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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8JMT | 36426 | 2024-03-10 | 2023-06-05 | 3.3 | 3.55 | 3.41 | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 14.38 | 0.00 | 2.204 | 8.56 | 0.00 | 3.5 | 96.5 | 0.0 | -0.01 | 0.35 | 0.59 | 1.38 | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 16.44 | 0.00 | 2.245 | 10.12 | 0.99 | 3.5 | 96.5 | 0.0 | 1.56 | 1.17 | 0.32 | 0.60 | 1.22 | 1894 | 234 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TiB | 41283 | 2024-03-10 | 2023-07-19 | 3.47 | 3.73 | 3.31 | 3.7 | 0.003 | 0.62 | 0.0 | 0.05 | 16.69 | 0.00 | 2.328 | 7.86 | 0.34 | 6.2 | 93.8 | 0.0 | -1.60 | 0.32 | 0.87 | 1.51 | 3.7 | 0.002 | 0.47 | 0.0 | 0.04 | 16.66 | 0.00 | 2.289 | 5.67 | 5.10 | 5.7 | 94.1 | 0.3 | -0.88 | 0.28 | 0.32 | 0.87 | 1.53 | 2667 | 393 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q92 | 18268 | 2024-03-10 | 2023-08-19 | 3.05 | 2.89 | 2.63 | 3.1 | 0.008 | 1.37 | 0.0 | 0.09 | 13.95 | 0.01 | 2.531 | 0.94 | 1.23 | 8.7 | 91.3 | 0.0 | -3.17 | 0.37 | 0.86 | 4.77 | 3.1 | 0.006 | 0.79 | 0.0 | 0.06 | 15.47 | 0.00 | 2.335 | 5.38 | 2.06 | 8.7 | 91.3 | 0.0 | -2.87 | 0.27 | 0.32 | 0.84 | 3.70 | 2091 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJP | 4565 | 2024-03-10 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 13.24 | 0.00 | 2.357 | 11.00 | 2.94 | 2.2 | 97.8 | 0.0 | -3.28 | 1.60 | 0.32 | 0.73 | 3.79 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2024-03-10 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.003 | 0.65 | 0.0 | 0.05 | 14.65 | 0.00 | 2.267 | 8.57 | 8.33 | 5.7 | 94.3 | 0.0 | -3.42 | 3.09 | 0.32 | 0.72 | 2.44 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2024-03-15 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.95 | 0.0 | 0.05 | 11.14 | 0.00 | 1.944 | 12.48 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 1.958 | 9.11 | 1.44 | 4.4 | 95.6 | 0.0 | 0.01 | 2.17 | 0.32 | 0.82 | 1.56 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8X5Y | 38075 | 2024-03-10 | 2023-11-20 | 3.0 | 3.88 | 3.52 | 3.9 | 0.013 | 0.90 | 0.0 | 0.05 | 14.80 | 0.01 | 2.346 | 8.21 | 0.40 | 7.5 | 92.5 | 0.0 | -0.78 | 0.38 | 0.58 | 2.00 | 3.9 | 0.005 | 0.79 | 0.0 | 0.04 | 17.13 | 0.00 | 2.177 | 9.94 | 2.81 | 7.8 | 92.2 | 0.0 | -0.11 | 0.31 | 0.32 | 0.53 | 1.42 | 2292 | 274 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WNZ | 32636 | 2024-03-14 | 2022-01-20 | 3.4 | 3.47 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.05 | 10.39 | 0.00 | 2.177 | 6.80 | 0.00 | 6.3 | 93.7 | 0.0 | -3.33 | 0.51 | 0.70 | 4.51 | 4.0 | 0.003 | 0.64 | 0.0 | 0.05 | 12.56 | 0.00 | 2.003 | 12.51 | 1.49 | 9.5 | 90.5 | 0.0 | -5.72 | 0.52 | 0.32 | 0.67 | 5.53 | 9300 | 650 | 10 | 0 | 0 | 0 | 4780 | logfile |
✔ | 8Q8V | 18262 | 2024-03-11 | 2023-08-18 | 3.8 | 3.56 | 3.64 | 3.9 | 0.012 | 2.00 | 2.0 | 0.09 | 12.46 | 0.01 | 2.510 | 1.71 | 0.00 | 6.4 | 93.6 | 0.0 | -2.75 | 0.30 | 0.69 | 4.41 | 4.0 | 0.004 | 1.27 | 0.0 | 0.05 | 14.36 | 0.01 | 2.145 | 14.66 | 1.01 | 6.6 | 93.4 | 0.0 | -3.14 | 2.97 | 0.32 | 0.78 | 4.93 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 7XMX | 33307 | 2024-03-21 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.012 | 1.30 | 7.0 | 0.09 | 12.65 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 21.