Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U12	26275	2022-07-03	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.2	0.005	0.86	0.0	0.06	15.96	0.00	2.181	16.28	0.00	10.5	89.5	0.0	-3.98	2.91	0.34	0.57	2.51	3456	405	6	0	12	0	0	logfile
✔	7U0D	26256	2022-07-03	2022-02-17	4.8	7.51	4.74	4.8	0.019	0.85	1.0	0.05	13.05	0.01	1.880	20.22	0.00	9.7	90.1	0.2	-1.37	0.87	0.71	—	4.8	0.018	0.80	1.0	0.05	13.44	0.01	1.883	25.18	0.11	9.5	90.4	0.1	-1.43	1.10	0.88	0.58	—	8188	1071	6	0	1	0	0	logfile
✔	5ZWo	6974	2022-07-06	2018-05-16	3.9	4.04	—	3.8	0.014	1.42	19.0	0.08	14.28	0.01	1.462	25.51	0.63	9.1	90.0	0.9	-4.00	0.65	0.62	1.56	3.8	0.003	0.68	0.0	0.04	14.00	0.00	1.887	10.63	0.15	4.9	94.8	0.3	0.17	0.73	0.62	0.58	1.01	91261	13180	61	594	2	0	0	logfile
✔	7Mi9	23843	2022-07-04	2021-04-16	3.89	3.92	—	3.7	0.006	0.91	1.0	0.05	24.01	0.01	2.008	38.80	2.08	13.2	86.3	0.6	-3.37	0.70	0.48	0.55	3.7	0.011	1.13	2.0	0.04	24.43	0.01	2.024	28.72	0.08	10.3	89.6	0.1	-2.58	1.67	0.74	0.58	0.71	15924	1554	10	170	0	0	0	logfile
✔	7Q5B	13831	2022-07-05	2021-11-03	3.98	3.21	—	3.1	0.004	0.91	0.0	0.05	21.10	0.01	2.231	9.76	0.10	13.2	86.5	0.2	-2.84	0.50	0.39	0.17	3.1	0.011	1.12	1.0	0.05	22.78	0.01	2.015	23.89	0.50	13.6	86.3	0.1	-2.62	1.11	0.59	0.58	0.84	21746	2255	13	168	0	0	0	logfile
✔	7V4J	31713	2022-07-03	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.016	1.42	2.0	0.05	16.73	0.01	1.538	28.06	0.47	7.9	92.1	0.0	-1.65	0.47	0.63	0.58	1.08	9850	1275	5	0	0	0	0	logfile
✔	6Q2J	20572	2022-07-04	2019-08-08	4.1	4.32	—	4.1	0.006	0.96	0.0	0.06	8.65	0.01	1.677	4.31	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.006	0.89	0.0	0.05	11.94	0.00	2.155	11.65	0.07	5.5	94.5	0.0	-1.61	2.28	0.67	0.58	—	13796	1738	8	0	22	0	0	logfile
✔	7DA4	30622	2022-07-02	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	6XS6	22301	2022-07-04	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.54	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.006	0.73	0.0	0.04	15.92	0.01	2.172	8.89	0.15	5.9	94.1	0.0	-0.93	0.35	0.57	0.58	2.34	18294	2357	3	0	0	0	0	logfile
✔	6PWC	20505	2022-07-03	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.71	0.0	0.04	6.38	0.00	2.135	12.03	0.00	6.0	94.0	0.0	-0.57	2.41	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✔	7NCJ	12268	2022-07-03	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.61	1.0	0.05	14.19	0.00	1.945	15.31	0.00	10.3	89.7	0.0	-2.78	1.36	0.70	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7A24	11615	2022-07-08	2020-08-16	3.8	3.92	—	3.8	0.009	1.16	33.0	1.08	14.94	0.01	0.850	22.94	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.012	1.91	2.0	0.33	17.47	0.01	1.886	28.62	0.47	8.5	91.4	0.1	-2.11	1.61	0.59	0.59	0.19	49497	6253	46	0	17	0	0	logfile
✔	6KRD	0756	2022-07-03	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.90	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.008	0.86	1.0	0.05	11.99	0.00	1.822	15.52	0.01	3.3	96.6	0.1	-0.02	1.78	0.63	0.59	—	61005	8006	16	0	0	0	0	logfile
✔	6Q2N	20575	2022-07-03	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.09	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.006	0.93	0.0	0.05	11.85	0.01	2.105	23.58	0.00	12.1	87.8	0.1	-2.99	0.96	0.62	0.59	—	13140	1678	8	0	8	0	0	logfile
✔	6TGC	10498	2022-07-07	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	102.01	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	4.0	0.010	1.25	0.0	0.06	14.68	0.01	1.927	50.23	0.20	13.2	86.5	0.3	-2.23	1.26	0.73	0.59	—	33282	3806	6	0	808	0	0	logfile
✔	6oLK	20115	2022-07-04	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.003	0.69	0.0	0.04	4.93	0.00	2.195	4.38	0.00	8.3	91.7	0.0	-1.09	1.39	0.63	0.59	—	10323	2094	6	0	0	0	0	logfile
✔	7VWZ	32166	2022-07-06	2021-11-12	4.0	2.61	—	2.6	0.006	1.01	0.0	0.06	18.48	0.01	2.148	10.73	1.10	8.8	91.0	0.2	-5.04	0.59	0.58	—	2.6	0.004	0.72	0.0	0.04	19.73	0.00	2.022	16.03	0.38	8.9	91.1	0.0	-2.92	0.78	0.59	0.59	—	34509	4045	11	129	3	0	0	logfile
✔	7X6o	33024	2022-07-05	2022-03-07	3.5	2.65	—	3.8	0.002	0.48	0.0	0.04	8.09	0.00	2.283	3.29	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.008	1.03	1.0	0.05	12.91	0.01	2.072	18.35	0.50	4.8	95.2	0.0	-1.04	1.58	0.64	0.59	1.03	21609	2787	12	0	0	0	0	logfile
✔	6AHD	9624	2022-07-05	2018-08-17	3.8	3.84	—	3.7	0.011	1.38	2.0	0.12	13.79	0.01	1.805	14.28	2.52	7.4	91.7	0.9	-3.55	0.51	0.52	2.11	3.7	0.009	0.90	0.0	0.05	14.45	0.00	1.540	13.37	0.46	6.7	93.1	0.3	-0.58	0.68	0.53	0.59	1.52	85302	14082	65	531	3	0	0	logfile
✔	7JQQ	22441	2022-07-06	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.004	0.84	0.0	0.04	23.06	0.01	1.872	25.07	0.00	9.0	91.0	0.0	-2.58	0.51	0.35	0.59	—	28416	1635	15	705	6	0	0	logfile

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