Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RiU	4898	2021-12-01	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	5M6S	3451	2021-12-01	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.02	0.05	—	1593	98	1	0	0	0	793	logfile
✔	7N3P	24143	2021-12-01	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	18.98	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.004	0.60	0.0	0.03	19.71	0.01	2.136	14.35	0.27	2.2	97.8	0.0	1.41	0.44	0.78	0.82	2.54	9055	454	4	259	0	0	0	logfile
✔	6RJU	4906	2021-12-01	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6TYi	20583	2021-12-01	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.002	0.52	0.0	0.03	17.16	0.00	2.221	6.27	0.11	2.8	97.2	0.0	3.28	1.18	0.70	0.81	1.28	9184	1186	11	0	4	0	0	logfile
✔	6X0U	21984	2021-12-01	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.003	0.71	0.0	0.03	17.78	0.01	2.197	6.38	0.58	3.7	96.3	0.0	1.26	0.82	0.27	0.78	2.36	3091	398	4	0	0	0	0	logfile
✔	7KAR	22781	2021-12-02	2020-10-01	4.0	4.56	4.12	4.3	0.003	0.59	0.0	0.04	12.73	0.00	2.224	7.84	0.00	2.8	97.2	0.0	-1.41	0.66	0.83	—	4.3	0.003	0.65	0.0	0.04	14.59	0.00	2.156	9.64	0.09	2.2	97.8	0.0	1.79	0.53	0.67	0.84	—	10435	1341	6	0	0	0	0	logfile
✔	7CMH	30406	2021-12-01	2020-07-27	3.4	3.57	—	3.6	0.006	1.05	0.0	0.06	15.38	0.01	2.214	9.49	1.18	8.6	90.7	0.8	-5.98	0.63	0.80	2.75	3.5	0.006	0.79	0.0	0.04	16.32	0.01	2.138	8.75	0.65	7.8	92.1	0.1	-1.00	0.60	0.65	0.83	1.83	7368	928	7	0	10	0	0	logfile
✔	7BTX	30190	2021-12-02	2020-04-03	2.8	2.99	—	3.0	0.008	1.09	2.0	0.06	14.93	0.01	2.280	4.49	0.26	8.1	91.1	0.7	-4.94	0.68	0.86	4.33	3.0	0.003	0.67	0.0	0.04	16.81	0.01	2.178	8.68	2.03	8.2	91.5	0.2	-0.66	0.54	0.68	0.87	3.88	10168	1268	4	0	0	0	0	logfile
✔	7Ji3	22343	2021-12-01	2020-07-22	3.46	4.28	—	4.0	0.005	0.79	0.0	0.05	13.46	0.01	2.365	6.77	0.00	3.6	96.4	0.0	-5.13	0.64	0.72	2.89	4.0	0.004	0.79	0.0	0.04	14.92	0.00	2.224	11.39	0.64	3.4	96.6	0.0	0.42	0.82	0.68	0.84	2.40	6000	777	3	0	0	0	0	logfile
✔	6Z3Z	11067	2021-12-01	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.80	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.010	1.06	0.0	0.04	15.74	0.01	2.225	15.97	0.46	7.7	92.3	0.0	0.03	0.66	0.63	0.72	0.90	6115	769	2	0	0	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7K18	22621	2021-12-01	2020-09-07	3.3	3.43	—	3.4	0.006	1.08	1.0	0.05	18.31	0.01	1.936	21.46	3.41	7.9	91.8	0.3	-3.42	0.53	0.72	1.76	3.4	0.004	0.73	0.0	0.04	17.82	0.00	2.071	13.78	0.50	6.8	93.1	0.1	-0.16	0.66	0.53	0.75	1.54	9749	1195	6	0	19	0	0	logfile
✔	7A5J	11645	2021-12-01	2020-08-21	3.1	2.70	3.04	3.0	0.009	0.98	0.0	0.05	17.10	0.01	1.265	4.14	0.84	5.2	94.7	0.2	-4.41	0.63	0.73	2.66	2.9	0.006	0.73	1.0	0.04	17.75	0.01	1.400	10.73	0.51	4.4	95.6	0.0	-0.76	0.53	0.65	0.79	2.48	106132	8540	71	1694	205	0	0	logfile
✔	7A6U	11674	2021-12-01	2020-08-26	3.62	3.94	3.83	3.9	0.006	0.88	0.0	0.05	14.62	0.01	2.283	2.81	0.76	2.7	97.3	0.0	-3.37	0.72	0.85	2.18	3.9	0.004	0.71	0.0	0.04	16.16	0.01	2.043	9.53	0.19	2.7	97.3	0.0	1.77	0.97	0.72	0.85	2.09	10140	1328	8	0	4	0	0	logfile
✔	7JSH	22454	2021-12-01	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	7JVP	22509	2021-12-01	2020-08-22	2.9	3.02	—	3.0	0.005	0.98	0.0	0.07	8.69	0.01	2.208	5.92	0.00	1.3	98.7	0.0	2.55	0.62	0.76	2.94	3.0	0.004	0.61	0.0	0.04	15.73	0.01	2.119	12.36	2.69	2.4	97.6	0.0	0.61	0.84	0.65	0.84	3.01	8486	1041	6	0	12	0	0	logfile
✔	7KAK	22773	2021-12-02	2020-10-01	3.9	4.59	4.06	4.2	0.003	0.54	0.0	0.04	11.57	0.00	2.246	6.34	0.00	2.9	97.1	0.0	-1.34	0.66	0.83	1.49	4.2	0.004	0.70	0.0	0.04	14.15	0.00	2.215	11.64	0.28	3.6	96.4	0.0	1.69	0.64	0.66	0.84	1.72	10437	1371	6	0	0	0	0	logfile
✔	7Ji0	22341	2021-12-01	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.003	0.49	0.0	0.04	15.52	0.00	2.212	4.08	2.46	4.0	96.0	0.0	1.31	0.46	0.71	0.83	3.40	3556	432	4	0	0	0	0	logfile
✔	7L0P	23099	2021-12-01	2020-12-12	4.1	3.94	3.91	4.0	0.006	1.06	1.0	0.06	15.28	0.01	2.231	8.38	0.53	6.8	92.9	0.3	-3.81	0.56	0.72	—	4.0	0.003	0.72	0.0	0.04	14.46	0.00	2.171	15.17	0.13	4.7	95.2	0.1	-0.31	0.68	0.59	0.73	—	6953	888	5	0	0	0	0	logfile

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