Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VoC	21260	2021-06-03	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	3.1	0.024	3.10	614.0	0.16	21.31	0.02	1.378	213.55	1.94	28.7	67.7	3.6	-5.88	7.31	0.26	0.13	0.01	214200	28560	180	0	0	0	0	logfile
✔	6SXo	10344	2021-06-02	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.69	0.00	2.122	10.12	0.58	3.7	96.3	0.0	-1.27	0.75	0.27	0.76	1.90	14894	973	8	326	0	0	0	logfile
✔	6REU	4857	2021-06-04	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.80	0.0	0.05	13.89	0.01	1.976	19.27	0.00	7.1	92.8	0.1	-1.97	2.26	0.27	0.21	—	33899	4503	25	0	10	0	0	logfile
✔	6X0U	21984	2021-06-01	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.42	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.004	0.68	0.0	0.04	17.99	0.01	2.223	7.50	0.58	3.7	96.3	0.0	0.64	0.87	0.27	0.78	2.48	3091	398	4	0	0	0	0	logfile
✔	6VHL	21207	2021-06-01	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	13.68	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.004	0.76	0.0	0.04	16.72	0.00	2.284	7.88	0.75	11.3	88.7	0.0	-3.77	3.57	0.27	0.70	3.44	1190	158	4	0	0	0	0	logfile
✔	6iAC	4435	2021-06-01	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.91	0.0	0.05	16.57	0.01	2.121	12.57	0.98	8.0	92.0	0.0	-0.46	1.07	0.27	0.76	0.74	8210	1057	11	0	0	0	0	logfile
✔	5MPD	3534	2021-06-04	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.67	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.81	0.0	0.04	15.48	0.00	2.083	16.44	0.02	5.7	94.1	0.2	-0.48	1.94	0.27	0.59	—	40974	5142	13	0	0	0	0	logfile
✔	6M99	9050	2021-06-04	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	6.86	0.38	5.8	94.2	0.0	-4.38	0.27	0.84	3.06	3.3	0.005	0.79	0.0	0.05	15.30	0.01	2.031	14.14	1.01	5.9	94.1	0.0	-0.56	0.74	0.28	0.86	2.42	101389	13152	14	0	2	0	0	logfile
✔	6HRE	0259	2021-06-01	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	5.59	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	3.2	0.005	0.85	0.0	0.05	17.30	0.00	2.161	8.66	0.50	7.1	92.9	0.0	-3.35	0.80	0.29	0.78	4.28	3522	462	6	0	0	0	0	logfile
✔	6K32	9907	2021-06-05	2019-05-16	3.2	3.73	—	3.8	0.009	1.21	1.0	0.08	11.35	0.01	1.345	10.08	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.75	0.0	0.05	16.56	0.01	1.397	11.52	0.56	5.5	94.5	0.0	-1.07	1.61	0.29	0.80	2.22	61364	7723	10	8	6	0	0	logfile
✔	5L08	8300	2021-06-02	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.60	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.6	0.006	1.28	0.0	0.06	15.17	0.01	1.908	43.02	0.00	7.8	92.2	0.0	-2.50	3.17	0.29	0.68	—	13617	1629	9	0	0	0	0	logfile
✔	6RJU	4906	2021-06-01	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.2	0.003	0.67	0.0	0.03	16.11	0.00	2.231	7.54	0.00	7.8	92.2	0.0	-1.37	1.76	0.29	0.06	-2.78	1992	131	1	0	0	0	997	logfile
✔	6FLQ	4275	2021-06-04	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.8	0.007	1.14	0.0	0.06	17.19	0.01	1.914	26.04	0.88	12.3	87.6	0.1	-2.43	2.36	0.30	0.27	0.14	30201	3868	10	91	3	0	0	logfile
✔	3KTT	5148	2021-06-01	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	176.10	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.10	0.0	0.05	17.02	0.01	2.030	23.77	0.00	9.4	89.4	1.2	-2.11	1.88	0.30	0.40	—	3855	513	1	0	0	0	0	logfile
✔	6QJH	4563	2021-06-01	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.005	0.61	0.0	0.05	16.12	0.00	2.300	3.36	0.00	3.5	96.5	0.0	-2.57	1.58	0.30	0.77	2.69	1302	177	3	0	0	0	0	logfile
✔	6i5A	4413	2021-06-01	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.57	0.0	0.04	16.02	0.00	2.335	4.19	2.22	2.0	98.0	0.0	2.12	1.23	0.30	0.87	4.33	1206	153	1	0	0	0	0	logfile
✔	6Z5U	11082	2021-06-02	2020-05-27	3.9	4.52	—	38.0	0.021	1.87	10.0	0.11	12.07	0.01	0.901	4.64	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.004	0.93	0.0	0.05	14.73	0.01	2.038	19.33	0.36	5.9	94.1	0.0	-0.54	1.76	0.31	0.22	0.92	17880	2334	14	0	4	0	0	logfile
✔	6R4R	4727	2021-06-01	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.83	0.0	0.05	17.25	0.01	2.106	16.34	1.36	8.6	91.4	0.0	-4.86	4.01	0.31	0.68	4.00	4312	539	7	0	0	0	0	logfile
✔	6Qi8	4552	2021-06-02	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.81	0.0	0.04	17.45	0.00	2.201	11.52	0.06	5.0	95.0	0.0	-1.61	1.62	0.31	0.21	0.00	14789	1907	12	0	6	0	0	logfile
✔	5JXL	8179	2021-06-01	2016-05-13	3.5	3.48	—	3.6	0.008	1.39	0.0	0.06	9.65	0.00	1.795	17.65	0.15	8.7	89.0	2.2	-2.06	0.30	0.77	1.70	3.5	0.003	0.78	0.0	0.04	15.85	0.00	2.100	12.48	0.55	7.4	92.2	0.4	-1.62	1.55	0.31	0.83	2.05	69993	9361	11	0	0	0	0	logfile

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