Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TQM	10555	2021-04-04	2019-12-16	3.8	4.34	3.78	20.0	0.013	0.92	0.0	0.12	14.97	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.72	0.0	0.04	13.70	0.00	1.948	12.65	0.00	8.2	91.8	0.0	-3.50	1.53	0.38	0.24	0.22	39616	2578	6	0	4	0	19804	logfile
✔	6MN7	9166	2021-04-02	2018-10-01	4.8	5.01	—	5.0	0.016	2.16	12.0	0.12	10.63	0.02	1.395	35.15	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	4.8	0.003	0.72	0.0	0.06	11.38	0.00	2.124	15.27	0.00	8.4	91.4	0.3	-1.37	2.48	0.55	0.25	—	21447	2418	15	0	192	0	0	logfile
✔	6H5i	0140	2021-04-05	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	13.36	0.00	2.074	14.63	0.00	4.3	95.7	0.0	0.62	1.46	0.38	0.26	0.26	43900	5392	26	0	0	0	0	logfile
✔	5LKH	4068	2021-04-04	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.004	0.79	0.0	0.04	13.68	0.00	2.112	26.91	0.02	7.0	92.9	0.0	-1.11	2.56	0.40	0.27	0.20	37345	4740	5	0	0	0	0	logfile
✔	6Q97	4476	2021-04-06	2018-12-17	3.9	3.69	—	20.0	0.011	1.21	0.0	0.16	18.90	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.007	1.27	0.0	0.06	21.64	0.01	1.027	30.46	0.04	14.7	85.3	0.1	-3.84	3.46	0.32	0.27	0.49	156609	6124	72	5051	441	2	0	logfile
✔	6VU3	21386	2021-04-13	2020-02-14	3.7	4.15	—	75.0	0.008	1.23	37.0	0.10	16.64	0.01	1.029	8.05	8.23	7.1	91.8	1.1	-2.95	0.26	0.02	0.12	3.8	0.006	1.10	0.0	0.05	20.18	0.01	1.646	42.33	0.01	12.1	87.8	0.2	-2.54	3.25	0.42	0.29	0.23	300609	9496	67	4755	3	0	124724	logfile
✔	6HDD	0204	2021-04-03	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.06	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.4	0.005	1.11	14.0	0.06	13.60	0.01	1.375	27.60	0.00	17.9	82.1	0.0	-3.06	5.49	0.71	0.29	—	28154	3605	7	0	0	0	0	logfile
✔	5GAK	3227	2021-04-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.006	1.21	0.0	0.06	20.98	0.01	1.828	38.63	0.02	13.2	86.3	0.5	-3.52	2.84	0.36	0.31	0.15	128975	6434	50	3597	234	0	0	logfile
✔	6KFK	9974	2021-04-05	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.87	0.0	0.05	13.11	0.00	2.083	19.62	0.01	9.4	89.6	1.0	-1.60	2.00	0.24	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	6LTJ	0974	2021-04-04	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	13.82	2.63	6.4	93.3	0.3	-3.67	0.46	0.09	0.04	3.6	0.005	0.88	0.0	0.05	20.40	0.01	1.954	28.36	0.03	6.0	94.0	0.0	-1.03	1.79	0.61	0.33	0.38	34283	3656	21	238	1	0	0	logfile
✔	7C4Z	30292	2021-04-12	2020-05-18	3.3	3.45	—	7.4	0.003	0.64	0.0	0.05	14.43	0.01	0.423	33.42	5.47	5.3	94.5	0.2	-3.78	0.17	0.06	0.12	3.5	0.003	0.72	0.0	0.04	12.60	0.01	2.012	12.96	0.02	4.7	95.1	0.2	-1.76	3.30	0.39	0.36	0.60	300000	38220	180	0	0	0	0	logfile
✔	3KTT	5148	2021-04-01	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	176.10	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.003	0.93	0.0	0.05	14.48	0.00	2.145	21.34	0.00	9.8	89.2	1.0	-2.04	1.94	0.30	0.40	—	3855	513	1	0	0	0	0	logfile
✔	6CFZ	7469	2021-04-06	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.007	0.81	0.0	0.04	11.85	0.01	1.616	25.76	0.00	10.5	89.4	0.2	2.76	1.89	0.32	0.40	—	204102	12937	170	0	0	0	102272	logfile
✔	1oED	1044	2021-04-01	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	221.91	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	8.9	0.003	0.86	0.0	0.04	11.48	0.01	2.194	16.72	0.00	1.9	98.1	0.0	2.24	3.88	0.64	0.43	—	4926	636	5	0	0	0	0	logfile
✔	7APK	11857	2021-04-01	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	3.99	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	3.0	0.005	0.76	0.0	0.04	11.82	0.00	2.074	13.24	0.03	6.8	93.1	0.1	0.74	1.68	0.50	0.45	1.12	72697	9893	30	0	74	0	0	logfile
✔	7JGF	22325	2021-04-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.46	0.00	2.074	52.91	0.41	6.3	93.7	0.0	0.95	0.80	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	6P7N	20267	2021-04-04	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.63	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	4.8	0.002	0.57	0.0	0.04	13.55	0.00	2.044	10.45	0.00	3.2	96.8	0.0	0.60	2.93	0.76	0.46	—	20356	2352	10	52	4	0	0	logfile
✔	6YRG	10889	2021-04-02	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.13	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.83	0.0	0.05	13.06	0.00	2.169	16.44	0.00	9.2	90.6	0.1	-1.26	3.45	0.72	0.47	—	21992	2736	4	0	0	0	0	logfile
✔	7C4Y	30291	2021-04-12	2020-05-18	3.5	3.66	—	7.2	0.003	0.65	0.0	0.05	14.43	0.01	0.358	41.16	5.11	6.4	93.4	0.2	-4.56	0.24	0.06	0.06	3.6	0.003	0.72	0.0	0.05	12.71	0.01	2.070	13.69	0.02	5.9	93.9	0.2	-2.17	2.55	0.53	0.47	0.70	299880	38340	180	0	0	0	0	logfile
✔	3JCE	6550	2021-04-05	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.0	0.007	1.33	4.0	0.06	20.37	0.01	1.371	58.03	0.00	15.5	83.2	1.2	-3.74	2.35	0.73	0.48	0.16	154017	6546	59	4797	3	0	0	logfile

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