Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WHN	32505	2022-07-03	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.75	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.01	0.00	2.268	5.58	0.19	2.4	97.6	0.0	1.01	0.40	0.37	0.80	2.24	9284	1170	1	0	0	0	0	logfile
✔	5H0R	9564	2022-07-04	2016-10-06	3.9	3.72	—	3.7	0.008	0.81	0.0	0.05	10.30	0.00	1.744	20.03	0.28	8.5	91.4	0.1	-4.11	0.33	0.70	1.99	3.7	0.005	0.82	0.0	0.04	15.36	0.01	2.089	17.41	0.76	7.3	92.5	0.2	-1.19	1.23	0.37	0.77	2.02	15037	1656	4	84	0	0	0	logfile
✔	5L4K	4002	2022-07-05	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.08	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.010	1.05	1.0	0.04	17.35	0.01	1.822	21.96	0.55	9.2	90.3	0.6	-2.49	1.25	0.37	0.69	0.23	79649	5000	12	0	0	0	39990	logfile
✔	7U16	26279	2022-07-03	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.14	0.79	5.8	94.2	0.0	-2.64	1.73	0.37	0.80	4.99	3456	405	6	0	12	0	0	logfile
✔	7QK2	14029	2022-07-03	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.76	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.99	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	7FG2	31574	2022-07-03	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.69	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.77	0.0	0.05	14.71	0.00	2.116	18.60	0.00	13.7	86.0	0.3	-2.76	0.71	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile
✔	7QJZ	14027	2022-07-03	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.58	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.5	0.007	0.94	0.0	0.05	14.91	0.01	2.245	13.22	1.54	13.0	87.0	0.0	-3.56	4.14	0.37	0.77	4.48	3378	444	6	0	0	0	0	logfile
✔	6HRF	0260	2022-07-03	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	7QL1	14060	2022-07-02	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	1.47	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.004	0.73	0.0	0.05	15.67	0.00	2.155	10.56	0.00	3.3	96.7	0.0	-2.40	1.74	0.37	0.79	4.22	1671	219	3	0	0	0	0	logfile
✔	6QJQ	4566	2022-07-02	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	6CU7	7618	2022-07-03	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	7QKV	14054	2022-07-03	2021-12-19	3.23	2.84	3.19	3.3	0.011	1.92	0.0	0.09	12.28	0.02	2.512	0.73	0.00	3.5	96.5	0.0	-2.11	0.37	0.72	4.94	3.2	0.003	0.60	0.0	0.05	15.70	0.01	2.050	10.55	0.19	4.0	96.0	0.0	-2.69	1.61	0.38	0.80	5.44	9585	621	9	0	0	0	4887	logfile
✔	6L31	0816	2022-07-04	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.92	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.004	0.82	0.0	0.05	13.92	0.01	2.059	22.44	0.09	9.8	90.2	0.0	-2.78	2.41	0.38	0.71	—	20905	2670	6	0	0	0	0	logfile
✔	6H5i	0140	2022-07-02	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.005	0.83	0.0	0.04	15.12	0.01	1.992	18.45	0.63	4.7	95.3	0.0	0.75	1.92	0.38	0.26	0.19	43900	5392	26	0	0	0	0	logfile
✔	7QWG	14187	2022-07-03	2022-01-25	3.38	3.26	2.98	3.3	0.012	2.34	10.0	0.15	14.89	0.01	2.525	0.77	0.26	10.0	90.0	0.0	-3.26	0.41	0.82	4.16	3.3	0.004	0.75	0.0	0.05	16.86	0.00	2.210	9.37	0.79	11.3	88.7	0.0	-3.53	2.41	0.38	0.83	3.45	3258	405	3	0	0	0	0	logfile
✔	7DNL	30787	2022-07-05	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.70	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.004	0.74	0.0	0.05	13.70	0.01	2.075	16.77	0.08	8.3	91.7	0.0	-2.47	0.75	0.38	0.78	—	21847	2769	7	0	0	0	0	logfile
✔	7QK6	14039	2022-07-02	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.57	0.0	0.05	15.85	0.00	2.385	4.06	0.69	5.8	94.2	0.0	-2.20	1.44	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7ELH	31183	2022-07-04	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	12.97	0.00	1.043	9.27	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.004	0.54	0.0	0.04	14.71	0.00	1.860	28.56	0.43	4.3	95.7	0.0	1.12	1.15	0.38	0.89	2.63	114995	13378	27	310	1	0	3098	logfile
✔	4V1A	2787	2022-07-06	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.20	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.005	0.86	0.0	0.04	16.95	0.01	2.090	12.13	0.35	4.4	95.5	0.1	0.35	1.90	0.38	0.77	1.61	31917	3843	24	0	94	0	0	logfile
✔	7QWM	14189	2022-07-03	2022-01-25	2.76	2.21	2.43	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.62	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.004	0.70	0.0	0.05	18.21	0.00	2.103	9.84	0.53	6.8	93.2	0.0	-2.77	0.60	0.38	0.82	6.27	3255	405	3	0	0	0	0	logfile

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