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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Q97 | 4476 | 2024-03-03 | 2018-12-17 | 3.9 | 3.69 | — | 20.0 | 0.011 | 1.20 | 0.0 | 0.16 | 24.87 | 0.02 | 1.320 | 6.99 | 0.38 | 10.1 | 89.8 | 0.1 | -5.34 | 0.15 | 0.01 | 0.22 | 3.6 | 0.005 | 0.92 | 1.0 | 0.05 | 25.72 | 0.01 | 0.951 | 21.35 | 3.55 | 10.5 | 89.5 | 0.0 | -3.27 | 2.51 | 0.27 | 0.22 | 0.31 | 156609 | 6124 | 72 | 5051 | 441 | 2 | 0 | logfile |
✔ | 5GAK | 3227 | 2024-03-15 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 25.75 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 24.43 | 0.00 | 1.986 | 20.92 | 2.20 | 8.8 | 90.9 | 0.4 | -2.53 | 1.95 | 0.33 | 0.23 | 0.18 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2024-03-14 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 14.73 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.8 | 0.005 | 0.94 | 1.0 | 0.05 | 13.34 | 0.01 | 2.007 | 21.22 | 1.97 | 6.6 | 93.2 | 0.2 | -1.51 | 1.68 | 0.34 | 0.23 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6TQM | 10555 | 2024-03-24 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 16.14 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.19 | 0.00 | 1.885 | 14.29 | 1.93 | 9.1 | 90.9 | 0.0 | -3.43 | 1.27 | 0.38 | 0.24 | 0.36 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 8HiA | 34813 | 2024-03-11 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.4 | 0.009 | 0.98 | 0.0 | 0.05 | 15.73 | 0.01 | 2.082 | 32.36 | 4.76 | 19.0 | 81.0 | 0.0 | -5.53 | 12.59 | 0.68 | 0.24 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 8UoP | 42435 | 2024-03-15 | 2023-10-20 | 3.8 | 3.97 | 3.89 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 16.45 | 0.01 | 1.954 | 17.97 | 0.73 | 15.7 | 83.6 | 0.7 | -3.60 | 0.18 | 0.15 | 0.40 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.20 | 0.00 | 1.949 | 14.94 | 4.40 | 11.8 | 87.9 | 0.3 | -3.15 | 0.92 | 0.24 | 0.24 | 0.27 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 8UoY | 42441 | 2024-03-15 | 2023-10-20 | 3.4 | 3.52 | 3.51 | 3.4 | 0.016 | 2.25 | 10.0 | 0.11 | 17.12 | 0.02 | 2.532 | 0.83 | 6.89 | 12.1 | 85.3 | 2.6 | -3.89 | 0.21 | 0.24 | 0.07 | 3.4 | 0.003 | 0.74 | 0.0 | 0.04 | 17.69 | 0.00 | 1.889 | 17.22 | 4.99 | 9.2 | 90.7 | 0.1 | -3.33 | 0.86 | 0.22 | 0.25 | 0.30 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 8GWE | 34310 | 2024-03-18 | 2022-09-16 | 2.66 | 3.19 | 2.77 | 16.0 | 0.009 | 0.97 | 5.0 | 0.06 | 18.80 | 0.01 | 1.065 | 13.66 | 5.00 | 8.4 | 91.2 | 0.3 | -1.93 | 0.39 | 0.09 | 0.45 | 10.1 | 0.004 | 0.93 | 1.0 | 0.05 | 18.70 | 0.00 | 1.793 | 18.44 | 4.61 | 9.2 | 90.6 | 0.2 | -2.22 | 1.48 | 0.46 | 0.25 | 0.13 | 22040 | 2668 | 15 | 56 | 10 | 1 | 0 | logfile |
