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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WGC | 32483 | 2023-08-10 | 2021-12-28 | 3.6 | 3.85 | — | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.80 | 0.00 | 2.191 | 10.26 | 0.00 | 3.8 | 96.2 | 0.0 | -0.11 | 0.56 | 0.55 | 1.21 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 16.25 | 0.00 | 2.170 | 10.73 | 0.43 | 4.2 | 95.8 | 0.0 | 0.33 | 0.37 | 0.56 | 0.54 | 0.98 | 6527 | 795 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6B3R | 7042 | 2023-08-23 | 2017-09-22 | 3.8 | 3.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.06 | 10.17 | 0.01 | 2.247 | 4.85 | 0.25 | 8.1 | 91.9 | 0.0 | -4.41 | 0.35 | 0.53 | 1.24 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 15.50 | 0.00 | 2.107 | 12.12 | 0.28 | 6.7 | 93.3 | 0.0 | -0.06 | 1.03 | 0.40 | 0.55 | 1.40 | 35718 | 4506 | 6 | 0 | 48 | 0 | 0 | logfile |
✔ | 7EGA | 31110 | 2023-08-21 | 2021-03-24 | 4.1 | 4.55 | — | 4.1 | 0.008 | 1.08 | 35.0 | 0.07 | 16.87 | 0.01 | 1.445 | 18.65 | 3.89 | 6.5 | 93.1 | 0.4 | -3.75 | 0.60 | 0.28 | — | 3.9 | 0.005 | 0.75 | 0.0 | 0.04 | 15.60 | 0.00 | 1.890 | 17.26 | 0.01 | 6.0 | 93.9 | 0.1 | -0.67 | 1.39 | 0.75 | 0.55 | — | 85697 | 10273 | 49 | 170 | 11 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-08-09 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R91 | 4765 | 2023-08-25 | 2019-04-02 | 4.1 | 5.15 | — | 5.0 | 0.006 | 1.01 | 0.0 | 0.05 | 23.74 | 0.01 | 2.021 | 3.55 | 0.65 | 4.6 | 95.0 | 0.5 | -0.83 | 0.64 | 0.52 | — | 5.0 | 0.003 | 0.67 | 0.0 | 0.04 | 23.98 | 0.00 | 1.835 | 13.74 | 0.00 | 5.5 | 94.4 | 0.1 | -1.38 | 1.01 | 0.66 | 0.55 | — | 40540 | 1969 | 12 | 290 | 0 | 0 | 19063 | logfile |
✔ | 7K8A | 22724 | 2023-08-12 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.86 | 0.01 | 2.225 | 15.74 | 0.34 | 4.6 | 95.3 | 0.1 | -0.56 | 0.46 | 0.42 | 0.55 | 0.22 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YEG | 33772 | 2023-08-10 | 2022-07-05 | 3.73 | 3.29 | 3.71 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.17 | 0.00 | 2.191 | 5.16 | 0.37 | 3.1 | 96.8 | 0.0 | -4.62 | 0.61 | 0.57 | 0.60 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.76 | 0.00 | 2.056 | 11.23 | 0.26 | 5.0 | 95.0 | 0.0 | -1.54 | 3.07 | 0.58 | 0.55 | 1.13 | 49974 | 6306 | 24 | 0 | 51 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2023-08-11 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.81 | 0.00 | 2.233 | 21.48 | 0.00 | 2.7 | 97.3 | 0.0 | -0.42 | 1.96 | 0.75 | 0.55 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NVR | 12610 | 2023-08-23 | 2021-03-15 | 4.5 | 4.38 | 4.40 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 15.01 | 0.00 | 1.807 | 8.62 | 0.01 | 3.9 | 96.0 | 0.0 | 0.72 | 0.75 | 0.57 | — | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.28 | 0.00 | 1.966 | 14.80 | 0.01 | 4.5 | 95.5 | 0.0 | 0.50 | 1.67 | 0.74 | 0.55 | — | 96126 | 11548 | 71 | 128 | 157 | 0 | 0 | logfile |
