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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VCD | 21149 | 2024-03-11 | 2019-12-20 | 3.0 | 3.21 | — | 3.2 | 0.005 | 0.70 | 0.0 | 0.04 | 14.13 | 0.00 | 2.170 | 9.40 | 0.11 | 10.1 | 89.7 | 0.2 | -4.83 | 0.73 | 0.82 | 3.84 | 3.2 | 0.002 | 0.61 | 0.0 | 0.04 | 16.36 | 0.00 | 2.177 | 10.09 | 2.68 | 7.8 | 92.1 | 0.1 | -1.57 | 0.43 | 0.72 | 0.83 | 2.56 | 8082 | 1033 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JB1 | 9787 | 2024-03-25 | 2019-01-25 | 3.3 | 3.82 | — | 3.7 | 0.008 | 1.06 | 0.0 | 0.58 | 23.68 | 0.00 | 2.257 | 10.49 | 6.21 | 4.9 | 95.1 | 0.0 | -2.18 | 0.61 | 0.66 | 1.59 | 3.7 | 0.003 | 0.89 | 0.0 | 0.08 | 19.30 | 0.00 | 2.182 | 11.15 | 3.46 | 2.9 | 97.1 | 0.0 | 1.20 | 0.67 | 0.67 | 0.75 | 1.25 | 52028 | 6772 | 16 | 0 | 68 | 0 | 0 | logfile |
✔ | 7JVC | 22506 | 2024-03-21 | 2020-08-20 | 3.3 | 3.50 | 3.41 | 3.4 | 0.013 | 1.42 | 0.0 | 0.09 | 10.64 | 0.01 | 2.428 | 0.97 | 0.13 | 2.3 | 97.6 | 0.1 | 0.71 | 0.78 | 0.78 | 3.47 | 3.4 | 0.005 | 0.64 | 0.0 | 0.05 | 12.49 | 0.00 | 2.148 | 5.12 | 2.58 | 3.0 | 97.0 | 0.0 | 0.89 | 1.21 | 0.81 | 0.84 | 3.06 | 29562 | 4272 | 27 | 0 | 66 | 0 | 0 | logfile |
✔ | 7Q0B | 13743 | 2024-03-18 | 2021-10-14 | 3.0 | 3.18 | 3.08 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 15.11 | 0.00 | 2.254 | 4.77 | 0.13 | 3.6 | 96.4 | 0.0 | 0.64 | 0.81 | 0.85 | 3.42 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 17.30 | 0.00 | 2.267 | 5.30 | 1.60 | 3.7 | 96.3 | 0.0 | 0.88 | 0.32 | 0.82 | 0.87 | 2.93 | 21168 | 2618 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iGG | 35432 | 2024-03-16 | 2023-02-20 | 4.09 | 4.18 | 4.06 | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 15.14 | 0.00 | 2.146 | 9.75 | 0.00 | 7.4 | 92.6 | 0.0 | -0.07 | 0.74 | 0.82 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.50 | 0.00 | 2.181 | 10.70 | 0.00 | 7.7 | 92.2 | 0.1 | 0.01 | 0.33 | 0.75 | 0.82 | — | 15998 | 2054 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UDQ | 20743 | 2024-03-21 | 2019-09-19 | 3.27 | 3.39 | 3.21 | 3.5 | 0.014 | 1.19 | 1.0 | 0.06 | 15.05 | 0.01 | 2.239 | 4.98 | 1.09 | 6.0 | 94.0 | 0.0 | -3.91 | 0.64 | 0.86 | 3.74 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.02 | 0.00 | 2.134 | 10.44 | 3.29 | 4.1 | 95.9 | 0.0 | -0.55 | 1.53 | 0.60 | 0.86 | 2.47 | 31008 | 3956 | 20 | 0 | 32 | 0 | 0 | logfile |
