Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G0Z	29658	2023-11-18	2023-02-01	3.61	3.76	3.60	3.8	0.005	0.74	0.0	0.05	11.86	0.00	1.829	12.10	2.19	5.7	94.3	0.0	0.25	0.52	0.59	1.01	3.8	0.004	0.66	0.0	0.04	16.02	0.00	1.903	12.39	0.36	5.6	94.4	0.0	-0.13	0.94	0.64	0.71	1.23	20944	2592	12	12	10	0	0	logfile
✔	7E2D	30955	2023-11-18	2021-02-05	3.71	3.99	—	3.8	0.007	1.44	3.0	0.08	14.42	0.01	1.563	7.01	0.69	10.0	89.1	0.9	-4.65	0.81	0.70	1.33	3.7	0.005	0.83	0.0	0.05	16.03	0.00	2.138	17.49	0.54	13.2	86.5	0.2	-2.36	0.75	0.82	0.75	1.29	23331	3291	11	0	0	0	0	logfile
✔	8D66	27218	2023-11-15	2022-06-06	3.14	3.25	3.04	3.2	0.009	1.02	0.0	0.06	16.96	0.01	2.309	7.77	0.00	6.2	93.8	0.0	-1.63	0.69	0.83	3.44	3.2	0.004	0.57	0.0	0.05	15.52	0.00	2.214	7.58	0.36	5.2	94.8	0.0	0.02	0.37	0.66	0.83	3.50	12800	1540	10	0	5	0	0	logfile
✔	5T62	8362	2023-11-18	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.88	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.005	0.70	0.0	0.04	16.38	0.01	1.047	5.65	0.62	7.2	92.1	0.6	-1.52	0.70	0.80	0.87	2.54	131766	7061	57	3483	438	6	0	logfile
✔	7XJL	33231	2023-11-14	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.003	0.71	0.0	0.04	15.86	0.00	2.122	16.26	0.58	3.0	97.0	0.0	0.94	0.47	0.62	0.77	1.62	8527	1137	6	0	0	0	0	logfile
✔	5G06	3366	2023-11-19	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	6X67	22072	2023-11-15	2020-05-27	3.47	3.79	—	3.7	0.015	1.84	8.0	0.10	21.15	0.01	2.028	8.90	0.23	4.6	94.5	0.8	-0.81	0.74	0.82	2.49	3.7	0.004	0.74	0.0	0.04	22.65	0.00	2.204	10.31	0.68	6.0	93.9	0.1	0.03	0.81	0.69	0.83	1.75	10984	956	10	160	8	0	0	logfile
✔	7o17	12692	2023-11-15	2021-03-28	4.5	4.66	—	4.2	0.007	1.22	0.0	0.07	16.51	0.01	2.089	10.97	1.09	9.8	90.2	0.0	-5.33	0.78	0.83	—	4.2	0.003	0.76	0.0	0.04	14.39	0.00	1.928	23.91	0.00	8.0	92.0	0.0	-1.97	0.57	0.78	0.83	—	11679	1531	7	0	4	0	0	logfile
✔	7SL9	25195	2023-11-13	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.004	0.80	0.0	0.04	15.68	0.00	2.101	14.88	1.01	6.1	93.9	0.0	-1.25	1.23	0.64	0.82	1.41	4712	619	3	0	1	0	0	logfile
✔	5X5C	6706	2023-11-19	2017-02-15	4.1	4.20	—	4.1	0.014	1.75	3.0	0.08	14.64	0.01	1.435	30.55	5.82	13.2	85.6	1.2	-3.80	0.65	0.57	—	4.1	0.004	0.96	0.0	0.05	13.03	0.01	2.034	19.12	0.07	12.9	86.9	0.2	-2.46	1.55	0.72	0.71	—	26418	3423	3	0	0	0	0	logfile
