Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CU8	7619	2022-11-29	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	7E39	30977	2022-11-29	2021-02-08	3.7	3.11	—	2.9	0.005	0.76	0.0	0.05	14.34	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.65	0.0	0.05	15.89	0.00	2.161	11.51	0.00	6.2	93.8	0.0	-2.43	0.42	0.50	0.74	2.23	3074	414	4	0	1	0	0	logfile
✔	7F73	31484	2022-11-29	2021-06-27	4.0	4.29	3.95	4.3	0.007	1.07	0.0	0.06	15.26	0.00	2.247	11.96	4.10	3.1	96.9	0.0	0.17	0.57	0.70	—	4.3	0.008	1.01	1.0	0.05	17.43	0.01	2.193	17.23	0.56	3.6	96.4	0.0	1.13	3.62	0.60	0.74	—	4934	586	2	0	0	0	0	logfile
✔	7UN5	26613	2022-11-29	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	12.34	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.75	0.0	0.05	15.16	0.00	2.232	12.34	0.77	10.3	89.7	0.0	-3.94	0.50	0.35	0.74	4.69	4380	620	10	0	0	0	0	logfile
✔	6QJM	4564	2022-11-29	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.34	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	7SK1	25169	2022-11-29	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.003	0.63	0.0	0.04	15.96	0.01	2.301	7.30	0.43	4.2	95.8	0.0	0.11	0.58	0.59	0.74	0.71	4291	524	4	0	7	0	0	logfile
✔	8DAD	27270	2022-11-29	2022-06-13	3.85	4.05	3.91	4.0	0.004	0.81	1.0	0.05	16.30	0.01	2.238	16.32	0.63	5.0	95.0	0.0	-0.96	0.65	0.73	1.59	4.0	0.003	0.74	0.0	0.05	16.55	0.01	2.233	13.12	1.27	5.0	95.0	0.0	-0.92	0.46	0.65	0.74	1.80	3255	424	5	0	4	0	0	logfile
✔	7PDD	13334	2022-11-29	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	21.59	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.76	0.0	0.04	13.98	0.00	2.150	21.36	0.00	5.3	94.7	0.0	-1.30	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7WS6	32748	2022-11-29	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.79	0.0	0.05	16.23	0.00	2.255	14.86	0.00	4.9	95.1	0.0	-1.37	0.66	0.67	0.74	2.34	3531	451	3	0	0	0	0	logfile
✔	7QJZ	14027	2022-11-29	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.58	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.5	0.003	0.71	0.0	0.05	14.98	0.00	2.231	6.83	0.26	4.2	95.8	0.0	-2.74	3.99	0.35	0.74	4.05	3378	444	6	0	0	0	0	logfile
✔	7P2Q	13172	2022-11-29	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.28	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.53	0.00	2.212	14.61	0.00	4.7	95.3	0.0	-0.39	1.80	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7WP5	32669	2022-11-29	2022-01-22	3.9	4.08	—	4.0	0.005	1.02	0.0	0.06	14.06	0.01	2.278	4.75	0.56	9.1	90.7	0.2	-4.27	0.59	0.74	2.00	4.0	0.003	0.76	0.0	0.05	16.66	0.00	2.172	12.26	0.28	9.8	90.0	0.2	-2.82	0.64	0.59	0.74	1.45	3340	425	4	0	2	0	0	logfile
✔	7M64	23688	2022-11-29	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	6Y5L	10701	2022-11-29	2020-02-25	3.6	3.66	2.91	3.6	0.003	0.69	0.0	0.05	14.52	0.01	2.161	6.30	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.04	0.0	0.05	18.54	0.01	2.257	20.21	0.00	3.9	96.1	0.0	-0.04	1.09	0.69	0.74	0.99	3855	477	9	0	3	0	0	logfile
✔	7XH8	33191	2022-11-29	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.87	0.0	0.04	15.24	0.01	2.176	19.59	3.22	6.5	93.5	0.0	-0.91	2.01	0.67	0.74	1.72	3161	404	3	0	0	0	0	logfile
✔	7X34	32978	2022-11-29	2022-02-27	3.1	5.47	3.72	3.1	0.009	1.17	0.0	0.05	18.59	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.2	0.004	0.76	0.0	0.04	19.73	0.00	2.145	31.83	0.00	5.1	94.9	0.0	0.07	0.60	0.21	0.75	1.18	2762	100	2	94	0	0	0	logfile
✔	7THE	25893	2022-11-29	2022-01-10	3.79	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.70	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.004	0.78	0.0	0.05	15.65	0.00	2.180	17.59	1.39	7.7	92.3	0.0	-1.24	0.72	0.68	0.75	2.45	3305	423	4	0	1	0	0	logfile
✔	7FiL	31602	2022-11-29	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	3.5	0.003	0.79	0.0	0.04	18.76	0.00	2.217	10.49	5.53	6.7	93.1	0.2	1.46	1.56	0.71	0.75	0.59	3993	504	1	0	0	0	0	logfile
✔	6F1Z	4172	2022-11-29	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	7RU8	24699	2022-11-29	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.86	0.0	0.11	10.41	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.003	0.76	0.0	0.05	14.52	0.00	2.121	13.71	0.00	8.6	91.4	0.0	-1.53	1.49	0.78	0.75	1.01	3198	405	5	0	3	0	0	logfile

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