✔ | 6WBF | 21588 | 2024-03-18 | 2020-03-26 | 2.83 | 2.57 | — | 3.0 | 0.007 | 0.83 | 0.0 | 0.04 | 16.59 | 0.01 | 2.183 | 11.63 | 0.38 | 5.0 | 95.0 | 0.0 | -1.45 | 0.44 | 0.62 | 2.99 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 16.15 | 0.00 | 2.201 | 11.41 | 2.88 | 3.8 | 96.2 | 0.0 | 1.44 | 0.66 | 0.62 | 0.79 | 3.23 | 19712 | 2408 | 14 | 0 | 49 | 0 | 0 | logfile |
✔ | 7X24 | 32957 | 2024-03-15 | 2022-02-25 | 3.4 | 2.84 | 3.24 | 3.2 | 0.006 | 1.21 | 0.0 | 0.05 | 15.94 | 0.01 | 2.080 | 8.34 | 0.00 | 4.0 | 96.0 | 0.0 | 0.37 | 0.65 | 0.82 | 2.68 | 3.2 | 0.005 | 0.67 | 0.0 | 0.05 | 17.16 | 0.00 | 1.939 | 9.16 | 2.20 | 5.2 | 94.8 | 0.0 | 0.06 | 0.89 | 0.66 | 0.84 | 2.56 | 10286 | 1263 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 7KFH | 22853 | 2024-03-16 | 2020-10-13 | 3.8 | 3.87 | — | 3.8 | 0.021 | 1.76 | 0.0 | 0.11 | 12.00 | 0.01 | 2.360 | 0.45 | 0.21 | 1.8 | 97.8 | 0.4 | 1.11 | 0.69 | 0.85 | 3.27 | 3.8 | 0.005 | 0.73 | 0.0 | 0.04 | 13.74 | 0.00 | 2.126 | 7.91 | 3.25 | 4.3 | 95.6 | 0.2 | 0.20 | 1.36 | 0.70 | 0.86 | 2.50 | 13575 | 1695 | 21 | 0 | 30 | 0 | 0 | logfile |
✔ | 6TTU | 10585 | 2024-03-15 | 2019-12-30 | 3.7 | 3.87 | 3.69 | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 15.10 | 0.00 | 1.312 | 13.58 | 0.29 | 9.3 | 90.7 | 0.0 | -2.77 | 0.82 | 0.80 | 1.42 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 17.15 | 0.00 | 2.177 | 11.01 | 2.84 | 6.3 | 93.7 | 0.0 | -0.10 | 1.62 | 0.82 | 0.81 | 1.42 | 12746 | 1604 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7K4N | 22668 | 2024-03-19 | 2020-09-15 | 3.3 | 3.50 | 3.37 | 3.4 | 0.013 | 1.41 | 0.0 | 0.09 | 9.34 | 0.01 | 2.431 | 0.43 | 0.00 | 2.7 | 97.3 | 0.0 | 0.95 | 0.80 | 0.80 | 4.31 | 3.4 | 0.007 | 0.67 | 0.0 | 0.05 | 12.29 | 0.00 | 2.170 | 6.05 | 1.92 | 3.1 | 96.9 | 0.0 | 0.73 | 0.56 | 0.84 | 0.86 | 3.92 | 25353 | 3654 | 27 | 0 | 63 | 0 | 0 | logfile |
✔ | 7KGE | 22867 | 2024-03-19 | 2020-10-16 | 3.21 | 3.10 | — | 3.1 | 0.004 | 0.77 | 2.0 | 0.05 | 14.75 | 0.01 | 2.101 | 6.73 | 0.90 | 1.4 | 98.6 | 0.0 | 1.64 | 0.66 | 0.79 | 2.17 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 16.31 | 0.00 | 2.188 | 8.02 | 2.42 | 1.6 | 98.4 | 0.0 | 1.35 | 0.38 | 0.68 | 0.83 | 2.27 | 23478 | 3060 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 8AYH | 15713 | 2024-03-17 | 2022-09-02 | 3.35 | 3.45 | 3.40 | 3.4 | 0.007 | 0.91 | 0.0 | 0.06 | 14.46 | 0.01 | 2.114 | 5.00 | 0.65 | 6.5 | 93.4 | 0.1 | -4.12 | 0.83 | 0.85 | 2.90 | 3.4 | 0.004 | 0.60 | 0.0 | 0.05 | 16.02 | 0.00 | 2.029 | 9.06 | 3.64 | 6.1 | 93.9 | 0.0 | -1.31 | 0.52 | 0.84 | 0.87 | 2.74 | 19109 | 2414 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 7F6D | 31478 | 2024-03-21 | 2021-06-25 | 3.85 | 4.03 | — | 3.9 | 0.002 | 0.59 | 0.0 | 0.04 | 13.43 | 0.00 | 2.214 | 9.10 | 0.03 | 6.7 | 93.3 | 0.0 | -0.98 | 0.79 | 0.77 | 1.28 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 15.34 | 0.00 | 2.144 | 12.06 | 2.58 | 8.4 | 91.6 | 0.1 | -1.10 | 0.37 | 0.80 | 0.79 | 1.12 | 28930 | 3790 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B5S | 12050 | 2024-03-11 | 2020-12-07 | 3.6 | 3.59 | 3.45 | 3.6 | 0.006 | 0.78 | 0.0 | 0.04 | 15.48 | 0.01 | 1.997 | 11.05 | 0.24 | 8.7 | 91.3 | 0.0 | -0.49 | 0.73 | 0.83 | 2.15 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 17.43 | 0.00 | 2.184 | 10.26 | 2.52 | 7.3 | 92.7 | 0.0 | 0.89 | 0.38 | 0.72 | 0.81 | 1.34 | 7671 | 931 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7DGZ | 30676 | 2024-03-12 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.43 | 3.0 | 0.07 | 12.68 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 14.85 | 0.01 | 2.088 | 12.84 | 3.00 | 15.7 | 83.9 | 0.3 | -3.57 | 1.59 | 0.82 | 0.74 | 0.63 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 7A46 | 11629 | 2024-03-15 | 2020-08-19 | 3.0 | 3.95 | 2.87 | 3.7 | 0.007 | 0.61 | 0.0 | 0.04 | 12.01 | 0.00 | 2.225 | 4.56 | 5.95 | 2.4 | 97.6 | 0.0 | -1.57 | 0.58 | 0.79 | 3.53 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 15.82 | 0.00 | 2.256 | 8.77 | 3.15 | 2.7 | 97.3 | 0.0 | 2.40 | 1.24 | 0.57 | 0.78 | 3.23 | 11501 | 1449 | 7 | 0 | 112 | 0 | 0 | logfile |
✔ | 7MR3 | 23955 | 2024-03-19 | 2021-05-07 | 3.6 | 4.01 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.05 | 16.47 | 0.01 | 2.250 | 5.33 | 0.00 | 6.5 | 93.5 | 0.0 | -1.62 | 0.83 | 0.82 | 1.78 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 17.95 | 0.00 | 2.202 | 9.58 | 1.77 | 5.8 | 94.2 | 0.0 | 0.11 | 0.29 | 0.83 | 0.83 | 1.32 | 23615 | 2854 | 5 | 40 | 0 | 0 | 0 | logfile |
✔ | 7MiK | 23854 | 2024-03-19 | 2021-04-17 | 3.12 | 3.08 | — | 3.2 | 0.010 | 1.47 | 0.0 | 0.05 | 20.36 | 0.01 | 2.170 | 4.32 | 0.53 | 4.1 | 95.9 | 0.0 | -6.20 | 0.68 | 0.82 | 4.22 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 17.31 | 0.00 | 2.191 | 5.81 | 0.74 | 3.1 | 96.9 | 0.0 | 0.03 | 1.04 | 0.73 | 0.87 | 3.02 | 22728 | 2560 | 8 | 0 | 40 | 0 | 0 | logfile |
✔ | 7N4X | 24180 | 2024-03-11 | 2021-06-04 | 3.33 | 3.49 | — | 3.5 | 0.014 | 1.76 | 0.0 | 0.21 | 15.86 | 0.01 | 2.134 | 5.53 | 1.23 | 7.5 | 92.5 | 0.0 | -3.15 | 0.52 | 0.76 | 2.75 | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 15.07 | 0.00 | 2.180 | 5.46 | 2.22 | 3.3 | 96.7 | 0.0 | 0.44 | 0.92 | 0.71 | 0.87 | 2.32 | 7647 | 953 | 5 | 0 | 13 | 0 | 0 | logfile |