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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7DA4 | 30622 | 2022-12-11 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.95 | 0.0 | 0.04 | 11.56 | 0.00 | 2.266 | 19.19 | 0.00 | 18.3 | 81.7 | 0.0 | -5.96 | 3.11 | 0.36 | 0.58 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MPE | 3535 | 2022-12-21 | 2016-12-16 | 4.5 | 4.55 | — | 4.5 | 0.034 | 3.32 | 297.0 | 0.19 | 17.16 | 0.03 | 1.158 | 3.98 | 2.25 | 5.2 | 92.6 | 2.2 | -1.86 | 0.28 | 0.39 | — | 4.5 | 0.003 | 0.80 | 0.0 | 0.04 | 14.92 | 0.00 | 1.932 | 18.88 | 0.00 | 5.5 | 94.2 | 0.3 | -0.54 | 2.08 | 0.36 | 0.67 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TJo | 10512 | 2022-12-11 | 2019-11-26 | 3.2 | 3.43 | 2.57 | 3.5 | 0.013 | 1.18 | 0.0 | 0.07 | 9.67 | 0.01 | 2.394 | 2.80 | 0.00 | 12.7 | 87.3 | 0.0 | -4.63 | 0.36 | 0.76 | 4.64 | 3.5 | 0.006 | 0.88 | 0.0 | 0.05 | 13.23 | 0.00 | 2.284 | 10.02 | 0.35 | 11.1 | 88.9 | 0.0 | -3.87 | 1.40 | 0.36 | 0.78 | 3.90 | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N5F | 24188 | 2022-12-11 | 2021-06-05 | 2.7 | 2.27 | 2.74 | 2.0 | 0.023 | 1.50 | 0.0 | 0.10 | 9.99 | 0.01 | 2.468 | 0.16 | 0.00 | 1.3 | 98.7 | 0.0 | 1.68 | 0.36 | 0.75 | 3.32 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 17.43 | 0.00 | 2.324 | 7.74 | 0.95 | 1.3 | 98.7 | 0.0 | 2.60 | 0.79 | 0.36 | 0.78 | 3.26 | 3037 | 386 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QJX | 14025 | 2022-12-13 | 2021-12-17 | 2.99 | 3.05 | 3.00 | 2.8 | 0.014 | 2.56 | 5.0 | 0.24 | 13.83 | 0.02 | 2.532 | 0.29 | 0.00 | 1.7 | 98.2 | 0.1 | -2.52 | 0.35 | 0.70 | 3.48 | 2.8 | 0.004 | 1.21 | 0.0 | 0.31 | 16.23 | 0.00 | 2.142 | 3.83 | 1.41 | 5.8 | 94.2 | 0.0 | -3.64 | 2.47 | 0.36 | 0.78 | 3.29 | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✔ | 7QKJ | 14044 | 2022-12-11 | 2021-12-17 | 3.26 | 3.08 | 3.11 | 3.2 | 0.012 | 2.04 | 12.0 | 0.16 | 11.59 | 0.01 | 2.510 | 0.78 | 0.00 | 9.9 | 90.1 | 0.0 | -2.24 | 0.35 | 0.71 | 3.92 | 3.2 | 0.003 | 0.73 | 0.0 | 0.05 | 15.51 | 0.00 | 2.138 | 10.82 | 0.25 | 6.1 | 93.9 | 0.0 | -2.72 | 1.10 | 0.36 | 0.84 | 2.67 | 6888 | 900 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U16 | 26279 | 2022-12-11 | 2022-02-19 | 2.7 | 3.30 | — | 3.5 | 0.003 | 0.55 | 0.0 | 0.05 | 14.72 | 0.00 | 2.310 | 8.58 | 0.00 | 6.8 | 93.2 | 0.0 | -2.67 | 0.29 | 0.68 | 2.62 | 3.5 | 0.004 | 0.57 | 0.0 | 0.06 | 16.80 | 0.00 | 2.186 | 8.14 | 0.79 | 5.8 | 94.2 | 0.0 | -2.64 | 1.73 | 0.36 | 0.80 | 4.99 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7QKG | 14041 | 2022-12-11 | 2021-12-17 | 3.36 | 3.19 | 3.09 | 3.4 | 0.010 | 2.03 | 0.0 | 0.10 | 10.76 | 0.01 | 2.528 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.98 | 0.38 | 0.80 | 4.23 | 3.5 | 0.003 | 0.60 | 0.0 | 0.05 | 13.51 | 0.00 | 2.262 | 5.27 | 0.00 | 2.6 | 97.4 | 0.0 | -1.55 | 1.17 | 0.36 | 0.83 | 4.87 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 7QJY | 14026 | 2022-12-11 | 2021-12-17 | 3.14 | 2.93 | 3.08 | 3.1 | 0.011 | 1.87 | 0.0 | 0.09 | 12.32 | 0.01 | 2.519 | 0.00 | 0.25 | 5.7 | 94.3 | 0.0 | -2.50 | 0.38 | 0.82 | 5.27 | 3.1 | 0.008 | 0.87 | 0.0 | 0.05 | 17.16 | 0.01 | 2.116 | 9.11 | 1.26 | 3.4 | 96.6 | 0.0 | -2.45 | 3.42 | 0.36 | 0.83 | 4.60 | 3444 | 450 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QK5 | 14038 | 2022-12-12 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.67 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 18.34 | 0.01 | 2.238 | 4.68 | 2.74 | 3.7 | 96.3 | 0.0 | -1.87 | 1.49 | 0.36 | 0.82 | 7.41 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |
