Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D43	27173	2022-12-11	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.83	1.0	0.06	18.40	0.01	1.371	8.69	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.005	0.95	0.0	0.05	18.69	0.01	2.034	23.70	2.86	9.6	90.3	0.1	-1.97	2.70	0.43	0.38	1.05	7763	962	5	0	6	1	0	logfile
✔	7URi	26713	2022-12-11	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	23.80	0.01	2.074	24.37	0.00	0.0	0.0	0.0	—	1.69	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7PC2	13316	2022-12-15	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	3.1	0.011	0.95	0.0	0.05	16.36	0.01	2.036	16.86	2.94	6.3	93.7	0.0	-1.20	1.45	0.59	0.38	0.38	27063	3093	68	0	210	0	0	logfile
✔	3KTT	5148	2022-12-11	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	7TTS	26122	2022-12-14	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.67	0.01	1.788	5.67	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.004	0.64	0.0	0.04	13.61	0.00	1.810	24.11	0.36	3.6	96.3	0.1	2.08	1.02	0.70	0.41	-0.20	18793	2686	12	0	23	0	0	logfile
✔	7NK1	12428	2022-12-16	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.003	0.68	0.0	0.04	14.21	0.01	1.876	21.64	0.00	5.9	94.1	0.0	-1.46	1.21	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	7APK	11857	2022-12-14	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.14	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.005	0.75	0.0	0.04	12.98	0.00	2.104	13.12	0.18	6.2	93.7	0.1	1.08	1.15	0.50	0.44	1.00	72697	9893	30	0	74	0	0	logfile
✔	7Woo	32653	2022-12-13	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.20	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.80	0.0	0.04	16.41	0.00	2.026	14.26	0.37	7.9	91.8	0.3	-0.29	1.64	0.47	0.44	0.12	66949	8644	12	0	0	0	0	logfile
✔	1oED	1044	2022-12-11	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	225.04	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	7LVT	23542	2022-12-14	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.46	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.69	0.0	0.04	13.28	0.00	2.012	11.37	0.00	4.5	95.3	0.1	0.38	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7FG3	31577	2022-12-12	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.91	0.0	0.05	16.70	0.01	2.098	25.10	0.40	15.9	83.5	0.5	-3.58	0.78	0.23	0.45	-0.23	9054	1166	2	0	0	0	0	logfile
✔	8E4C	27888	2022-12-11	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.83	2.0	0.07	16.39	0.01	2.251	7.72	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.003	0.71	0.0	0.04	17.00	0.01	2.202	14.74	0.42	5.7	94.3	0.0	-0.13	1.26	0.47	0.46	—	6398	805	6	0	5	0	0	logfile
✔	7MDW	23782	2022-12-11	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.37	0.00	2.292	11.94	0.28	7.7	92.3	0.0	-2.34	0.98	0.54	0.46	1.66	3392	435	4	0	1	0	0	logfile
✔	7JGF	22325	2022-12-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.54	0.0	0.04	13.15	0.00	2.122	55.35	0.41	7.3	92.7	0.0	0.66	0.66	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile
✔	7K8D	22728	2022-12-12	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.19	0.01	2.092	15.06	0.00	5.3	94.7	0.0	0.77	1.43	0.41	0.48	—	5529	725	1	0	0	0	0	logfile
✔	6HDD	0204	2022-12-16	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.01	0.0	0.05	13.22	0.01	1.497	26.00	0.00	17.4	82.2	0.4	-3.46	5.55	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✔	7AST	11904	2022-12-19	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.75	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.5	0.016	0.97	0.0	0.05	17.45	0.01	2.108	26.40	0.37	16.4	83.3	0.3	-3.59	1.41	0.64	0.49	—	34518	4365	17	0	36	0	0	logfile
✔	7JGJ	22328	2022-12-13	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.76	0.0	0.04	13.59	0.00	2.150	24.66	0.07	7.7	92.3	0.1	-1.86	1.25	0.84	0.49	—	13324	1707	3	0	0	0	0	logfile
✔	7RSi	24672	2022-12-12	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	6.36	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.002	0.56	0.0	0.04	12.88	0.00	1.878	13.91	0.00	5.6	94.4	0.0	-0.11	1.20	0.78	0.50	—	10886	686	2	0	2	0	5400	logfile

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