Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q27	18070	2023-11-14	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.002	0.54	0.0	0.05	17.00	0.00	2.208	1.57	0.51	2.5	97.5	0.0	-1.37	1.20	0.34	0.88	7.21	7002	453	6	0	0	0	3567	logfile
✔	7YNP	33968	2023-11-13	2022-07-31	2.8	2.38	2.15	3.4	0.012	0.97	0.0	0.06	13.69	0.00	2.265	10.48	0.00	6.5	93.5	0.0	-3.88	0.39	0.78	4.28	3.5	0.005	0.54	0.0	0.05	14.75	0.00	2.231	7.81	2.71	5.4	94.6	0.0	-2.18	1.78	0.34	0.80	4.85	2568	366	8	0	2	0	0	logfile
✔	6M7D	30129	2023-11-13	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.51	0.0	0.04	15.72	0.00	2.232	8.89	1.46	1.5	98.5	0.0	2.16	0.85	0.34	0.88	3.05	3280	412	2	6	0	0	0	logfile
✔	7PAG	13269	2023-11-13	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.86	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.63	0.00	2.144	20.38	0.23	10.5	89.5	0.0	-3.28	1.36	0.34	0.68	—	4040	509	1	0	4	0	0	logfile
✔	6XTB	10618	2023-11-13	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7QKZ	14058	2023-11-13	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.60	0.01	2.257	11.23	0.00	1.2	98.8	0.0	-0.53	5.08	0.34	0.64	6.63	1701	99	9	0	0	0	891	logfile
✔	5M3L	3434	2023-11-17	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.31	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.004	0.76	0.0	0.04	16.98	0.00	2.103	11.84	1.08	5.3	94.5	0.2	-0.26	0.89	0.34	0.75	1.29	19007	2394	27	0	12	0	0	logfile
✔	7U12	26275	2023-11-13	2022-02-19	3.5	3.59	—	4.4	0.011	1.06	0.0	0.07	17.19	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.2	0.004	0.87	0.0	0.06	16.27	0.00	2.121	14.51	0.26	9.5	90.5	0.0	-3.80	2.93	0.34	0.56	1.78	3456	405	6	0	12	0	0	logfile
✔	7QKK	14045	2023-11-13	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.41	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.67	0.0	0.05	17.21	0.00	2.149	11.32	1.01	7.7	92.3	0.0	-3.49	2.18	0.34	0.79	3.16	3537	228	3	0	0	0	1803	logfile
✔	7T4F	25675	2023-11-14	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.003	0.52	0.0	0.05	15.29	0.00	2.217	4.40	1.41	0.6	99.4	0.0	0.30	0.37	0.34	0.80	4.44	7224	980	4	0	0	0	0	logfile
✔	6TJo	10512	2023-11-13	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.003	0.74	0.0	0.05	12.71	0.00	2.308	6.81	0.00	5.4	94.6	0.0	-3.46	1.41	0.34	0.75	4.46	2439	321	3	0	0	0	0	logfile
✔	7TUi	26132	2023-11-19	2022-02-02	2.66	2.87	—	2.9	0.005	0.87	0.0	0.05	12.34	0.01	2.034	16.42	0.00	6.8	92.8	0.4	-2.00	0.35	0.69	2.57	2.9	0.003	0.68	0.0	0.04	15.92	0.00	2.085	14.18	1.33	6.1	93.6	0.3	-1.06	1.19	0.34	0.73	2.39	27380	3466	2	0	1	0	0	logfile
✔	7Q3U	13795	2023-11-13	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.92	0.0	0.04	18.42	0.01	2.192	28.03	0.00	14.8	85.2	0.0	-6.03	2.22	0.34	0.60	2.69	2355	355	5	0	0	0	0	logfile
✔	6YBV	10774	2023-11-14	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.005	0.88	0.0	0.05	18.58	0.00	2.023	21.36	1.07	11.7	88.2	0.1	-2.80	3.36	0.34	0.59	0.70	6731	769	5	78	0	0	0	logfile
✔	5Li4	4052	2023-11-17	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7YNG	33961	2023-11-13	2022-07-30	3.1	3.08	2.33	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.002	0.51	0.0	0.05	14.89	0.00	2.286	6.32	0.00	4.9	95.1	0.0	-1.98	0.36	0.34	0.74	3.39	2628	378	6	0	0	0	0	logfile
✔	8Q9K	18284	2023-11-13	2023-08-20	3.2	3.24	3.02	3.3	0.011	2.00	0.0	0.09	9.09	0.01	2.527	0.79	0.00	5.1	94.9	0.0	-1.94	0.39	0.82	6.44	3.2	0.003	0.57	0.0	0.05	14.49	0.00	2.134	4.92	0.56	3.5	96.5	0.0	-1.36	2.69	0.35	0.84	5.27	6306	408	6	0	0	0	3216	logfile
✔	8GWB	34308	2023-11-18	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.73	0.0	0.04	16.78	0.01	2.097	16.95	2.56	7.1	92.8	0.1	-1.58	1.60	0.35	0.15	0.37	21879	2655	16	54	10	7	0	logfile
✔	6ZMS	11300	2023-11-15	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.004	0.64	0.0	0.04	15.70	0.00	2.031	5.57	0.14	6.2	93.4	0.4	-1.93	1.76	0.35	0.84	3.57	12570	818	4	0	0	0	6173	logfile
✔	7UN5	26613	2023-11-13	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	11.64	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.77	0.0	0.04	15.18	0.00	2.237	10.71	0.77	8.5	91.5	0.0	-3.92	0.47	0.35	0.74	4.54	4380	620	10	0	0	0	0	logfile

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