✔	6DBR	7848	2023-11-16	2018-05-03	4.0	4.12	—	4.0	0.005	1.05	3.0	0.05	21.17	0.01	1.376	19.29	0.25	7.9	92.0	0.1	-4.14	0.80	0.82	—	4.0	0.003	0.73	0.0	0.04	21.54	0.00	2.144	16.41	0.32	5.6	94.3	0.1	-1.31	1.50	0.80	0.82	—	17040	1794	10	136	6	0	0	logfile
✔	7N28	24128	2023-11-20	2021-05-28	4.2	4.38	4.07	4.2	0.005	0.74	1.0	0.06	14.29	0.00	2.103	12.05	0.16	7.9	92.1	0.0	-1.88	0.85	0.79	—	4.2	0.003	0.63	0.0	0.05	14.22	0.00	2.051	11.69	0.06	6.8	93.2	0.0	-1.52	0.37	0.85	0.79	—	29461	3523	58	0	140	0	0	logfile
✔	7ARB	11878	2023-11-15	2020-10-23	3.41	3.20	—	3.2	0.004	0.65	2.0	0.07	13.95	0.00	1.982	8.37	0.02	3.8	96.1	0.1	0.49	0.78	0.85	3.13	3.2	0.002	0.52	0.0	0.04	15.88	0.00	2.029	7.92	0.09	3.3	96.7	0.0	0.94	1.91	0.81	0.88	2.71	61765	7716	66	0	55	0	0	logfile
✔	6AB5	6999	2023-11-21	2018-07-20	3.7	3.79	—	3.7	0.007	0.96	6.0	0.06	11.27	0.01	1.686	24.89	0.75	5.6	94.4	0.0	-3.80	0.85	0.86	3.48	3.7	0.007	0.66	0.0	0.05	14.07	0.00	2.100	12.10	0.29	7.2	92.8	0.0	-2.04	0.62	0.87	0.87	2.34	139740	18180	60	0	0	0	0	logfile
✔	7Q9F	13868	2023-11-21	2021-11-12	3.6	3.95	—	3.7	0.004	0.51	0.0	0.04	9.26	0.00	1.941	4.46	0.45	3.9	96.1	0.0	0.15	0.88	0.86	2.34	3.7	0.003	0.58	0.0	0.04	12.62	0.00	2.113	10.88	0.11	4.6	95.4	0.0	0.10	1.03	0.88	0.86	1.98	34264	4312	29	0	64	0	0	logfile
✔	7Y24	33585	2023-11-14	2022-06-09	3.25	3.61	3.34	3.6	0.004	0.68	2.0	0.06	12.92	0.00	2.208	12.97	0.37	3.0	97.0	0.0	0.69	0.61	0.73	1.83	3.5	0.003	0.63	0.0	0.04	15.21	0.00	2.227	12.72	0.25	3.1	96.9	0.0	0.78	1.19	0.62	0.76	1.47	8229	1127	6	0	2	0	0	logfile
✔	7SNi	25227	2023-11-16	2021-10-28	2.5	2.71	—	2.8	0.006	0.74	0.0	0.05	17.05	0.00	2.239	8.51	0.06	2.1	97.9	0.0	-0.02	0.71	0.80	3.21	2.8	0.005	0.62	0.0	0.05	18.35	0.00	2.007	12.96	1.40	2.6	97.4	0.0	-0.29	0.36	0.68	0.81	3.49	16533	1952	12	0	12	233	0	logfile
✔	7WF4	32460	2023-11-18	2021-12-25	3.4	2.86	—	2.8	0.009	1.05	8.0	0.07	13.55	0.01	2.085	6.38	6.01	3.8	95.7	0.4	-1.41	0.61	0.73	3.58	2.8	0.005	0.63	0.0	0.04	14.81	0.00	2.090	4.97	0.47	3.2	96.4	0.4	0.69	1.41	0.71	0.85	3.65	22143	2760	25	0	7	100	0	logfile
✔	8Q9i	18282	2023-11-13	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	17.83	0.00	2.169	1.76	0.00	0.5	99.5	0.0	-1.49	4.60	0.38	0.87	7.68	3411	219	3	0	0	0	1740	logfile
✔	6KFG	9972	2023-11-18	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.005	0.78	0.0	0.04	16.41	0.00	2.166	13.65	1.09	8.9	91.1	0.0	-0.56	1.36	0.63	0.82	1.37	22264	2704	8	0	0	0	0	logfile

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