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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6H5i | 0140 | 2023-11-13 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2023-11-14 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.70 | 0.0 | 0.04 | 13.78 | 0.00 | 2.196 | 14.60 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 8.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.37 | 0.00 | 2.199 | 14.66 | 0.44 | 5.7 | 94.3 | 0.0 | -0.83 | 1.94 | 0.31 | 0.25 | 0.54 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2023-11-18 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 4.0 | 0.003 | 0.83 | 0.0 | 0.04 | 19.62 | 0.01 | 1.977 | 24.30 | 0.53 | 9.4 | 90.1 | 0.4 | -2.72 | 1.99 | 0.33 | 0.25 | 0.07 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 8GWE | 34310 | 2023-11-18 | 2022-09-16 | 2.66 | 3.19 | 2.77 | 16.0 | 0.009 | 0.97 | 5.0 | 0.06 | 17.61 | 0.01 | 1.065 | 13.66 | 5.00 | 8.4 | 91.2 | 0.3 | -1.93 | 0.39 | 0.09 | 0.45 | 9.7 | 0.003 | 0.82 | 0.0 | 0.04 | 17.99 | 0.00 | 1.934 | 19.68 | 4.48 | 9.5 | 90.4 | 0.2 | -2.52 | 1.56 | 0.46 | 0.26 | 0.17 | 22040 | 2668 | 15 | 56 | 10 | 1 | 0 | logfile |
✔ | 6KFK | 9974 | 2023-11-15 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.05 | 12.77 | 0.00 | 2.091 | 18.31 | 0.01 | 7.4 | 91.8 | 0.9 | -0.89 | 2.83 | 0.23 | 0.28 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LTJ | 0974 | 2023-11-21 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.08 | 0.01 | 2.173 | 14.05 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 22.38 | 0.01 | 1.977 | 27.31 | 0.56 | 5.6 | 94.4 | 0.0 | -0.80 | 1.62 | 0.60 | 0.30 | 0.49 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-11-14 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2023-11-14 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.43 | 0.01 | 1.402 | 24.31 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.008 | 0.96 | 3.0 | 0.05 | 16.79 | 0.01 | 1.880 | 20.83 | 0.49 | 7.3 | 92.4 | 0.3 | -0.99 | 1.29 | 0.53 | 0.34 | 0.60 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 8D43 | 27173 | 2023-11-14 | 2022-06-01 | 2.88 | 3.12 | 2.94 | 5.9 | 0.004 | 0.84 | 1.0 | 0.06 | 18.27 | 0.01 | 1.371 | 8.43 | 5.48 | 6.5 | 93.5 | 0.0 | -1.48 | 0.17 | -0.02 | 0.37 | 3.2 | 0.004 | 0.84 | 0.0 | 0.05 | 18.51 | 0.01 | 2.058 | 18.77 | 3.10 | 5.2 | 94.7 | 0.1 | -1.45 | 2.71 | 0.41 | 0.35 | 0.56 | 7763 | 962 | 5 | 0 | 6 | 1 | 0 | logfile |
✔ | 6C9Y | 7438 | 2023-11-20 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.62 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 13.56 | 0.01 | 2.096 | 20.48 | 0.06 | 6.8 | 93.1 | 0.1 | -1.47 | 2.40 | 0.61 | 0.38 | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7URi | 26713 | 2023-11-13 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 25.77 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.008 | 1.44 | 0.0 | 0.07 | 24.06 | 0.01 | 2.073 | 23.33 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.06 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 8DFo | 27409 | 2023-11-18 | 2022-06-22 | 3.1 | 3.40 | 3.29 | 7.2 | 0.022 | 1.64 | 93.0 | 0.16 | 17.81 | 0.01 | 1.724 | 6.88 | 0.57 | 4.8 | 95.2 | 0.0 | -0.44 | 0.27 | 0.07 | 0.22 | 3.4 | 0.003 | 0.75 | 0.0 | 0.04 | 17.28 | 0.01 | 2.086 | 17.82 | 0.12 | 4.2 | 95.8 | 0.0 | -0.71 | 1.86 | 0.44 | 0.39 | 0.56 | 23861 | 2912 | 13 | 45 | 0 | 0 | 0 | logfile |
✔ | 7NK1 | 12428 | 2023-11-20 | 2021-02-17 | 4.22 | 4.30 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.56 | 0.01 | 1.907 | 9.03 | 0.19 | 4.3 | 95.7 | 0.0 | -0.71 | 0.46 | 0.19 | — | 4.4 | 0.004 | 0.70 | 0.0 | 0.04 | 14.15 | 0.01 | 1.865 | 23.13 | 0.00 | 6.8 | 93.2 | 0.0 | -1.38 | 1.62 | 0.62 | 0.41 | — | 28747 | 1791 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 3KTT | 5148 | 2023-11-13 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.6 | 0.005 | 1.21 | 0.0 | 0.05 | 17.07 | 0.01 | 2.016 | 34.63 | 0.49 | 11.5 | 87.3 | 1.2 | -2.51 | 2.08 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Woo | 32653 | 2023-11-16 | 2022-01-22 | 3.71 | 4.08 | — | 3.9 | 0.010 | 1.69 | 139.0 | 0.10 | 15.86 | 0.01 | 1.041 | 23.12 | 4.33 | 9.3 | 88.5 | 2.2 | -3.11 | 0.47 | 0.44 | 0.31 | 3.9 | 0.003 | 0.81 | 0.0 | 0.04 | 16.42 | 0.00 | 2.097 | 15.49 | 0.35 | 8.6 | 91.1 | 0.3 | -0.38 | 1.64 | 0.47 | 0.44 | 0.13 | 66949 | 8644 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7APK | 11857 | 2023-11-18 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 4.07 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 2.9 | 0.007 | 0.80 | 0.0 | 0.04 | 13.05 | 0.00 | 2.079 | 13.91 | 0.12 | 6.6 | 93.3 | 0.1 | 0.97 | 1.14 | 0.50 | 0.44 | 0.92 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-11-14 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGF | 22325 | 2023-11-13 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.74 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.8 | 0.002 | 0.47 | 0.0 | 0.04 | 13.18 | 0.00 | 2.190 | 46.28 | 0.41 | 4.8 | 95.2 | 0.0 | 1.10 | 0.62 | 0.41 | 0.45 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 8F7J | 28905 | 2023-11-13 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 13.92 | 0.01 | 2.122 | 24.96 | 0.00 | 9.4 | 90.6 | 0.0 | -3.21 | 2.94 | 0.44 | 0.45 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CTG | 26989 | 2023-11-13 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.91 | 0.0 | 0.04 | 7.56 | 0.00 | 2.231 | 7.59 | 1.15 | 15.0 | 84.8 | 0.2 | -3.09 | 2.07 | 0.60 | 0.45 | 1.92 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |