Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LKH	4068	2021-09-06	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.004	0.82	0.0	0.04	15.63	0.01	2.059	26.51	0.27	6.4	93.5	0.0	-0.75	2.44	0.40	0.25	0.18	37345	4740	5	0	0	0	0	logfile
✔	6Q97	4476	2021-09-12	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	0.96	2.0	0.05	20.64	0.01	1.041	22.12	0.12	9.7	90.3	0.0	-3.62	2.64	0.31	0.25	0.31	156609	6124	72	5051	441	2	0	logfile
✔	6TQM	10555	2021-09-06	2019-12-16	3.8	4.34	3.78	20.0	0.013	0.94	0.0	0.12	15.07	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.016	1.39	2.0	0.04	16.32	0.01	1.844	20.14	0.29	12.8	87.2	0.0	-4.02	1.42	0.39	0.26	0.56	39616	2578	6	0	4	0	19804	logfile
✔	7ENC	31207	2021-09-03	2021-04-16	4.13	4.14	—	3.6	0.012	1.43	110.0	0.10	15.86	0.01	1.454	16.71	9.09	3.9	95.2	0.9	1.55	0.57	0.22	—	3.5	0.006	0.75	0.0	0.04	13.93	0.00	1.880	17.15	0.01	5.2	94.6	0.2	0.63	2.19	0.59	0.27	—	171177	21321	88	138	18	0	0	logfile
✔	6LTJ	0974	2021-09-05	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	13.82	2.63	6.4	93.3	0.3	-3.67	0.46	0.09	0.04	9.2	0.011	1.05	2.0	0.04	22.30	0.01	1.531	27.04	0.22	4.3	95.7	0.0	-0.12	1.62	0.59	0.28	0.35	34283	3656	21	238	1	0	0	logfile
✔	6KFK	9974	2021-09-03	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.88	0.0	0.05	12.92	0.00	2.087	19.28	0.01	9.0	90.1	0.9	-1.32	2.37	0.24	0.30	—	65076	8844	22	0	0	0	0	logfile
✔	6HDD	0204	2021-09-05	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.06	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.10	7.0	0.06	13.62	0.01	1.459	25.88	0.00	15.9	83.8	0.2	-3.42	5.57	0.72	0.30	—	28154	3605	7	0	0	0	0	logfile
✔	7EGC	31112	2021-09-03	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	23.95	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.008	0.95	2.0	0.05	16.66	0.01	1.534	20.15	0.15	6.3	93.5	0.2	-0.83	1.36	0.53	0.34	0.50	113129	13879	63	142	18	0	0	logfile
✔	3JCE	6550	2021-09-12	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.1	0.008	1.08	1.0	0.05	18.29	0.01	1.688	45.38	0.30	11.8	87.0	1.1	-3.25	1.56	0.67	0.36	0.15	154017	6546	59	4797	3	0	0	logfile
✔	6KN8	0729	2021-09-03	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	8.87	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	8.4	0.076	4.53	940.0	0.26	14.49	0.02	1.047	220.72	0.24	9.1	83.4	7.5	-2.34	10.77	0.69	0.37	—	60966	7669	44	0	15	0	0	logfile
✔	3JAU	6366	2021-09-03	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.70	0.0	0.05	13.33	0.00	2.162	13.61	0.37	4.7	94.9	0.4	-0.77	1.46	0.21	0.38	—	114900	14700	180	0	0	0	0	logfile
✔	6CFZ	7469	2021-09-07	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.010	1.01	13.0	0.05	12.04	0.01	1.548	36.39	0.00	12.0	87.6	0.4	2.64	1.90	0.33	0.42	—	204102	12937	170	0	0	0	102272	logfile
✔	3KTT	5148	2021-09-02	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	176.10	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.007	1.18	0.0	0.05	17.26	0.01	2.046	27.09	0.49	10.8	88.3	1.0	-2.28	1.90	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	7APK	11857	2021-09-05	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	3.99	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.009	0.88	0.0	0.04	13.05	0.00	1.717	13.53	0.07	5.9	94.0	0.1	1.19	1.17	0.49	0.44	0.94	72697	9893	30	0	74	0	0	logfile
✔	1oED	1044	2021-09-02	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	221.91	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.39	0.01	2.271	19.76	0.35	1.5	98.5	0.0	2.27	4.39	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	7BHQ	12190	2021-09-03	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.33	0.00	3.0	97.0	0.0	1.03	0.20	0.47	0.97	2.8	0.020	1.52	1.0	0.04	16.41	0.00	2.039	15.28	0.00	2.9	97.1	0.0	1.07	0.85	0.20	0.46	1.42	7402	1010	5	0	0	0	0	logfile
✔	6YRG	10889	2021-09-04	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.13	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.011	1.28	4.0	0.04	13.36	0.00	2.135	15.85	0.00	8.8	91.1	0.1	-1.02	3.39	0.73	0.46	—	21992	2736	4	0	0	0	0	logfile
✔	7ENA	31204	2021-09-04	2021-04-16	4.07	3.90	—	3.5	0.011	1.59	361.0	0.11	17.28	0.01	1.497	21.87	10.72	7.9	90.7	1.4	-2.34	0.57	0.29	—	3.3	0.004	0.73	0.0	0.04	14.25	0.00	1.757	14.95	0.02	7.1	92.6	0.3	-0.39	2.08	0.64	0.47	—	173965	21595	88	138	18	0	0	logfile
✔	7JGF	22325	2021-09-02	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.38	0.00	2.139	56.08	0.41	6.7	93.3	0.0	1.10	0.86	0.42	0.47	—	4477	532	1	0	0	0	30	logfile
✔	6VHA	21201	2021-09-02	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	25.04	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.80	0.0	0.05	13.30	0.00	2.320	14.82	0.00	11.1	88.9	0.0	-4.20	3.45	0.45	0.48	—	2439	321	3	0	0	0	0	logfile

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