Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PEY	13361	2023-02-21	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.92	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.005	0.68	0.0	0.04	29.92	0.00	2.127	22.29	0.00	3.1	96.9	0.0	1.41	1.31	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	6N3C	0334	2023-02-17	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.005	0.71	0.0	0.04	15.41	0.00	2.401	13.69	1.32	11.3	88.7	0.0	-3.70	2.40	0.52	0.83	3.98	4260	640	20	0	0	0	0	logfile
✔	7CN8	30418	2023-02-26	2020-07-30	2.5	2.79	—	2.7	0.013	1.56	22.0	0.11	13.84	0.02	2.059	5.25	4.88	3.5	96.1	0.4	1.41	0.85	0.82	3.12	2.7	0.003	0.63	0.0	0.04	14.87	0.00	2.202	5.42	1.54	5.1	94.9	0.0	-0.40	1.20	0.87	0.87	3.37	27675	3375	39	0	96	0	0	logfile
✔	7VLY	32031	2023-02-20	2021-10-05	2.45	2.52	—	2.5	0.002	0.60	0.0	0.04	16.11	0.01	2.232	6.18	2.49	4.0	96.0	0.0	1.19	0.72	0.85	2.83	2.5	0.003	0.60	0.0	0.04	16.62	0.01	2.204	6.62	1.90	5.2	94.8	0.0	1.91	0.91	0.73	0.88	2.86	13347	1773	18	0	3	30	0	logfile
✔	6N37	9339	2023-02-16	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.44	0.00	2.275	19.32	1.20	11.8	88.2	0.0	-5.15	0.91	0.52	0.78	2.20	2580	360	10	0	0	0	0	logfile
✔	7F7F	31487	2023-02-20	2021-06-29	3.81	3.37	—	3.8	0.008	1.11	0.0	0.06	11.99	0.01	2.121	6.49	0.31	9.6	90.3	0.1	-5.60	0.64	0.70	2.89	3.7	0.004	0.73	0.0	0.04	14.43	0.00	2.006	14.48	0.62	8.2	91.8	0.0	-3.15	1.20	0.63	0.68	1.98	12076	1497	6	0	8	0	0	logfile
✔	4V1A	2787	2023-02-28	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.70	0.0	0.04	16.87	0.00	2.083	10.93	0.29	4.4	95.5	0.1	0.59	1.92	0.38	0.79	1.76	31917	3843	24	0	94	0	0	logfile
✔	6D7S	7824	2023-02-23	2018-04-25	4.34	4.44	—	4.3	0.007	1.16	0.0	0.06	11.86	0.01	2.248	6.93	1.17	12.1	87.8	0.2	-5.61	0.77	0.79	—	4.3	0.003	0.84	0.0	0.04	13.76	0.00	2.227	14.92	0.15	10.2	89.8	0.0	-1.25	1.42	0.77	0.80	—	19018	2372	4	0	0	0	0	logfile
✔	7JZV	22581	2023-02-21	2020-09-02	3.9	3.86	3.95	3.8	0.013	1.32	0.0	0.07	24.07	0.00	2.117	1.25	0.22	1.5	98.3	0.2	0.60	0.55	0.59	1.37	3.8	0.006	0.76	0.0	0.04	25.57	0.01	2.050	16.35	0.32	3.4	96.5	0.1	1.29	0.80	0.60	0.78	1.33	14339	1093	14	278	4	0	0	logfile
✔	7WoA	32646	2023-02-28	2022-01-21	3.25	2.98	—	3.2	0.002	0.42	0.0	0.04	8.91	0.00	2.229	6.55	4.23	3.8	96.2	0.0	-3.46	0.86	0.78	2.52	3.2	0.004	0.66	0.0	0.05	13.68	0.00	2.139	10.17	0.40	7.5	92.5	0.0	-1.83	0.85	0.89	0.85	2.85	31952	4060	10	0	39	0	0	logfile
✔	7V1Z	31631	2023-02-20	2021-08-07	2.98	3.07	—	3.1	0.003	0.58	0.0	0.05	13.83	0.00	2.207	3.78	0.22	2.9	97.1	0.0	1.19	0.66	0.82	2.96	3.0	0.002	0.54	0.0	0.04	16.33	0.00	2.193	4.70	1.71	2.8	97.2	0.0	1.43	0.60	0.69	0.86	2.23	12588	1592	4	0	0	0	0	logfile
✔	7R5M	14331	2023-02-20	2022-02-11	3.3	3.09	3.20	3.2	0.006	0.94	0.0	0.06	14.64	0.00	2.411	1.26	0.80	4.6	95.4	0.0	-0.79	0.70	0.80	2.46	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.111	3.04	0.08	1.6	98.4	0.0	1.73	1.36	0.70	0.86	2.07	11295	1491	9	0	0	0	0	logfile
✔	7M64	23688	2023-02-16	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.87	0.0	0.04	11.23	0.00	2.241	5.93	0.00	5.2	94.8	0.0	-3.94	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7R6L	24281	2023-02-18	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7EKM	31170	2023-02-19	2021-04-05	3.6	3.84	—	3.9	0.005	1.19	0.0	0.05	13.13	0.01	2.215	6.00	4.77	6.4	92.9	0.7	-4.90	0.65	0.75	2.32	3.8	0.002	0.69	0.0	0.04	15.08	0.00	2.152	5.72	0.41	4.5	95.4	0.1	-2.14	1.48	0.65	0.82	1.44	9124	1162	2	0	0	0	0	logfile
✔	8ADU	15370	2023-02-17	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.3	0.006	0.77	0.0	0.05	17.58	0.00	2.306	16.01	2.61	12.8	87.2	0.0	-4.37	2.39	0.48	0.82	3.07	3460	495	5	0	0	0	0	logfile
✔	6WZG	21972	2023-02-18	2020-05-13	2.3	2.06	2.21	2.3	0.012	1.56	18.0	0.12	14.02	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.62	0.0	0.04	16.41	0.00	2.112	6.07	1.54	1.9	98.1	0.0	1.42	0.99	0.73	0.87	5.09	8939	1165	6	0	0	0	0	logfile
✔	7MR0	23952	2023-02-23	2021-05-07	3.7	4.10	—	4.0	0.003	0.81	0.0	0.05	15.13	0.01	2.284	4.14	0.44	5.8	94.2	0.0	-1.82	0.84	0.82	1.66	4.0	0.005	0.66	0.0	0.04	16.44	0.00	2.174	9.19	0.29	7.5	92.5	0.0	-0.46	0.36	0.85	0.84	1.84	19282	2400	3	0	0	0	0	logfile
✔	6SD5	10149	2023-02-21	2019-07-26	3.1	3.26	3.11	3.2	0.006	0.71	0.0	0.04	15.04	0.00	2.321	8.86	1.39	8.3	91.7	0.0	-5.48	0.67	0.85	3.48	3.3	0.003	0.62	0.0	0.04	16.82	0.00	2.259	12.61	0.95	2.3	97.7	0.0	-1.19	0.62	0.68	0.87	3.20	14212	1936	22	0	0	0	0	logfile
✔	6PPR	20446	2023-02-20	2019-07-08	3.5	3.62	—	3.6	0.009	1.16	0.0	0.06	14.83	0.01	2.032	11.04	1.28	10.1	89.8	0.1	-6.00	0.77	0.84	3.29	3.6	0.004	0.71	0.0	0.04	17.04	0.00	2.032	5.71	0.39	5.7	94.3	0.0	-1.81	1.08	0.78	0.85	2.39	11995	1594	4	32	2	0	0	logfile

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