	1.02	1.07	0.44	0.69	1.97	4370	560	3	0	4	0	0	logfile
✔	7F1R	31423	2023-09-28	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	8.07	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.71	0.0	0.04	15.11	0.00	2.161	13.28	3.82	3.9	96.1	0.0	0.37	1.26	0.63	0.80	2.53	6621	894	4	0	0	0	0	logfile
✔	7K18	22621	2023-09-29	2020-09-07	3.3	3.43	—	3.4	0.006	1.09	1.0	0.05	18.25	0.01	1.936	21.56	3.41	7.9	91.8	0.3	-3.42	0.53	0.72	1.76	3.4	0.004	0.78	0.0	0.04	17.71	0.00	2.082	13.83	0.30	6.9	93.1	0.1	-0.22	0.67	0.52	0.75	1.49	9749	1195	6	0	19	0	0	logfile
✔	6Li3	0902	2023-09-28	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.66	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.6	0.003	0.65	0.0	0.04	16.65	0.00	2.150	9.72	0.33	3.8	96.2	0.0	-0.12	1.35	0.59	0.77	1.61	8289	1045	5	0	0	0	0	logfile
✔	7YDQ	33756	2023-09-28	2022-07-04	4.04	4.32	4.02	4.4	0.011	0.82	0.0	0.04	17.28	0.01	2.262	10.34	0.57	3.2	96.8	0.0	1.21	0.46	0.63	—	4.4	0.003	0.72	0.0	0.04	14.00	0.00	2.257	10.03	0.19	3.6	96.4	0.0	0.89	0.55	0.55	0.69	—	4778	598	1	0	1	0	0	logfile
✔	7DFH	30664	2023-09-30	2020-11-08	2.97	3.14	—	3.1	0.008	0.93	0.0	0.06	13.96	0.01	2.159	5.69	0.09	3.4	96.6	0.0	-3.16	0.70	0.82	2.92	3.1	0.002	0.56	0.0	0.04	15.80	0.00	2.123	8.30	2.08	2.4	97.6	0.0	0.27	1.18	0.70	0.84	2.59	9980	1191	9	20	8	2	0	logfile
✔	7WLL	32587	2023-09-29	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	15.09	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.82	0.0	0.06	16.22	0.00	2.190	11.34	0.30	5.2	94.8	0.0	0.66	1.18	0.59	0.80	1.18	9540	1135	1	0	21	0	0	logfile
✔	6E1N	8958	2023-09-30	2018-07-10	3.7	3.85	3.77	3.8	0.015	1.55	0.0	0.07	14.72	0.01	2.054	10.59	0.37	8.3	91.6	0.2	-5.21	0.49	0.72	1.63	3.8	0.003	0.80	0.0	0.04	16.01	0.00	2.211	13.08	0.74	5.8	94.2	0.0	-0.96	0.89	0.52	0.72	0.61	10682	1278	6	0	24	2	0	logfile
✔	7RXA	24726	2023-09-29	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	15.07	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.004	0.59	0.0	0.04	13.97	0.00	2.236	3.35	0.00	5.0	95.0	0.0	0.66	0.32	0.67	0.85	2.86	8694	1156	4	0	8	0	0	logfile
✔	6VZ1	21481	2023-09-28	2020-02-27	3.2	3.35	—	3.4	0.014	1.25	0.0	0.06	19.42	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.003	0.60	0.0	0.04	17.88	0.00	2.184	8.23	0.42	5.5	94.5	0.0	-0.43	1.28	0.54	0.84	2.65	7112	822	4	0	6	0	0	logfile
✔	7CQi	30441	2023-09-29	2020-08-11	3.2	3.33	—	3.3	0.012	1.51	5.0	0.09	16.83	0.01	0.997	19.68	13.06	10.7	88.6	0.7	-5.50	0.71	0.85	3.34	3.3	0.002	0.67	0.0	0.04	16.25	0.00	2.078	6.94	0.42	5.9	94.0	0.1	-1.69	2.28	0.71	0.86	2.51	8881	1117	6	0	2	0	0	logfile
✔	7CQK	30442	2023-09-29	2020-08-11	3.3	3.38	—	3.3	0.011	1.34	3.0	0.08	19.23	0.01	0.963	29.97	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.002	0.67	0.0	0.04	16.86	0.00	2.227	5.71	0.11	4.8	95.1	0.1	-1.06	2.02	0.71	0.86	2.18	8859	1116	7	0	2	0	0	logfile

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