Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oG6	12879	2021-09-02	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.61	0.0	0.04	16.34	0.00	2.253	7.36	0.00	6.1	93.9	0.0	-0.13	0.55	0.27	0.83	2.33	1602	199	2	5	0	0	0	logfile
✔	6X0U	21984	2021-09-02	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.42	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.003	0.68	0.0	0.04	17.80	0.01	2.228	7.34	0.29	3.7	96.3	0.0	1.18	0.86	0.27	0.78	2.60	3091	398	4	0	0	0	0	logfile
✔	6REU	4857	2021-09-05	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.85	0.0	0.05	14.11	0.01	1.983	21.95	0.03	7.1	92.8	0.1	-2.12	1.96	0.27	0.21	—	33899	4503	25	0	10	0	0	logfile
✔	6SXo	10344	2021-09-03	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.002	0.57	0.0	0.03	16.61	0.00	2.131	10.38	0.35	3.3	96.7	0.0	-1.04	0.77	0.27	0.76	2.02	14894	973	8	326	0	0	0	logfile
✔	6VHL	21207	2021-09-02	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	13.68	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.004	0.82	0.0	0.04	16.84	0.01	2.277	9.12	1.49	9.3	90.7	0.0	-3.51	2.75	0.27	0.67	3.28	1190	158	4	0	0	0	0	logfile
✔	6iAC	4435	2021-09-02	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.88	0.0	0.05	16.58	0.00	2.147	11.17	0.24	8.6	91.4	0.0	-0.45	1.06	0.27	0.76	0.99	8210	1057	11	0	0	0	0	logfile
✔	5L08	8300	2021-09-03	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.60	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.4	0.006	1.32	0.0	0.06	15.27	0.01	1.926	43.34	0.00	7.3	92.7	0.0	-3.08	3.87	0.27	0.66	—	13617	1629	9	0	0	0	0	logfile
✔	5MPD	3534	2021-09-06	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.67	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.84	0.0	0.04	15.43	0.00	2.100	19.02	0.07	6.4	93.5	0.2	-0.90	1.96	0.28	0.61	—	40974	5142	13	0	0	0	0	logfile
✔	7ABK	11698	2021-09-02	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.80	0.0	0.04	20.02	0.00	2.241	5.67	2.47	2.6	97.4	0.0	4.26	1.36	0.28	0.86	1.04	1574	196	1	0	0	0	0	logfile
✔	6M99	9050	2021-09-07	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	6.86	0.38	5.8	94.2	0.0	-4.38	0.27	0.84	3.06	3.3	0.004	0.78	0.0	0.05	15.18	0.01	2.043	13.92	0.78	5.6	94.4	0.0	-0.50	0.73	0.28	0.86	2.31	101389	13152	14	0	2	0	0	logfile
✔	6HRE	0259	2021-09-02	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	5.59	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	3.3	0.004	0.79	0.0	0.05	17.07	0.00	2.194	6.99	0.50	5.8	94.2	0.0	-3.28	0.79	0.29	0.77	3.95	3522	462	6	0	0	0	0	logfile
✔	5JXL	8179	2021-09-04	2016-05-13	3.5	3.48	—	3.6	0.008	1.39	0.0	0.06	9.65	0.00	1.795	17.65	0.15	8.7	89.0	2.2	-2.06	0.30	0.77	1.70	3.5	0.004	0.80	0.0	0.04	15.91	0.00	2.099	13.30	1.07	7.7	92.0	0.4	-1.46	1.56	0.30	0.83	2.04	69993	9361	11	0	0	0	0	logfile
✔	6QJH	4563	2021-09-02	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.62	0.0	0.05	15.67	0.00	2.248	3.74	0.00	2.3	97.7	0.0	-2.64	1.57	0.30	0.77	3.00	1302	177	3	0	0	0	0	logfile
✔	6RJU	4906	2021-09-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	6i5A	4413	2021-09-02	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.58	0.0	0.04	15.98	0.00	2.333	4.19	2.22	1.3	98.7	0.0	2.22	1.22	0.30	0.87	4.33	1206	153	1	0	0	0	0	logfile
✔	6Q97	4476	2021-09-12	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	0.96	2.0	0.05	20.64	0.01	1.041	22.12	0.12	9.7	90.3	0.0	-3.62	2.64	0.31	0.25	0.31	156609	6124	72	5051	441	2	0	logfile
✔	6K32	9907	2021-09-03	2019-05-16	3.2	3.73	—	3.8	0.009	1.19	1.0	0.08	11.34	0.01	1.345	10.08	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.76	0.0	0.05	16.51	0.01	1.348	11.88	0.64	5.8	94.2	0.1	-1.28	1.37	0.31	0.82	2.35	61364	7723	10	8	6	0	0	logfile
✔	6R4R	4727	2021-09-02	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.83	0.0	0.05	17.60	0.01	2.131	16.46	0.68	8.6	91.4	0.0	-4.80	4.02	0.31	0.67	3.52	4312	539	7	0	0	0	0	logfile
✔	3KTT	5148	2021-09-02	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	176.10	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.007	1.18	0.0	0.05	17.26	0.01	2.046	27.09	0.49	10.8	88.3	1.0	-2.28	1.90	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	6DLU	7957	2021-09-03	2018-06-02	3.75	3.84	—	3.8	0.011	0.87	0.0	0.05	9.97	0.00	1.944	12.31	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.65	0.0	0.04	14.14	0.00	2.010	8.94	0.23	4.7	95.3	0.0	0.18	2.36	0.32	0.81	1.53	11991	1481	4	0	4	0	0	logfile

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