Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JCE	6550	2022-04-15	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.64	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.2	0.007	1.06	3.0	0.05	17.20	0.01	1.577	41.30	0.19	11.5	87.2	1.3	-3.17	1.17	0.63	0.30	0.33	154017	6546	59	4798	2	0	0	logfile
✔	6KFK	9974	2022-04-05	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.96	0.0	0.05	12.82	0.00	2.072	21.12	0.00	8.3	90.8	0.9	-1.45	2.85	0.24	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	7EGC	31112	2022-04-05	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	24.29	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.006	0.91	1.0	0.05	16.75	0.01	1.954	17.35	0.48	6.4	93.4	0.2	-0.89	1.24	0.51	0.32	0.53	113129	13879	63	142	18	0	0	logfile
✔	7PC2	13316	2022-04-07	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	8.86	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	2.9	0.014	1.28	3.0	0.05	16.66	0.01	1.526	28.25	2.98	8.1	91.9	0.0	-1.71	1.41	0.57	0.35	0.46	27063	3093	68	0	210	0	0	logfile
✔	7ENC	31207	2022-04-11	2021-04-16	4.13	4.14	—	3.6	0.012	1.43	110.0	0.10	15.86	0.01	1.454	16.92	9.09	3.9	95.2	0.9	1.55	0.57	0.22	—	3.4	0.005	0.71	0.0	0.04	13.93	0.00	2.002	15.45	0.00	4.8	94.9	0.2	0.73	0.89	0.58	0.35	—	171177	21321	88	138	18	0	0	logfile
✔	6C9Y	7438	2022-04-07	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.62	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	4.1	0.004	0.83	0.0	0.05	13.52	0.01	2.106	20.97	0.03	7.0	92.9	0.1	-1.54	2.44	0.61	0.39	—	28920	3685	7	0	3	0	0	logfile
✔	3JCD	6549	2022-04-12	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.007	1.25	0.0	0.06	19.90	0.01	1.449	58.34	0.37	16.4	82.3	1.3	-4.16	2.42	0.69	0.40	0.16	147815	5982	57	4715	0	0	0	logfile
✔	6EU1	3956	2022-04-09	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.52	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.3	0.013	1.36	3.0	0.05	16.40	0.01	1.726	25.28	0.21	17.8	81.9	0.3	-4.08	2.02	0.48	0.41	0.16	40547	5012	24	43	7	0	0	logfile
✔	7NK1	12428	2022-04-07	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.011	1.01	1.0	0.04	14.16	0.01	1.847	23.37	0.00	6.4	93.6	0.0	-1.30	1.60	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	5L3P	4001	2022-04-13	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.42	0.02	2.115	7.18	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	3.9	0.009	1.22	4.0	0.05	18.03	0.01	1.651	53.00	0.21	10.9	88.4	0.7	-2.75	2.46	0.66	0.41	0.07	149606	6419	58	4704	76	0	0	logfile
✔	7APK	11857	2022-04-07	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	3.98	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.84	1.0	0.04	12.90	0.00	1.695	13.78	0.09	5.7	94.1	0.1	1.02	1.04	0.49	0.42	0.88	72697	9893	30	0	74	0	0	logfile
✔	3KTT	5148	2022-04-04	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.9	0.006	1.32	0.0	0.06	17.22	0.01	2.001	37.19	1.22	10.2	88.6	1.2	-2.54	1.70	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	1oED	1044	2022-04-04	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	7JGF	22325	2022-04-04	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7FG3	31577	2022-04-04	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	23.98	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	7LVT	23542	2022-04-06	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.37	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.74	0.0	0.04	12.83	0.00	2.126	11.64	0.00	5.5	94.3	0.1	0.09	16.94	0.56	0.46	—	18944	2876	4	0	0	0	0	logfile
✔	7ENA	31204	2022-04-12	2021-04-16	4.07	3.90	—	3.5	0.011	1.59	361.0	0.11	17.28	0.01	1.497	22.45	10.72	7.9	90.7	1.4	-2.34	0.57	0.29	—	3.3	0.005	0.76	0.0	0.04	14.27	0.00	1.705	15.65	0.01	7.7	92.0	0.3	-0.52	2.05	0.64	0.47	—	173965	21595	88	138	18	0	0	logfile
✔	6H05	0108	2022-04-09	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.007	1.02	0.0	0.05	15.81	0.01	1.535	23.01	2.30	5.2	94.8	0.0	-1.96	1.64	0.58	0.48	0.74	44544	5664	24	0	0	0	0	logfile
✔	7JGJ	22328	2022-04-05	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.15	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.76	0.0	0.04	13.54	0.00	2.130	26.87	0.00	7.7	92.2	0.1	-2.19	1.26	0.84	0.48	—	13324	1707	3	0	0	0	0	logfile
✔	6EU2	3957	2022-04-08	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.04	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.011	1.17	3.0	0.05	15.41	0.01	1.507	18.88	0.26	11.6	88.1	0.3	-2.77	1.48	0.55	0.48	0.07	38329	4825	22	0	7	0	0	logfile

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