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.30 | 0.00 | 2.124 | 10.62 | 2.07 | 5.6 | 94.3 | 0.1 | -0.83 | 1.07 | 0.32 | 0.14 | 0.16 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 8QJJ | 18448 | 2024-03-11 | 2023-09-13 | 3.35 | 3.35 | 3.18 | 3.3 | 0.012 | 1.98 | 0.0 | 0.10 | 12.60 | 0.01 | 2.538 | 0.43 | 0.00 | 2.3 | 97.7 | 0.0 | -2.06 | 0.33 | 0.77 | 5.23 | 3.3 | 0.003 | 0.60 | 0.0 | 0.05 | 15.79 | 0.00 | 2.195 | 6.55 | 2.02 | 4.6 | 95.4 | 0.0 | -1.98 | 2.31 | 0.33 | 0.79 | 4.17 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 6QJM | 4564 | 2024-03-10 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.60 | 0.0 | 0.05 | 13.63 | 0.00 | 2.152 | 6.17 | 2.86 | 7.1 | 92.9 | 0.0 | -2.38 | 1.59 | 0.33 | 0.73 | 3.53 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H9G | 34566 | 2024-03-10 | 2022-10-25 | 2.95 | 3.31 | 3.17 | 3.3 | 0.008 | 0.77 | 0.0 | 0.05 | 14.93 | 0.01 | 2.278 | 10.74 | 0.00 | 5.8 | 94.2 | 0.0 | -2.39 | 0.34 | 0.81 | 2.01 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.78 | 0.00 | 2.159 | 6.56 | 2.82 | 4.4 | 95.6 | 0.0 | 2.46 | 0.90 | 0.33 | 0.81 | 1.93 | 3381 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2024-03-15 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 25.75 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 24.43 | 0.00 | 1.986 | 20.92 | 2.20 | 8.8 | 90.9 | 0.4 | -2.53 | 1.95 | 0.33 | 0.23 | 0.18 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 7ZFW | 14704 | 2024-03-15 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.006 | 0.83 | 0.0 | 0.05 | 26.57 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.1 | 0.009 | 0.93 | 0.0 | 0.05 | 27.81 | 0.01 | 1.930 | 40.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.56 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✔ | 5M3L | 3434 | 2024-03-17 | 2016-10-15 | 3.8 | 2.49 | — | 3.8 | 0.013 | 1.53 | 7.0 | 0.08 | 12.48 | 0.01 | 1.442 | 10.31 | 0.59 | 7.4 | 91.5 | 1.1 | -4.86 | 0.32 | 0.76 | 2.04 | 3.6 | 0.004 | 0.77 | 0.0 | 0.04 | 17.18 | 0.00 | 2.037 | 11.71 | 4.26 | 5.2 | 94.6 | 0.2 | -0.57 | 0.86 | 0.33 | 0.76 | 1.43 | 19007 | 2394 | 27 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U12 | 26275 | 2024-03-10 | 2022-02-19 | 3.5 | 3.59 | — | 4.4 | 0.011 | 1.06 | 0.0 | 0.07 | 16.72 | 0.01 | 2.160 | 20.06 | 5.51 | 8.0 | 92.0 | 0.0 | -3.00 | 0.29 | 0.45 | 2.77 | 4.3 | 0.004 | 0.82 | 0.0 | 0.06 | 15.16 | 0.00 | 2.205 | 11.72 | 3.94 | 9.3 | 90.7 | 0.0 | -3.74 | 2.89 | 0.33 | 0.56 | 2.09 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7RTo | 24685 | 2024-03-11 | 2021-08-13 | 3.8 | 3.83 | — | 3.8 | 0.004 | 0.82 | 0.0 | 0.05 | 14.32 | 0.00 | 2.200 | 8.55 | 0.16 | 5.6 | 94.4 | 0.0 | 1.09 | 0.32 | 0.76 | 2.41 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 16.64 | 0.00 | 2.244 | 7.52 | 2.95 | 4.9 | 95.1 | 0.0 | 1.63 | 0.52 | 0.33 | 0.78 | 1.65 | 6607 | 888 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKH | 14042 | 2024-03-10 | 2021-12-17 | 3.17 | 3.37 | 2.07 | 3.5 | 0.011 | 2.48 | 5.0 | 0.19 | 15.22 | 0.01 | 2.470 | 1.29 | 0.00 | 14.6 | 85.4 | 0.0 | -3.56 | 0.37 | 0.74 | 3.98 | 6.0 | 0.004 | 0.99 | 0.0 | 0.22 | 15.46 | 0.00 | 2.133 | 8.39 | 1.11 | 8.3 | 91.7 | 0.0 | -2.81 | 2.23 | 0.33 | 0.71 | 4.39 | 3105 | 204 | 6 | 0 | 0 | 0 | 1593 | logfile |
✔ | 8Q8Z | 18266 | 2024-03-11 | 2023-08-19 | 3.16 | 3.15 | 3.34 | 3.2 | 0.011 | 1.88 | 0.0 | 0.08 | 10.80 | 0.01 | 2.522 | 0.00 | 0.00 | 4.6 | 95.4 | 0.0 | -2.15 | 0.29 | 0.75 | 6.08 | 3.2 | 0.003 | 0.52 | 0.0 | 0.05 | 13.80 | 0.00 | 2.011 | 4.41 | 0.25 | 1.1 | 98.9 | 0.0 | -1.26 | 2.96 | 0.33 | 0.85 | 5.45 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |