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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7o85 | 12761 | 2024-04-13 | 2021-04-14 | 3.3 | 3.50 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.51 | 0.00 | 1.470 | 7.44 | 0.00 | 3.3 | 96.7 | 0.0 | -0.25 | 0.71 | 0.75 | 2.90 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 15.44 | 0.00 | 2.145 | 9.89 | 2.49 | 4.5 | 95.5 | 0.0 | -0.73 | 0.51 | 0.73 | 0.80 | 3.22 | 28525 | 3843 | 28 | 0 | 14 | 0 | 0 | logfile |
✔ | 6CDi | 7460 | 2024-04-14 | 2018-02-08 | 3.6 | 3.90 | — | 3.6 | 0.008 | 1.06 | 0.0 | 0.10 | 16.87 | 0.01 | 1.461 | 7.85 | 0.45 | 5.9 | 94.0 | 0.1 | -3.25 | 0.84 | 0.84 | 2.59 | 3.6 | 0.003 | 0.84 | 0.0 | 0.05 | 13.54 | 0.00 | 2.086 | 10.78 | 2.77 | 6.7 | 93.3 | 0.0 | -0.89 | 1.76 | 0.85 | 0.86 | 2.47 | 32763 | 3843 | 81 | 0 | 210 | 0 | 0 | logfile |
✔ | 7KoE | 22973 | 2024-04-10 | 2020-11-08 | 2.9 | 3.08 | — | 3.0 | 0.013 | 1.42 | 0.0 | 0.09 | 16.97 | 0.02 | 1.984 | 10.90 | 2.18 | 6.7 | 93.2 | 0.1 | -4.90 | 0.76 | 0.83 | 3.56 | 3.0 | 0.005 | 0.68 | 0.0 | 0.05 | 16.94 | 0.00 | 2.117 | 13.07 | 3.17 | 5.4 | 94.6 | 0.0 | -1.78 | 1.54 | 0.71 | 0.83 | 3.36 | 18348 | 2296 | 16 | 0 | 12 | 0 | 0 | logfile |
✔ | 8GXY | 34365 | 2024-04-13 | 2022-09-21 | 2.8 | 2.43 | 2.80 | 2.7 | 0.005 | 0.52 | 0.0 | 0.04 | 14.57 | 0.00 | 1.951 | 5.20 | 0.03 | 2.1 | 97.9 | 0.0 | 0.94 | 0.63 | 0.82 | 4.11 | 2.7 | 0.004 | 0.60 | 0.0 | 0.04 | 17.68 | 0.00 | 2.022 | 6.68 | 2.89 | 1.8 | 98.2 | 0.0 | 1.24 | 0.68 | 0.72 | 0.87 | 3.50 | 29472 | 3788 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ME0 | 9105 | 2024-04-11 | 2018-09-05 | 3.6 | 3.74 | — | 3.6 | 0.010 | 1.16 | 0.0 | 0.05 | 25.12 | 0.01 | 1.531 | 13.75 | 0.00 | 11.8 | 88.2 | 0.0 | -5.11 | 0.89 | 0.81 | 2.89 | 3.6 | 0.004 | 0.65 | 0.0 | 0.03 | 24.79 | 0.00 | 1.861 | 18.31 | 3.10 | 11.8 | 88.2 | 0.0 | -2.07 | 0.93 | 0.89 | 0.81 | 1.93 | 21539 | 414 | 4 | 845 | 33 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2024-04-11 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.04 | 14.85 | 0.00 | 1.829 | 15.52 | 3.37 | 10.5 | 89.2 | 0.3 | -1.92 | 1.49 | 0.83 | 0.81 | 1.31 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2024-04-11 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.004 | 0.72 | 0.0 | 0.04 | 13.43 | 0.00 | 2.123 | 8.59 | 2.21 | 4.3 | 95.5 | 0.2 | -1.26 | 1.34 | 0.78 | 0.87 | 1.84 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QEQ | 13937 | 2024-04-10 | 2021-12-03 | 1.9 | 2.38 | 1.89 | 2.1 | 0.005 | 0.87 | 0.0 | 0.04 | 12.39 | 0.00 | 2.181 | 2.19 | 1.18 | 1.1 | 98.9 | 0.0 | 1.60 | 0.82 | 0.90 | 4.56 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.10 | 0.00 | 2.219 | 2.71 | 1.13 | 1.6 | 98.4 | 0.0 | 3.96 | 0.49 | 0.82 | 0.92 | 4.10 | 19313 | 2268 | 36 | 0 | 60 | 305 | 0 | logfile |
✔ | 8DBo | 27293 | 2024-04-09 | 2022-06-14 | 2.5 | 2.48 | 2.52 | 2.5 | 0.007 | 1.02 | 0.0 | 0.05 | 18.64 | 0.00 | 1.866 | 10.11 | 3.37 | 4.1 | 95.9 | 0.0 | 0.90 | 0.61 | 0.74 | 3.60 | 2.5 | 0.003 | 0.72 | 0.0 | 0.05 | 18.25 | 0.00 | 1.906 | 9.88 | 3.62 | 3.5 | 96.5 | 0.0 | -0.80 | 0.70 | 0.68 | 0.78 | 4.17 | 14880 | 1896 | 18 | 0 | 30 | 18 | 0 | logfile |
✔ | 6UUZ | 20903 | 2024-04-14 | 2019-11-01 | 3.0 | 3.14 | — | 3.1 | 0.029 | 1.52 | 0.0 | 0.06 | 13.56 | 0.01 | 1.608 | 10.92 | 1.45 | 5.6 | 94.2 | 0.2 | -4.07 | 0.62 | 0.65 | 3.25 | 3.1 | 0.004 | 0.66 | 0.0 | 0.05 | 15.37 | 0.00 | 2.204 | 13.23 | 1.57 | 4.4 | 95.6 | 0.0 | -0.87 | 0.99 | 0.70 | 0.74 | 2.75 | 31818 | 4084 | 10 | 0 | 4 | 2 | 0 | logfile |
✔ | 8DBN | 27291 | 2024-04-08 | 2022-06-14 | 2.4 | 2.39 | 2.44 | 2.5 | 0.012 | 1.14 | 0.0 | 0.05 | 18.88 | 0.04 | 2.177 | 9.85 | 3.24 | 4.3 | 95.7 | 0.0 | 0.86 | 0.49 | 0.58 | 1.69 | 2.5 | 0.003 | 1.39 | 0.0 | 0.05 | 18.05 | 0.00 | 1.843 | 11.65 | 2.53 | 3.7 | 96.3 | 0.0 | 0.19 | 0.85 | 0.58 | 0.67 | 2.35 | 14244 | 1824 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6VK1 | 21223 | 2024-04-06 | 2020-01-18 | 3.9 | 3.99 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 14.77 | 0.00 | 2.245 | 10.65 | 0.13 | 4.4 | 95.6 | 0.0 | -1.86 | 0.62 | 0.79 | 1.42 | 4.0 | 0.004 | 0.81 | 0.0 | 0.04 | 17.43 | 0.00 | 2.181 | 12.24 | 3.30 | 4.5 | 95.5 | 0.0 | 1.59 | 1.54 | 0.62 | 0.79 | 1.03 | 7259 | 882 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6USF | 20863 | 2024-04-12 | 2019-10-26 | 3.87 | 4.09 | — | 3.9 | 0.014 | 1.55 | 1.0 | 0.11 | 16.34 | 0.01 | 2.004 | 10.47 | 0.08 | 7.0 | 93.0 | 0.0 | -4.48 | 0.81 | 0.80 | 1.61 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 16.24 | 0.00 | 2.111 | 9.17 | 2.82 | 4.7 | 95.3 | 0.0 | -0.77 | 0.56 | 0.82 | 0.82 | 1.29 | 23022 | 2868 | 17 | 0 | 13 | 0 | 0 | logfile |