✔ | 6H5i | 0140 | 2024-03-10 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.27 | 0.00 | 2.073 | 14.15 | 1.77 | 3.2 | 96.8 | 0.0 | 1.17 | 1.26 | 0.37 | 0.25 | 0.10 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2024-03-11 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.70 | 0.0 | 0.04 | 13.78 | 0.00 | 2.196 | 14.60 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 8.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.30 | 0.00 | 2.211 | 13.58 | 2.11 | 5.7 | 94.3 | 0.0 | -0.69 | 1.89 | 0.31 | 0.25 | 0.29 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8iEN | 35387 | 2024-03-11 | 2023-02-15 | 3.25 | 3.66 | 3.30 | 7.2 | 0.004 | 1.21 | 0.0 | 0.04 | 14.04 | 0.00 | 2.168 | 8.43 | 0.24 | 5.0 | 94.9 | 0.1 | -2.18 | 0.18 | 0.00 | -0.05 | 3.5 | 0.003 | 1.04 | 0.0 | 0.04 | 16.13 | 0.01 | 2.094 | 16.86 | 1.18 | 8.4 | 91.6 | 0.0 | -1.45 | 1.69 | 0.35 | 0.28 | 0.69 | 7678 | 991 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LTJ | 0974 | 2024-03-22 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.18 | 0.01 | 2.173 | 14.05 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 3.6 | 0.004 | 0.82 | 0.0 | 0.04 | 22.35 | 0.01 | 1.996 | 24.67 | 2.10 | 4.8 | 95.2 | 0.0 | -0.58 | 1.60 | 0.60 | 0.29 | 0.45 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2024-03-11 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.52 | 0.01 | 1.402 | 24.31 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.003 | 0.75 | 0.0 | 0.04 | 16.64 | 0.00 | 2.033 | 14.85 | 1.87 | 5.6 | 94.2 | 0.2 | -0.50 | 1.16 | 0.50 | 0.30 | 0.41 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2024-03-11 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2024-03-12 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.91 | 0.0 | 0.05 | 12.96 | 0.00 | 2.067 | 21.77 | 0.00 | 7.8 | 91.3 | 0.9 | -1.51 | 2.73 | 0.24 | 0.31 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2024-03-15 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.64 | 0.0 | 0.04 | 14.47 | 0.00 | 2.075 | 23.67 | 1.42 | 4.1 | 95.9 | 0.0 | 0.67 | 4.63 | 0.58 | 0.33 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G9R | 29874 | 2024-03-10 | 2023-02-21 | 3.28 | 3.68 | 2.90 | 44.0 | 0.003 | 0.59 | 0.0 | 0.05 | 16.84 | 0.01 | 2.542 | 2.24 | 0.00 | 5.7 | 94.3 | 0.0 | -3.38 | 0.13 | 0.07 | 1.03 | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 16.59 | 0.01 | 2.246 | 16.24 | 3.08 | 10.6 | 89.4 | 0.0 | -3.56 | 2.52 | 0.26 | 0.35 | 1.90 | 3570 | 455 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2024-03-20 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.66 | 5.0 | 0.06 | 19.87 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 2.8 | 0.004 | 0.92 | 0.0 | 0.05 | 15.28 | 0.00 | 2.070 | 15.63 | 2.61 | 6.8 | 93.2 | 0.0 | -1.15 | 1.37 | 0.58 | 0.35 | 0.25 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 6C9Y | 7438 | 2024-03-21 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.62 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 13.51 | 0.00 | 2.046 | 16.24 | 0.00 | 6.1 | 93.8 | 0.1 | -1.28 | 2.39 | 0.60 | 0.36 | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8D43 | 27173 | 2024-03-11 | 2022-06-01 | 2.88 | 3.12 | 2.94 | 5.9 | 0.004 | 0.84 | 1.0 | 0.06 | 19.69 | 0.01 | 1.371 | 8.43 | 5.48 | 6.5 | 93.5 | 0.0 | -1.48 | 0.17 | -0.02 | 0.37 | 3.1 | 0.005 | 0.96 | 0.0 | 0.05 | 18.05 | 0.01 | 2.138 | 24.30 | 3.34 | 9.0 | 90.8 | 0.2 | -1.78 | 2.71 | 0.42 | 0.37 | 0.91 | 7763 | 962 | 5 | 0 | 6 | 1 | 0 | logfile |