✔ | 7VZF | 32227 | 2022-12-11 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.83 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.91 | 0.0 | 0.05 | 18.86 | 0.00 | 2.102 | 13.65 | 4.61 | 18.2 | 81.8 | 0.0 | -4.30 | 1.96 | 0.37 | 0.63 | 0.33 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZGA | 11199 | 2022-12-15 | 2020-06-18 | 4.6 | 5.12 | 4.44 | 4.9 | 0.011 | 1.53 | 0.0 | 0.08 | 14.65 | 0.01 | 2.071 | 13.24 | 0.07 | 10.1 | 89.7 | 0.2 | -3.01 | 0.41 | 0.70 | — | 4.9 | 0.006 | 0.86 | 0.0 | 0.05 | 13.86 | 0.01 | 1.950 | 29.55 | 0.00 | 9.3 | 90.5 | 0.2 | -1.88 | 2.01 | 0.37 | 0.70 | — | 26963 | 3413 | 14 | 0 | 8 | 0 | 0 | logfile |
✔ | 7QL1 | 14060 | 2022-12-11 | 2021-12-19 | 3.34 | 3.41 | 3.13 | 3.4 | 0.011 | 2.01 | 0.0 | 0.10 | 11.06 | 0.01 | 2.654 | 1.47 | 0.00 | 7.5 | 92.5 | 0.0 | -3.09 | 0.42 | 0.83 | 4.57 | 3.4 | 0.004 | 0.73 | 0.0 | 0.05 | 15.67 | 0.00 | 2.155 | 10.56 | 0.00 | 3.3 | 96.7 | 0.0 | -2.40 | 1.74 | 0.37 | 0.79 | 4.22 | 1671 | 219 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKV | 14054 | 2022-12-12 | 2021-12-19 | 3.23 | 2.84 | 3.19 | 3.3 | 0.011 | 1.92 | 0.0 | 0.09 | 12.28 | 0.02 | 2.512 | 0.73 | 0.00 | 3.5 | 96.5 | 0.0 | -2.11 | 0.37 | 0.72 | 4.94 | 3.2 | 0.003 | 0.60 | 0.0 | 0.05 | 15.70 | 0.01 | 2.050 | 10.55 | 0.19 | 4.0 | 96.0 | 0.0 | -2.69 | 1.61 | 0.37 | 0.80 | 5.44 | 9585 | 621 | 9 | 0 | 0 | 0 | 4887 | logfile |
✔ | 7QWG | 14187 | 2022-12-11 | 2022-01-25 | 3.38 | 3.26 | 2.98 | 3.3 | 0.012 | 2.34 | 10.0 | 0.15 | 14.89 | 0.01 | 2.525 | 0.77 | 0.26 | 10.0 | 90.0 | 0.0 | -3.26 | 0.41 | 0.82 | 4.16 | 3.3 | 0.005 | 0.78 | 0.0 | 0.05 | 17.03 | 0.00 | 2.189 | 10.29 | 0.79 | 12.8 | 87.2 | 0.0 | -3.71 | 2.40 | 0.37 | 0.84 | 3.82 | 3258 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WHN | 32505 | 2022-12-12 | 2021-12-31 | 3.3 | 2.99 | — | 3.2 | 0.009 | 0.80 | 0.0 | 0.05 | 13.81 | 0.01 | 2.147 | 7.75 | 0.10 | 4.5 | 95.5 | 0.0 | -1.29 | 0.41 | 0.83 | 2.92 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 15.04 | 0.00 | 2.281 | 5.47 | 0.19 | 2.7 | 97.3 | 0.0 | 0.87 | 0.39 | 0.37 | 0.81 | 2.12 | 9284 | 1170 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XiZ | 33213 | 2022-12-11 | 2022-04-14 | 3.74 | 3.27 | 3.81 | 3.1 | 0.013 | 1.10 | 0.0 | 0.06 | 18.15 | 0.01 | 2.386 | 4.94 | 0.00 | 12.8 | 86.4 | 0.8 | -3.37 | 0.35 | 0.71 | 1.78 | 3.1 | 0.004 | 0.82 | 0.0 | 0.05 | 18.16 | 0.01 | 2.215 | 14.34 | 0.43 | 16.6 | 82.6 | 0.8 | -3.64 | 1.53 | 0.37 | 0.73 | 1.52 | 2161 | 267 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5L4K | 4002 | 2022-12-15 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.08 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 17.33 | 0.00 | 1.807 | 15.67 | 0.55 | 8.2 | 91.3 | 0.5 | -1.41 | 1.81 | 0.37 | 0.70 | 0.19 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 7DNH | 30783 | 2022-12-14 | 2020-12-09 | 3.64 | 4.22 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 15.01 | 0.01 | 1.791 | 6.23 | 0.78 | 9.6 | 90.2 | 0.2 | -4.48 | 0.39 | 0.79 | 2.34 | 4.2 | 0.004 | 0.76 | 0.0 | 0.05 | 16.25 | 0.00 | 2.147 | 12.85 | 0.37 | 7.3 | 92.7 | 0.0 | -2.45 | 1.30 | 0.37 | 0.78 | 1.87 | 21788 | 2762 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H0R | 9564 | 2022-12-13 | 2016-10-06 | 3.9 | 3.72 | — | 3.7 | 0.008 | 0.81 | 0.0 | 0.05 | 10.30 | 0.00 | 1.744 | 20.03 | 0.28 | 8.5 | 91.4 | 0.1 | -4.11 | 0.33 | 0.70 | 1.99 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 15.48 | 0.00 | 2.099 | 16.21 | 0.49 | 7.3 | 92.5 | 0.2 | -1.14 | 1.22 | 0.37 | 0.76 | 2.12 | 15037 | 1656 | 4 | 84 | 0 | 0 | 0 | logfile |