Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NT9	0506	2023-04-21	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.003	0.50	0.0	0.04	14.15	0.00	2.226	4.50	0.18	1.8	98.2	0.0	2.60	0.58	0.83	0.88	3.12	9906	1228	4	0	0	0	0	logfile
✔	3J9S	6272	2023-04-21	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	6Y9X	10740	2023-04-24	2020-03-10	4.4	4.70	4.26	4.4	0.012	1.07	3.0	0.11	13.05	0.01	1.344	12.07	0.45	2.0	98.0	0.0	-0.96	0.69	0.74	—	4.4	0.004	0.83	0.0	0.05	13.72	0.01	2.099	20.44	0.05	3.1	96.9	0.0	-0.34	1.79	0.73	0.78	—	18418	2364	13	0	0	0	0	logfile
✔	8B8T	15921	2023-04-20	2022-10-05	4.2	3.64	4.09	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.0	0.008	0.97	0.0	0.05	13.59	0.01	2.070	11.18	0.00	5.9	94.1	0.0	-0.32	0.52	0.74	0.78	—	7180	989	4	0	0	0	0	logfile
✔	6N7V	0364	2023-04-22	2018-11-28	3.8	4.02	—	3.8	0.005	0.89	0.0	0.05	14.42	0.00	2.119	3.58	0.15	3.8	96.2	0.0	-3.41	0.76	0.74	1.21	3.8	0.003	0.68	0.0	0.04	16.51	0.00	1.834	12.45	0.30	4.2	95.8	0.0	-0.67	0.95	0.78	0.77	1.06	12861	1606	12	16	10	0	0	logfile
✔	7ZDH	14648	2023-04-24	2022-03-29	3.46	3.63	—	3.4	0.005	0.77	0.0	1.03	15.81	0.01	2.238	4.73	0.28	3.1	96.9	0.0	-0.39	0.92	0.89	2.07	3.4	0.008	1.56	0.0	0.31	16.07	0.00	2.099	8.02	0.28	3.1	96.9	0.0	0.92	0.28	0.91	0.88	2.16	67219	8227	66	0	35	0	0	logfile
✔	6LVF	0992	2023-04-22	2020-02-02	3.7	3.81	—	3.7	0.010	1.23	0.0	0.06	12.77	0.01	2.216	6.98	0.16	8.3	91.7	0.0	-4.32	0.68	0.78	1.66	3.7	0.003	0.67	0.0	0.04	14.81	0.00	2.213	11.95	0.24	5.9	94.1	0.0	0.11	1.21	0.67	0.77	0.89	12380	1586	4	0	6	0	0	logfile
✔	6VVo	21405	2023-04-27	2020-02-18	3.4	3.45	—	3.3	0.008	0.82	0.0	0.05	14.00	0.00	1.915	9.84	0.41	4.7	95.2	0.1	-2.93	0.89	0.86	2.75	3.3	0.002	0.56	0.0	0.04	15.23	0.00	2.003	7.61	0.18	3.3	96.7	0.0	0.57	1.15	0.90	0.88	2.45	19668	2493	13	0	9	0	0	logfile
✔	6XTB	10618	2023-04-19	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6S8J	10124	2023-04-22	2019-07-10	2.91	3.06	3.00	3.0	0.006	1.00	0.0	0.06	13.26	0.01	2.185	7.67	3.27	3.3	96.5	0.2	-0.67	0.74	0.84	4.26	3.0	0.005	0.76	0.0	0.05	15.81	0.01	2.178	5.75	3.35	3.6	96.4	0.0	-0.66	1.00	0.76	0.88	3.89	12391	1584	27	0	6	163	0	logfile
✔	7XJP	33233	2023-04-24	2022-04-18	2.71	3.46	2.74	3.2	0.005	0.80	0.0	0.05	13.01	0.00	2.215	12.28	0.82	3.6	96.3	0.1	-1.81	0.78	0.70	2.56	3.3	0.004	0.66	0.0	0.04	15.83	0.00	2.190	11.04	1.43	2.9	97.1	0.0	0.66	0.67	0.84	0.82	2.09	8930	1089	4	0	3	0	0	logfile
✔	6XKV	22226	2023-04-22	2020-06-27	3.5	3.61	—	3.6	0.009	1.02	1.0	0.07	13.76	0.01	1.987	23.35	0.08	16.4	83.2	0.4	-4.31	0.74	0.81	2.35	3.6	0.004	0.76	0.0	0.04	15.67	0.00	2.112	9.17	0.56	11.3	88.6	0.1	-0.53	2.05	0.73	0.84	2.13	13079	1678	12	0	8	0	0	logfile
✔	7N5D	24186	2023-04-25	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✔	7K8A	22724	2023-04-21	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	6V86	21096	2023-04-24	2019-12-10	4.63	4.30	—	4.1	0.004	0.83	0.0	0.04	14.79	0.01	1.470	23.47	0.70	13.1	86.6	0.2	-4.51	0.80	0.73	—	4.1	0.003	0.79	0.0	0.04	14.55	0.00	2.025	17.65	0.35	11.9	88.1	0.0	-1.22	0.69	0.81	0.73	—	17781	2229	7	0	2	0	0	logfile
✔	6X13	21987	2023-04-19	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.003	0.66	0.0	0.04	16.00	0.00	2.254	8.98	0.00	5.3	94.7	0.0	1.35	0.42	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	7oGM	12884	2023-04-24	2021-05-06	3.7	3.96	3.87	3.8	0.015	1.84	9.0	0.11	16.90	0.01	2.245	5.94	3.12	3.6	96.3	0.0	-1.16	0.85	0.83	2.45	3.8	0.003	0.68	0.0	0.04	16.22	0.00	2.161	7.18	0.40	2.9	97.1	0.0	0.75	1.27	0.83	0.80	2.12	17683	2454	10	49	0	0	0	logfile
✔	7D3S	30566	2023-04-20	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	10.24	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	2.8	0.003	0.54	0.0	0.04	16.90	0.00	2.096	9.21	0.78	3.1	96.9	0.0	0.98	0.48	0.60	0.79	2.75	8338	1048	6	0	0	0	0	logfile
✔	7CTT	30469	2023-04-21	2020-08-20	3.2	3.41	—	3.3	0.007	0.51	0.0	0.04	12.97	0.00	2.114	10.28	1.01	4.9	95.1	0.0	-3.11	0.71	0.77	2.67	3.4	0.003	0.62	0.0	0.04	14.95	0.00	2.061	14.29	0.23	4.9	95.1	0.0	-0.79	0.39	0.70	0.77	2.48	8912	1031	7	34	4	0	0	logfile
✔	7ZQP	14873	2023-04-24	2022-05-02	3.6	2.97	3.42	3.0	0.003	0.48	0.0	0.04	13.61	0.00	2.048	5.00	0.00	3.8	96.2	0.0	-0.86	0.64	0.80	2.81	3.0	0.005	0.59	0.0	0.05	15.62	0.00	2.125	9.22	0.30	4.7	95.3	0.0	-0.85	0.43	0.65	0.80	2.59	18315	2289	6	0	0	0	0	logfile

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