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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RED | 4850 | 2022-12-18 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.89 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.003 | 0.69 | 0.0 | 0.04 | 15.73 | 0.00 | 1.878 | 15.90 | 1.91 | 4.2 | 95.7 | 0.1 | -0.48 | 0.94 | 0.23 | 0.13 | 0.37 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2022-12-12 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.34 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.91 | 0.0 | 0.05 | 16.70 | 0.01 | 2.098 | 25.10 | 0.40 | 15.9 | 83.5 | 0.5 | -3.58 | 0.78 | 0.23 | 0.45 | -0.23 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KU5 | 23034 | 2022-12-11 | 2020-11-24 | 3.76 | 3.63 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 14.85 | 0.01 | 2.420 | 3.63 | 0.00 | 12.8 | 87.2 | 0.0 | -5.41 | 0.23 | 0.65 | -0.48 | 3.9 | 0.002 | 0.73 | 0.0 | 0.04 | 16.42 | 0.01 | 2.247 | 10.16 | 0.00 | 10.5 | 89.5 | 0.0 | -1.80 | 1.30 | 0.25 | 0.68 | 2.01 | 750 | 88 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2022-12-18 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.07 | 0.01 | 1.681 | 9.47 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.003 | 0.77 | 0.0 | 0.05 | 13.96 | 0.00 | 1.871 | 17.84 | 0.00 | 6.1 | 93.8 | 0.1 | -1.72 | 1.51 | 0.26 | 0.17 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6SXo | 10344 | 2022-12-13 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 16.45 | 0.01 | 2.142 | 6.10 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.003 | 0.59 | 0.0 | 0.03 | 16.64 | 0.00 | 2.121 | 10.83 | 0.70 | 3.3 | 96.7 | 0.0 | -1.07 | 0.68 | 0.26 | 0.77 | 2.06 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✔ | 6iAC | 4435 | 2022-12-11 | 2018-11-26 | 3.9 | 4.05 | — | 4.0 | 0.009 | 1.31 | 0.0 | 0.07 | 12.35 | 0.01 | 2.250 | 5.01 | 1.10 | 12.0 | 87.9 | 0.2 | -4.54 | 0.26 | 0.77 | 1.92 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.36 | 0.01 | 2.075 | 12.76 | 0.37 | 8.6 | 91.4 | 0.0 | -0.81 | 1.04 | 0.26 | 0.76 | 1.41 | 8210 | 1057 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2022-12-11 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 5L08 | 8300 | 2022-12-13 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.3 | 0.005 | 1.32 | 0.0 | 0.07 | 14.88 | 0.01 | 1.958 | 41.68 | 0.00 | 7.8 | 92.2 | 0.0 | -3.36 | 3.87 | 0.27 | 0.72 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oG6 | 12879 | 2022-12-11 | 2021-05-06 | 3.3 | 3.47 | — | 2.9 | 0.008 | 0.82 | 0.0 | 0.04 | 17.33 | 0.01 | 2.325 | 7.36 | 6.10 | 9.6 | 90.4 | 0.0 | -4.47 | 0.28 | 0.82 | 2.77 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 16.44 | 0.00 | 2.233 | 9.92 | 0.00 | 6.6 | 93.4 | 0.0 | -0.04 | 0.54 | 0.27 | 0.84 | 3.04 | 1602 | 199 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 6VHL | 21207 | 2022-12-11 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 16.17 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 16.47 | 0.00 | 2.338 | 9.12 | 0.75 | 10.7 | 89.3 | 0.0 | -3.61 | 2.63 | 0.27 | 0.69 | 3.44 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2022-12-11 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.69 | 0.0 | 0.03 | 17.56 | 0.00 | 2.197 | 6.86 | 0.29 | 2.9 | 97.1 | 0.0 | 1.58 | 0.81 | 0.27 | 0.78 | 2.25 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U15 | 26278 | 2022-12-11 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.18 | 0.0 | 0.12 | 17.37 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.74 | 0.0 | 0.11 | 17.44 | 0.00 | 1.928 | 11.58 | 3.17 | 16.8 | 83.2 | 0.0 | -5.23 | 1.48 | 0.27 | 0.70 | 2.64 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 5MPD | 3534 | 2022-12-21 | 2016-12-16 | 4.1 | 4.14 | — | 4.1 | 0.035 | 3.40 | 330.0 | 0.20 | 17.76 | 0.03 | 0.656 | 3.85 | 2.78 | 5.6 | 92.3 | 2.1 | -2.14 | 0.21 | 0.37 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 15.38 | 0.00 | 2.021 | 16.92 | 0.04 | 5.6 | 94.2 | 0.2 | -0.45 | 1.30 | 0.27 | 0.61 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2022-12-16 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 16.99 | 0.01 | 1.960 | 18.18 | 0.55 | 10.5 | 89.4 | 0.1 | -1.71 | 2.06 | 0.28 | 0.23 | 0.03 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 7UiU | 26553 | 2022-12-11 | 2022-03-29 | 2.8 | 3.11 | 2.72 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 13.60 | 0.00 | 2.356 | 4.19 | 0.00 | 4.8 | 95.2 | 0.0 | -2.09 | 0.28 | 0.82 | 1.99 | 3.3 | 0.004 | 0.95 | 0.0 | 0.04 | 17.47 | 0.00 | 2.262 | 11.74 | 1.67 | 6.0 | 94.0 | 0.0 | -1.79 | 1.38 | 0.28 | 0.89 | 2.33 | 607 | 85 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ABK | 11698 | 2022-12-11 | 2020-09-07 | 3.6 | 4.10 | 3.49 | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 16.30 | 0.00 | 2.315 | 5.67 | 1.23 | 1.5 | 98.5 | 0.0 | 0.91 | 0.28 | 0.87 | 1.10 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 19.91 | 0.00 | 2.304 | 7.87 | 0.00 | 2.1 | 97.9 | 0.0 | 5.18 | 1.55 | 0.28 | 0.85 | 1.35 | 1574 | 196 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-12-13 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 14.53 | 0.00 | 1.928 | 14.28 | 0.41 | 5.2 | 94.8 | 0.0 | -0.62 | 1.59 | 0.29 | 0.18 | 0.56 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2022-12-12 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.69 | 0.0 | 0.04 | 13.77 | 0.00 | 2.196 | 14.90 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 9.2 | 0.002 | 0.63 | 0.0 | 0.04 | 15.18 | 0.00 | 2.193 | 12.74 | 0.22 | 4.7 | 95.3 | 0.0 | -0.44 | 1.88 | 0.29 | 0.20 | 0.86 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7P3R | 13185 | 2022-12-11 | 2021-07-08 | 3.65 | 3.16 | 3.57 | 3.5 | 0.006 | 0.81 | 1.0 | 0.05 | 13.66 | 0.01 | 2.306 | 1.88 | 0.28 | 2.7 | 97.3 | 0.0 | -3.67 | 0.30 | 0.70 | 1.05 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.64 | 0.00 | 2.165 | 4.67 | 0.56 | 2.1 | 97.9 | 0.0 | 3.57 | 0.56 | 0.29 | 0.64 | 1.05 | 7738 | 1338 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U11 | 26274 | 2022-12-11 | 2022-02-19 | 3.2 | 2.77 | — | 3.4 | 0.004 | 0.67 | 0.0 | 0.06 | 16.16 | 0.00 | 2.186 | 14.68 | 2.36 | 6.0 | 94.0 | 0.0 | -2.79 | 0.29 | 0.64 | 3.31 | 3.3 | 0.005 | 0.74 | 0.0 | 0.06 | 17.39 | 0.00 | 2.138 | 11.92 | 0.26 | 10.0 | 90.0 | 0.0 | -3.49 | 1.44 | 0.29 | 0.68 | 3.96 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |