Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iAC	4435	2022-07-03	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.91	0.0	0.05	16.38	0.00	2.176	12.19	1.10	8.4	91.6	0.0	-0.57	1.03	0.26	0.76	1.25	8210	1057	11	0	0	0	0	logfile
✔	6SXo	10344	2022-07-04	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	6.10	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.64	0.00	2.121	10.83	0.70	3.3	96.7	0.0	-1.07	0.68	0.26	0.73	2.06	14894	973	8	326	0	0	0	logfile
✔	6X0U	21984	2022-07-02	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.003	0.71	0.0	0.03	17.78	0.01	2.197	6.38	0.58	3.7	96.3	0.0	1.26	0.82	0.27	0.78	2.36	3091	398	4	0	0	0	0	logfile
✔	7oG6	12879	2022-07-02	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.58	0.0	0.04	16.44	0.00	2.233	9.92	0.00	6.6	93.4	0.0	-0.04	0.54	0.27	0.84	3.04	1602	199	2	5	0	0	0	logfile
✔	6REU	4857	2022-07-06	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.47	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.009	1.01	1.0	0.05	14.11	0.01	1.882	22.18	0.03	7.6	92.3	0.1	-2.44	1.06	0.27	0.19	—	33899	4503	25	0	10	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7U15	26278	2022-07-03	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.44	0.00	1.928	11.58	3.17	16.8	83.2	0.0	-5.23	1.48	0.27	0.69	2.64	6684	405	6	0	12	0	3255	logfile
✔	5L08	8300	2022-07-04	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.3	0.006	1.30	0.0	0.06	15.18	0.01	1.868	44.25	0.00	10.6	89.4	0.0	-3.15	3.88	0.27	0.70	—	13617	1629	9	0	0	0	0	logfile
✔	6Z5U	11082	2022-07-04	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.93	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.008	0.89	1.0	0.04	14.43	0.01	2.092	11.99	0.15	4.7	95.2	0.0	-0.06	1.51	0.27	0.13	0.35	17880	2334	14	0	4	0	0	logfile
✔	7U13	26276	2022-07-03	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.016	1.69	0.0	0.06	18.32	0.01	1.980	40.70	3.15	11.0	89.0	0.0	-3.17	3.39	0.28	0.50	1.09	3456	405	6	0	12	0	0	logfile
✔	7ABK	11698	2022-07-02	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.67	0.0	0.03	19.97	0.01	2.302	7.56	0.62	2.1	97.9	0.0	5.19	1.33	0.28	0.85	1.55	1574	196	1	0	0	0	0	logfile
✔	6M99	9050	2022-07-06	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	7.02	0.38	5.8	94.2	0.0	-4.38	0.27	0.85	3.06	3.3	0.006	0.86	1.0	0.05	15.09	0.01	1.736	16.85	0.37	5.7	94.3	0.0	-0.69	0.71	0.28	0.87	2.46	101389	13152	14	0	2	0	0	logfile
✔	6VHL	21207	2022-07-02	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	16.17	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.004	0.78	0.0	0.04	16.88	0.01	2.268	10.36	0.00	11.3	88.7	0.0	-3.65	2.64	0.28	0.69	3.54	1190	158	4	0	0	0	0	logfile
✔	5MPD	3534	2022-07-07	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.010	1.18	2.0	0.05	15.58	0.01	1.051	28.38	0.00	7.6	92.2	0.3	-1.78	1.92	0.28	0.63	—	40974	5142	13	0	0	0	0	logfile
✔	7UiU	26553	2022-07-02	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	4.19	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.95	0.0	0.04	17.47	0.00	2.262	11.74	1.67	6.0	94.0	0.0	-1.79	1.38	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7P3R	13185	2022-07-03	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.003	0.58	0.0	0.04	14.64	0.00	2.165	4.67	0.56	2.1	97.9	0.0	3.57	0.56	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	6Qi8	4552	2022-07-04	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.30	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.79	0.0	0.04	17.50	0.00	2.186	11.19	0.38	6.1	93.9	0.0	-1.55	1.45	0.30	0.19	0.26	14789	1907	12	0	6	0	0	logfile
✔	5JXL	8179	2022-07-04	2016-05-13	3.5	3.48	—	3.6	0.008	1.38	0.0	0.06	9.65	0.00	1.795	18.18	0.15	8.7	89.0	2.2	-2.06	0.30	0.77	1.70	3.5	0.005	0.87	0.0	0.05	15.93	0.01	2.104	13.41	0.83	8.0	91.6	0.4	-1.86	1.53	0.30	0.83	2.04	69993	9361	11	0	0	0	0	logfile
✔	6i5A	4413	2022-07-02	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	6HRE	0259	2022-07-03	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.57	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.50	0.50	9.3	90.7	0.0	-3.49	0.81	0.30	0.78	3.87	3522	462	6	0	0	0	0	logfile

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