Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5WVE	6690	2022-12-15	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	69.21	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.81	0.0	0.04	13.48	0.00	1.820	22.98	0.01	7.4	91.9	0.7	-1.81	1.59	0.80	0.60	—	78605	9766	39	0	21	0	0	logfile
✔	6YBV	10774	2022-12-11	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.88	0.0	0.05	18.62	0.00	2.034	20.85	0.00	11.0	88.9	0.1	-2.87	3.37	0.34	0.60	0.70	6731	769	5	78	0	0	0	logfile
✔	5ZAL	6905	2022-12-12	2018-02-07	4.7	4.44	—	3.8	0.008	1.43	1.0	0.07	12.67	0.01	2.215	19.14	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.003	0.86	0.0	0.04	13.10	0.01	2.111	26.94	0.00	13.9	85.8	0.3	-2.99	0.84	0.83	0.60	—	12346	1389	3	58	0	0	0	logfile
✔	7ASK	11895	2022-12-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.33	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.32	2.0	0.05	15.46	0.01	2.042	17.93	0.00	18.5	80.0	1.5	-3.37	1.32	0.19	0.60	—	12285	1523	1	0	2	0	0	logfile
✔	7JQQ	22441	2022-12-16	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.005	0.92	0.0	0.05	23.22	0.01	1.853	31.60	0.00	12.8	87.1	0.1	-2.68	0.50	0.35	0.60	—	28416	1635	15	705	6	0	0	logfile
✔	8ETH	24409	2022-12-15	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	16.49	0.01	2.088	10.21	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.004	0.59	0.0	0.04	16.56	0.00	2.062	10.80	0.44	4.3	95.5	0.2	0.26	1.11	0.63	0.60	2.46	77577	6161	42	1508	1	0	0	logfile
✔	7F46	31444	2022-12-11	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.36	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.74	0.0	0.05	13.01	0.01	2.096	17.53	0.00	7.2	92.8	0.0	-2.03	1.21	0.79	0.60	—	6564	842	6	0	2	0	0	logfile
✔	8DGA	27420	2022-12-13	2022-06-23	3.73	4.05	3.82	3.9	0.007	1.17	0.0	0.06	13.53	0.01	2.210	8.43	0.12	7.0	92.7	0.3	-2.35	0.70	0.60	0.89	3.8	0.003	0.68	0.0	0.04	15.52	0.00	2.124	16.56	0.44	5.6	94.1	0.4	-0.27	1.02	0.70	0.60	0.84	15473	1811	5	41	1	0	0	logfile
✔	6VHA	21201	2022-12-11	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.75	0.0	0.05	13.16	0.00	2.339	14.02	0.00	9.8	90.2	0.0	-4.32	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	8DCX	27330	2022-12-12	2022-06-17	2.8	3.32	3.57	3.4	0.003	0.58	0.0	0.04	14.71	0.00	2.195	13.68	0.00	5.4	94.6	0.1	-0.04	0.48	0.60	0.77	3.4	0.003	0.69	0.0	0.04	17.11	0.00	2.212	14.98	1.40	4.6	95.4	0.1	0.17	0.46	0.45	0.60	0.63	9627	1166	2	0	0	0	0	logfile
✔	8BC0	15958	2022-12-12	2022-10-14	3.09	3.54	2.95	3.5	0.004	0.59	0.0	0.04	13.16	0.01	2.052	17.33	7.06	5.0	95.0	0.0	0.18	0.54	0.60	1.08	3.5	0.004	0.72	0.0	0.04	15.54	0.01	2.079	21.25	0.34	4.9	95.1	0.0	-0.06	0.85	0.54	0.60	0.89	10861	1316	4	0	6	0	0	logfile
✔	7o7S	12755	2022-12-21	2021-04-13	4.3	4.69	—	4.4	0.009	1.27	7.0	0.07	16.68	0.02	1.857	21.70	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.91	0.0	0.05	14.82	0.01	2.082	27.87	0.02	14.2	85.6	0.1	-3.94	2.52	0.76	0.60	—	41466	5236	17	0	44	0	0	logfile
✔	6XQB	22288	2022-12-13	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	14.03	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.9	0.003	0.69	0.0	0.04	14.25	0.00	1.914	22.48	0.23	10.4	89.6	0.0	-2.39	1.28	0.76	0.60	0.46	16323	1008	7	15	3	0	7987	logfile
✔	6RUo	10007	2022-12-22	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	8.06	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.004	0.81	0.0	0.05	17.45	0.00	2.062	19.29	0.53	8.4	91.6	0.0	-2.64	2.43	0.68	0.60	0.65	50792	6086	26	93	8	0	0	logfile
✔	7KXY	23067	2022-12-12	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.44	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.71	0.01	2.101	25.46	0.00	18.3	81.6	0.1	-4.95	0.63	0.63	0.61	—	9510	1181	2	0	0	0	0	logfile
✔	7MFD	23813	2022-12-12	2021-04-09	3.66	3.14	—	3.1	0.004	0.67	1.0	0.04	15.46	0.00	2.112	17.86	0.20	7.1	92.9	0.0	-2.17	0.68	0.61	1.02	3.1	0.003	0.71	0.0	0.05	17.40	0.00	2.158	17.47	0.51	4.6	95.4	0.0	-1.90	0.44	0.68	0.61	0.88	9127	1147	6	0	3	0	0	logfile
✔	6R9B	4769	2022-12-15	2019-04-03	3.8	3.76	—	3.6	0.003	0.88	1.0	0.06	9.76	0.01	2.296	4.57	0.70	8.0	91.8	0.2	-4.57	0.63	0.51	0.46	3.7	0.004	0.84	0.0	0.05	15.14	0.00	2.110	15.21	0.48	9.5	90.4	0.1	-1.84	1.62	0.70	0.61	0.93	25880	3401	7	0	0	0	0	logfile
✔	6R9G	4770	2022-12-15	2019-04-03	3.7	3.76	—	3.6	0.003	0.87	1.0	0.05	9.85	0.01	2.307	4.54	0.33	8.0	91.9	0.1	-4.32	0.67	0.54	0.47	3.6	0.003	0.81	0.0	0.05	15.36	0.00	2.119	16.32	0.29	8.9	91.0	0.0	-1.67	1.20	0.72	0.61	0.76	25944	3421	7	0	0	0	0	logfile
✔	6BGJ	7096	2022-12-11	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.69	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.87	0.0	0.05	14.40	0.00	2.083	18.62	0.69	13.1	86.5	0.4	-1.27	1.40	0.50	0.61	1.51	7418	980	4	0	2	0	0	logfile
✔	7U5S	26357	2022-12-21	2022-03-02	4.16	3.37	4.30	4.2	0.008	1.02	0.0	0.06	14.83	0.01	2.265	9.16	0.00	6.0	94.0	0.0	-4.93	0.57	0.42	—	4.1	0.003	0.78	0.0	0.05	13.45	0.00	2.110	16.92	0.00	5.0	95.0	0.0	-1.27	1.05	0.65	0.61	—	23086	3006	2	0	0	0	0	logfile

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