✔ | 7WZ3 | 32903 | 2023-08-11 | 2022-02-16 | 4.1 | 3.52 | — | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 11.64 | 0.00 | 2.022 | 2.41 | 0.06 | 2.8 | 97.2 | 0.0 | -4.27 | 0.62 | 0.51 | — | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.35 | 0.00 | 2.095 | 16.87 | 0.00 | 5.1 | 94.9 | 0.0 | -0.97 | 3.40 | 0.63 | 0.55 | — | 58551 | 7652 | 22 | 0 | 6 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2023-08-24 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.79 | 0.0 | 0.04 | 15.60 | 0.00 | 2.128 | 23.73 | 0.29 | 6.5 | 93.5 | 0.0 | -0.63 | 2.08 | 0.50 | 0.55 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V6S | 21073 | 2023-08-09 | 2019-12-05 | 4.3 | 3.91 | — | 3.8 | 0.006 | 0.75 | 1.0 | 0.05 | 13.81 | 0.00 | 2.102 | 10.50 | 0.63 | 5.0 | 94.9 | 0.1 | -4.11 | 0.58 | 0.50 | — | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 13.90 | 0.00 | 2.137 | 9.65 | 0.07 | 3.5 | 96.5 | 0.0 | 0.10 | 1.08 | 0.58 | 0.55 | — | 106422 | 13155 | 53 | 14 | 721 | 0 | 0 | logfile |
✔ | 7U12 | 26275 | 2023-08-09 | 2022-02-19 | 3.5 | 3.59 | — | 4.4 | 0.011 | 1.06 | 0.0 | 0.07 | 17.19 | 0.01 | 2.160 | 20.06 | 5.51 | 8.0 | 92.0 | 0.0 | -3.00 | 0.29 | 0.45 | 2.77 | 4.2 | 0.004 | 0.87 | 0.0 | 0.06 | 16.27 | 0.00 | 2.121 | 14.51 | 0.26 | 9.5 | 90.5 | 0.0 | -3.80 | 2.93 | 0.34 | 0.56 | 1.78 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8GUD | 34273 | 2023-08-10 | 2022-09-11 | 2.62 | 2.98 | 2.83 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 14.80 | 0.01 | 2.116 | 20.31 | 0.00 | 6.0 | 94.0 | 0.0 | -2.12 | 0.52 | 0.56 | 1.45 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 17.32 | 0.00 | 2.168 | 17.15 | 1.85 | 4.4 | 95.6 | 0.0 | -1.16 | 1.14 | 0.49 | 0.56 | 1.07 | 6814 | 835 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-08-11 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G3H | 29699 | 2023-08-10 | 2023-02-07 | 3.6 | 3.80 | 3.20 | 3.8 | 0.016 | 2.32 | 9.0 | 0.26 | 17.25 | 0.02 | 2.228 | 13.55 | 4.37 | 8.7 | 91.3 | 0.0 | -4.03 | 0.59 | 0.52 | 0.65 | 3.8 | 0.004 | 1.12 | 0.0 | 0.09 | 17.50 | 0.01 | 2.020 | 21.08 | 0.45 | 6.6 | 93.4 | 0.0 | -1.71 | 2.58 | 0.62 | 0.56 | 0.74 | 6541 | 841 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DRQ | 27681 | 2023-08-09 | 2022-07-21 | 4.16 | 4.28 | 4.60 | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 15.60 | 0.01 | 2.283 | 15.85 | 0.00 | 5.9 | 94.1 | 0.0 | -3.30 | 0.39 | 0.56 | — | 4.1 | 0.003 | 0.81 | 0.0 | 0.05 | 13.41 | 0.00 | 2.156 | 19.67 | 0.00 | 8.1 | 91.9 | 0.0 | -3.21 | 1.78 | 0.41 | 0.56 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JMF | 22392 | 2023-08-14 | 2020-07-31 | 4.5 | 5.06 | — | 4.7 | 0.005 | 0.98 | 0.0 | 0.05 | 10.23 | 0.01 | 1.373 | 8.08 | 0.36 | 11.2 | 88.6 | 0.2 | -4.91 | 0.54 | 0.27 | — | 7.7 | 0.004 | 0.94 | 0.0 | 0.05 | 11.59 | 0.01 | 1.145 | 21.14 | 0.00 | 11.3 | 88.5 | 0.2 | -3.66 | 1.53 | 0.76 | 0.56 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7LF0 | 23296 | 2023-08-23 | 2021-01-15 | 3.68 | 2.09 | 3.76 | 3.7 | 0.008 | 1.10 | 0.0 | 0.06 | 10.18 | 0.01 | 2.157 | 7.39 | 1.09 | 11.4 | 87.8 | 0.8 | -4.41 | 0.51 | 0.54 | 1.30 | 3.6 | 0.008 | 1.03 | 0.0 | 0.06 | 14.91 | 0.01 | 2.015 | 24.18 | 0.91 | 13.7 | 86.0 | 0.3 | -3.04 | 0.99 | 0.52 | 0.56 | 1.25 | 34548 | 4542 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V4J | 31713 | 2023-08-11 | 2021-08-13 | 3.5 | 3.64 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.05 | 13.95 | 0.01 | 2.092 | 19.96 | 0.00 | 8.2 | 91.8 | 0.0 | -1.60 | 0.61 | 0.52 | 1.21 | 3.8 | 0.003 | 0.73 | 0.0 | 0.05 | 16.29 | 0.01 | 2.111 | 19.55 | 0.28 | 6.6 | 93.4 | 0.0 | -1.29 | 0.74 | 0.62 | 0.57 | 1.18 | 9850 | 1275 | 5 | 0 | 0 | 0 | 0 | logfile |