Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RED	4850	2022-12-18	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.89	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.003	0.69	0.0	0.04	15.73	0.00	1.878	15.90	1.91	4.2	95.7	0.1	-0.48	0.94	0.23	0.13	0.37	33899	4503	25	0	10	0	0	logfile
✔	7FG3	31577	2022-12-12	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.91	0.0	0.05	16.70	0.01	2.098	25.10	0.40	15.9	83.5	0.5	-3.58	0.78	0.23	0.45	-0.23	9054	1166	2	0	0	0	0	logfile
✔	7KU5	23034	2022-12-11	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✔	6REU	4857	2022-12-18	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.47	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.003	0.77	0.0	0.05	13.96	0.00	1.871	17.84	0.00	6.1	93.8	0.1	-1.72	1.51	0.26	0.17	—	33899	4503	25	0	10	0	0	logfile
✔	6SXo	10344	2022-12-13	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	6.10	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.64	0.00	2.121	10.83	0.70	3.3	96.7	0.0	-1.07	0.68	0.26	0.77	2.06	14894	973	8	326	0	0	0	logfile
✔	6iAC	4435	2022-12-11	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.92	0.0	0.05	16.36	0.01	2.075	12.76	0.37	8.6	91.4	0.0	-0.81	1.04	0.26	0.76	1.41	8210	1057	11	0	0	0	0	logfile
✔	6RJU	4906	2022-12-11	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	5L08	8300	2022-12-13	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.3	0.005	1.32	0.0	0.07	14.88	0.01	1.958	41.68	0.00	7.8	92.2	0.0	-3.36	3.87	0.27	0.72	—	13617	1629	9	0	0	0	0	logfile
✔	7oG6	12879	2022-12-11	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.58	0.0	0.04	16.44	0.00	2.233	9.92	0.00	6.6	93.4	0.0	-0.04	0.54	0.27	0.84	3.04	1602	199	2	5	0	0	0	logfile
✔	6VHL	21207	2022-12-11	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	16.17	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.003	0.73	0.0	0.04	16.47	0.00	2.338	9.12	0.75	10.7	89.3	0.0	-3.61	2.63	0.27	0.69	3.44	1190	158	4	0	0	0	0	logfile
✔	6X0U	21984	2022-12-11	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.03	17.56	0.00	2.197	6.86	0.29	2.9	97.1	0.0	1.58	0.81	0.27	0.78	2.25	3091	398	4	0	0	0	0	logfile
✔	7U15	26278	2022-12-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.44	0.00	1.928	11.58	3.17	16.8	83.2	0.0	-5.23	1.48	0.27	0.70	2.64	6684	405	6	0	12	0	3255	logfile
✔	5MPD	3534	2022-12-21	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.79	0.0	0.04	15.38	0.00	2.021	16.92	0.04	5.6	94.2	0.2	-0.45	1.30	0.27	0.61	—	40974	5142	13	0	0	0	0	logfile
✔	6FLQ	4275	2022-12-16	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.7	0.005	0.89	0.0	0.05	16.99	0.01	1.960	18.18	0.55	10.5	89.4	0.1	-1.71	2.06	0.28	0.23	0.03	30201	3868	10	91	3	0	0	logfile
✔	7UiU	26553	2022-12-11	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	4.19	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.95	0.0	0.04	17.47	0.00	2.262	11.74	1.67	6.0	94.0	0.0	-1.79	1.38	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7ABK	11698	2022-12-11	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.66	0.0	0.03	19.91	0.00	2.304	7.87	0.00	2.1	97.9	0.0	5.18	1.55	0.28	0.85	1.35	1574	196	1	0	0	0	0	logfile
✔	6Z5U	11082	2022-12-13	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.76	0.0	0.04	14.53	0.00	1.928	14.28	0.41	5.2	94.8	0.0	-0.62	1.59	0.29	0.18	0.56	17880	2334	14	0	4	0	0	logfile
✔	7W6P	32331	2022-12-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.77	0.00	2.196	14.90	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	9.2	0.002	0.63	0.0	0.04	15.18	0.00	2.193	12.74	0.22	4.7	95.3	0.0	-0.44	1.88	0.29	0.20	0.86	8408	1083	5	0	1	0	0	logfile
✔	7P3R	13185	2022-12-11	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.003	0.58	0.0	0.04	14.64	0.00	2.165	4.67	0.56	2.1	97.9	0.0	3.57	0.56	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	7U11	26274	2022-12-11	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.3	0.005	0.74	0.0	0.06	17.39	0.00	2.138	11.92	0.26	10.0	90.0	0.0	-3.49	1.44	0.29	0.68	3.96	3456	405	6	0	12	0	0	logfile

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