✔ | 7BNM | 12229 | 2024-04-12 | 2021-01-22 | 3.6 | 3.93 | 3.69 | 3.8 | 0.008 | 0.84 | 2.0 | 0.06 | 12.00 | 0.01 | 2.213 | 9.06 | 0.61 | 5.7 | 94.3 | 0.0 | -2.03 | 0.85 | 0.84 | 1.93 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 13.62 | 0.00 | 2.180 | 7.99 | 1.21 | 5.6 | 94.4 | 0.0 | -0.83 | 0.59 | 0.86 | 0.85 | 1.67 | 25971 | 3207 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7T4R | 25686 | 2024-04-13 | 2021-12-10 | 3.3 | 2.34 | — | 3.1 | 0.004 | 0.64 | 0.0 | 0.04 | 13.15 | 0.01 | 2.123 | 8.83 | 0.00 | 3.8 | 96.2 | 0.0 | -0.69 | 0.76 | 0.72 | 2.72 | 3.1 | 0.005 | 0.70 | 0.0 | 0.04 | 15.21 | 0.01 | 2.074 | 10.71 | 2.28 | 4.5 | 95.5 | 0.0 | 0.15 | 1.16 | 0.78 | 0.76 | 2.33 | 28717 | 3595 | 25 | 0 | 14 | 0 | 0 | logfile |
✔ | 7VH5 | 31986 | 2024-04-16 | 2021-09-21 | 3.2 | 3.35 | — | 3.3 | 0.017 | 1.53 | 0.0 | 0.07 | 18.95 | 0.01 | 1.257 | 12.04 | 0.31 | 3.5 | 96.5 | 0.0 | -2.75 | 0.68 | 0.80 | 2.58 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 16.73 | 0.00 | 2.101 | 9.80 | 0.97 | 2.8 | 97.2 | 0.0 | 1.36 | 1.18 | 0.69 | 0.78 | 1.91 | 39615 | 4824 | 12 | 0 | 52 | 0 | 0 | logfile |
✔ | 7FAE | 31502 | 2024-04-15 | 2021-07-06 | 3.65 | 3.81 | — | 3.6 | 0.010 | 1.04 | 5.0 | 0.07 | 16.58 | 0.01 | 1.041 | 15.94 | 7.89 | 9.2 | 90.1 | 0.7 | -3.13 | 0.81 | 0.72 | 1.67 | 3.6 | 0.003 | 0.75 | 0.0 | 0.05 | 15.92 | 0.00 | 2.159 | 12.40 | 3.54 | 5.4 | 94.4 | 0.1 | -0.89 | 0.96 | 0.86 | 0.81 | 1.91 | 34352 | 4318 | 29 | 0 | 62 | 0 | 0 | logfile |
✔ | 6RW4 | 10021 | 2024-04-10 | 2019-06-03 | 2.97 | 2.14 | 2.98 | 2.8 | 0.008 | 0.67 | 0.0 | 0.08 | 18.30 | 0.01 | 1.650 | 2.42 | 0.06 | 3.0 | 97.0 | 0.1 | -2.57 | 0.85 | 0.84 | 4.78 | 2.8 | 0.005 | 0.65 | 0.0 | 0.04 | 18.64 | 0.01 | 1.652 | 3.32 | 1.07 | 1.9 | 98.0 | 0.0 | 1.14 | 1.97 | 0.88 | 0.88 | 4.30 | 128080 | 5920 | 47 | 955 | 85 | 59 | 59211 | logfile |
✔ | 6NSJ | 0498 | 2024-04-06 | 2019-01-24 | 2.7 | 3.69 | 2.67 | 3.6 | 0.008 | 1.12 | 0.0 | 0.06 | 13.93 | 0.01 | 2.340 | 8.25 | 2.18 | 6.0 | 94.0 | 0.0 | -4.40 | 0.61 | 0.75 | 5.00 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.16 | 0.00 | 2.229 | 5.43 | 2.51 | 4.2 | 95.8 | 0.0 | 1.73 | 0.48 | 0.58 | 0.75 | 2.74 | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8iBX | 35348 | 2024-04-07 | 2023-02-10 | 3.74 | 4.12 | 3.87 | 3.9 | 0.004 | 0.59 | 0.0 | 0.04 | 22.08 | 0.00 | 1.982 | 10.30 | 0.79 | 4.8 | 95.0 | 0.2 | 0.88 | 0.82 | 0.81 | 1.03 | 3.9 | 0.006 | 0.71 | 0.0 | 0.04 | 22.30 | 0.00 | 2.107 | 16.28 | 4.61 | 5.5 | 94.4 | 0.1 | 0.62 | 1.17 | 0.83 | 0.82 | 1.18 | 9502 | 922 | 5 | 108 | 2 | 0 | 0 | logfile |