Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WGC	32483	2023-08-10	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.002	0.61	0.0	0.04	16.25	0.00	2.170	10.73	0.43	4.2	95.8	0.0	0.33	0.37	0.56	0.54	0.98	6527	795	4	0	5	0	0	logfile
✔	6B3R	7042	2023-08-23	2017-09-22	3.8	3.79	—	3.8	0.006	1.04	0.0	0.06	10.17	0.01	2.247	4.85	0.25	8.1	91.9	0.0	-4.41	0.35	0.53	1.24	3.8	0.003	0.75	0.0	0.04	15.50	0.00	2.107	12.12	0.28	6.7	93.3	0.0	-0.06	1.03	0.40	0.55	1.40	35718	4506	6	0	48	0	0	logfile
✔	7EGA	31110	2023-08-21	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.65	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.005	0.75	0.0	0.04	15.60	0.00	1.890	17.26	0.01	6.0	93.9	0.1	-0.67	1.39	0.75	0.55	—	85697	10273	49	170	11	0	0	logfile
✔	7WoG	32651	2023-08-09	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	6R91	4765	2023-08-25	2019-04-02	4.1	5.15	—	5.0	0.006	1.01	0.0	0.05	23.74	0.01	2.021	3.55	0.65	4.6	95.0	0.5	-0.83	0.64	0.52	—	5.0	0.003	0.67	0.0	0.04	23.98	0.00	1.835	13.74	0.00	5.5	94.4	0.1	-1.38	1.01	0.66	0.55	—	40540	1969	12	290	0	0	19063	logfile
✔	7K8A	22724	2023-08-12	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	7YEG	33772	2023-08-10	2022-07-05	3.73	3.29	3.71	3.5	0.002	0.48	0.0	0.04	13.17	0.00	2.191	5.16	0.37	3.1	96.8	0.0	-4.62	0.61	0.57	0.60	3.5	0.003	0.69	0.0	0.04	15.76	0.00	2.056	11.23	0.26	5.0	95.0	0.0	-1.54	3.07	0.58	0.55	1.13	49974	6306	24	0	51	0	0	logfile
✔	3iZK	5247	2023-08-11	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.81	0.00	2.233	21.48	0.00	2.7	97.3	0.0	-0.42	1.96	0.75	0.55	—	58448	7856	16	0	0	0	0	logfile
✔	7NVR	12610	2023-08-23	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.62	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	3.5	0.004	0.65	0.0	0.04	15.28	0.00	1.966	14.80	0.01	4.5	95.5	0.0	0.50	1.67	0.74	0.55	—	96126	11548	71	128	157	0	0	logfile
✔	7WZ3	32903	2023-08-11	2022-02-16	4.1	3.52	—	3.4	0.003	0.58	0.0	0.04	11.64	0.00	2.022	2.41	0.06	2.8	97.2	0.0	-4.27	0.62	0.51	—	3.4	0.003	0.71	0.0	0.04	13.35	0.00	2.095	16.87	0.00	5.1	94.9	0.0	-0.97	3.40	0.63	0.55	—	58551	7652	22	0	6	0	0	logfile
✔	5LKH	4068	2023-08-24	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.12	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.79	0.0	0.04	15.60	0.00	2.128	23.73	0.29	6.5	93.5	0.0	-0.63	2.08	0.50	0.55	0.41	37345	4740	5	0	0	0	0	logfile
✔	6V6S	21073	2023-08-09	2019-12-05	4.3	3.91	—	3.8	0.006	0.75	1.0	0.05	13.81	0.00	2.102	10.50	0.63	5.0	94.9	0.1	-4.11	0.58	0.50	—	3.8	0.003	0.69	0.0	0.04	13.90	0.00	2.137	9.65	0.07	3.5	96.5	0.0	0.10	1.08	0.58	0.55	—	106422	13155	53	14	721	0	0	logfile
✔	7U12	26275	2023-08-09	2022-02-19	3.5	3.59	—	4.4	0.011	1.06	0.0	0.07	17.19	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.2	0.004	0.87	0.0	0.06	16.27	0.00	2.121	14.51	0.26	9.5	90.5	0.0	-3.80	2.93	0.34	0.56	1.78	3456	405	6	0	12	0	0	logfile
✔	8GUD	34273	2023-08-10	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.31	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.32	0.00	2.168	17.15	1.85	4.4	95.6	0.0	-1.16	1.14	0.49	0.56	1.07	6814	835	1	0	1	0	0	logfile
✔	6HD5	0201	2023-08-11	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	8G3H	29699	2023-08-10	2023-02-07	3.6	3.80	3.20	3.8	0.016	2.32	9.0	0.26	17.25	0.02	2.228	13.55	4.37	8.7	91.3	0.0	-4.03	0.59	0.52	0.65	3.8	0.004	1.12	0.0	0.09	17.50	0.01	2.020	21.08	0.45	6.6	93.4	0.0	-1.71	2.58	0.62	0.56	0.74	6541	841	1	0	2	0	0	logfile
✔	8DRQ	27681	2023-08-09	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7JMF	22392	2023-08-14	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.08	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	7.7	0.004	0.94	0.0	0.05	11.59	0.01	1.145	21.14	0.00	11.3	88.5	0.2	-3.66	1.53	0.76	0.56	—	120756	13500	12	0	3608	0	0	logfile
✔	7LF0	23296	2023-08-23	2021-01-15	3.68	2.09	3.76	3.7	0.008	1.10	0.0	0.06	10.18	0.01	2.157	7.39	1.09	11.4	87.8	0.8	-4.41	0.51	0.54	1.30	3.6	0.008	1.03	0.0	0.06	14.91	0.01	2.015	24.18	0.91	13.7	86.0	0.3	-3.04	0.99	0.52	0.56	1.25	34548	4542	18	0	0	0	0	logfile
✔	7V4J	31713	2023-08-11	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.003	0.73	0.0	0.05	16.29	0.01	2.111	19.55	0.28	6.6	93.4	0.0	-1.29	0.74	0.62	0.57	1.18	9850	1275	5	0	0	0	0	logfile

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