Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DA4	30622	2022-12-11	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	5MPE	3535	2022-12-21	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.98	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.003	0.80	0.0	0.04	14.92	0.00	1.932	18.88	0.00	5.5	94.2	0.3	-0.54	2.08	0.36	0.67	—	40974	5142	13	0	0	0	0	logfile
✔	6TJo	10512	2022-12-11	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.78	3.90	2439	321	3	0	0	0	0	logfile
✔	7N5F	24188	2022-12-11	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.36	0.78	3.26	3037	386	1	0	1	0	0	logfile
✔	7QJX	14025	2022-12-13	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.004	1.21	0.0	0.31	16.23	0.00	2.142	3.83	1.41	5.8	94.2	0.0	-3.64	2.47	0.36	0.78	3.29	13860	900	12	0	0	0	7056	logfile
✔	7QKJ	14044	2022-12-11	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.78	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.003	0.73	0.0	0.05	15.51	0.00	2.138	10.82	0.25	6.1	93.9	0.0	-2.72	1.10	0.36	0.84	2.67	6888	900	12	0	0	0	0	logfile
✔	7U16	26279	2022-12-11	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.14	0.79	5.8	94.2	0.0	-2.64	1.73	0.36	0.80	4.99	3456	405	6	0	12	0	0	logfile
✔	7QKG	14041	2022-12-11	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7QJY	14026	2022-12-11	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.008	0.87	0.0	0.05	17.16	0.01	2.116	9.11	1.26	3.4	96.6	0.0	-2.45	3.42	0.36	0.83	4.60	3444	450	6	0	0	0	0	logfile
✔	7QK5	14038	2022-12-12	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.67	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.34	0.01	2.238	4.68	2.74	3.7	96.3	0.0	-1.87	1.49	0.36	0.82	7.41	10485	666	18	0	36	0	5337	logfile
✔	7VZF	32227	2022-12-11	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	6ZGA	11199	2022-12-15	2020-06-18	4.6	5.12	4.44	4.9	0.011	1.53	0.0	0.08	14.65	0.01	2.071	13.24	0.07	10.1	89.7	0.2	-3.01	0.41	0.70	—	4.9	0.006	0.86	0.0	0.05	13.86	0.01	1.950	29.55	0.00	9.3	90.5	0.2	-1.88	2.01	0.37	0.70	—	26963	3413	14	0	8	0	0	logfile
✔	7QL1	14060	2022-12-11	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	1.47	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.004	0.73	0.0	0.05	15.67	0.00	2.155	10.56	0.00	3.3	96.7	0.0	-2.40	1.74	0.37	0.79	4.22	1671	219	3	0	0	0	0	logfile
✔	7QKV	14054	2022-12-12	2021-12-19	3.23	2.84	3.19	3.3	0.011	1.92	0.0	0.09	12.28	0.02	2.512	0.73	0.00	3.5	96.5	0.0	-2.11	0.37	0.72	4.94	3.2	0.003	0.60	0.0	0.05	15.70	0.01	2.050	10.55	0.19	4.0	96.0	0.0	-2.69	1.61	0.37	0.80	5.44	9585	621	9	0	0	0	4887	logfile
✔	7QWG	14187	2022-12-11	2022-01-25	3.38	3.26	2.98	3.3	0.012	2.34	10.0	0.15	14.89	0.01	2.525	0.77	0.26	10.0	90.0	0.0	-3.26	0.41	0.82	4.16	3.3	0.005	0.78	0.0	0.05	17.03	0.00	2.189	10.29	0.79	12.8	87.2	0.0	-3.71	2.40	0.37	0.84	3.82	3258	405	3	0	0	0	0	logfile
✔	7WHN	32505	2022-12-12	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.75	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.04	0.00	2.281	5.47	0.19	2.7	97.3	0.0	0.87	0.39	0.37	0.81	2.12	9284	1170	1	0	0	0	0	logfile
✔	7XiZ	33213	2022-12-11	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.10	0.0	0.06	18.15	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.82	0.0	0.05	18.16	0.01	2.215	14.34	0.43	16.6	82.6	0.8	-3.64	1.53	0.37	0.73	1.52	2161	267	1	0	2	0	0	logfile
✔	5L4K	4002	2022-12-15	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.08	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.003	0.76	0.0	0.04	17.33	0.00	1.807	15.67	0.55	8.2	91.3	0.5	-1.41	1.81	0.37	0.70	0.19	79649	5000	12	0	0	0	39990	logfile
✔	7DNH	30783	2022-12-14	2020-12-09	3.64	4.22	—	4.2	0.008	1.08	0.0	0.06	15.01	0.01	1.791	6.23	0.78	9.6	90.2	0.2	-4.48	0.39	0.79	2.34	4.2	0.004	0.76	0.0	0.05	16.25	0.00	2.147	12.85	0.37	7.3	92.7	0.0	-2.45	1.30	0.37	0.78	1.87	21788	2762	7	0	0	0	0	logfile
✔	5H0R	9564	2022-12-13	2016-10-06	3.9	3.72	—	3.7	0.008	0.81	0.0	0.05	10.30	0.00	1.744	20.03	0.28	8.5	91.4	0.1	-4.11	0.33	0.70	1.99	3.7	0.003	0.77	0.0	0.04	15.48	0.00	2.099	16.21	0.49	7.3	92.5	0.2	-1.14	1.22	0.37	0.76	2.12	15037	1656	4	84	0	0	0	logfile

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