Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LZS	4130	2021-06-04	2016-10-02	3.31	3.42	3.34	3.3	0.007	1.16	9.0	0.10	18.08	0.01	1.121	2.64	6.66	6.0	93.6	0.5	-2.99	0.80	0.87	2.60	3.3	0.003	0.59	0.0	0.03	17.00	0.00	1.953	11.05	0.46	3.6	96.3	0.0	-0.20	0.74	0.80	0.86	2.03	220934	12153	105	5748	285	0	0	logfile
✔	5iQR	8107	2021-06-06	2016-03-11	3.0	3.10	3.03	3.1	0.008	1.26	41.0	0.10	17.19	0.02	0.899	7.46	6.07	7.5	91.0	1.5	-2.52	0.76	0.81	1.93	3.0	0.003	0.68	0.0	0.03	16.56	0.01	1.100	14.95	4.11	5.5	94.3	0.2	-0.59	1.69	0.82	0.86	1.92	154519	6570	74	4794	303	2	0	logfile
✔	5V6P	8637	2021-06-01	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	0.87	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.66	0.0	0.03	12.92	0.00	1.917	13.38	0.00	2.6	97.0	0.4	2.71	2.58	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	5MDY	3492	2021-06-04	2016-11-13	3.35	3.40	3.43	3.4	0.009	1.39	22.0	0.11	17.08	0.02	1.409	4.34	9.85	6.0	93.4	0.6	-2.09	0.78	0.85	2.23	3.4	0.003	0.64	0.0	0.03	15.55	0.01	1.879	9.01	0.52	4.1	95.8	0.1	0.16	0.66	0.77	0.83	1.89	149460	6323	68	4638	452	3	0	logfile
✔	5o61	3751	2021-06-05	2017-06-03	3.31	3.39	—	3.3	0.007	0.99	0.0	0.04	17.09	0.01	1.579	7.48	10.91	4.7	95.1	0.2	-3.02	0.83	0.88	2.03	3.3	0.004	0.60	0.0	0.03	16.72	0.01	1.170	11.61	0.85	4.6	95.4	0.0	-0.06	0.70	0.83	0.87	1.53	151463	6088	73	4830	631	0	0	logfile
✔	6DZi	8932	2021-06-05	2018-07-05	3.46	3.52	—	3.5	0.011	1.05	21.0	0.07	15.81	0.01	1.028	6.95	0.62	9.7	89.5	0.8	-4.46	0.78	0.79	2.41	3.5	0.004	0.62	0.0	0.03	16.16	0.01	2.017	10.95	0.47	6.7	93.2	0.0	-1.28	0.66	0.82	0.83	1.67	150868	6283	56	4748	0	0	0	logfile
✔	6PX1	20516	2021-06-02	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.58	0.0	0.03	28.86	0.00	2.169	8.65	0.00	1.8	98.2	0.0	2.28	0.49	0.80	0.84	2.74	11937	752	10	290	0	0	0	logfile
✔	6SXo	10344	2021-06-02	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.69	0.00	2.122	10.12	0.58	3.7	96.3	0.0	-1.27	0.75	0.27	0.76	1.90	14894	973	8	326	0	0	0	logfile
✔	6o0Z	0585	2021-06-02	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.47	0.0	0.03	16.48	0.00	2.156	4.03	0.41	4.8	95.2	0.0	0.22	0.35	0.86	0.89	3.22	11912	1288	4	135	0	0	0	logfile
✔	5A6E	3062	2021-06-02	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	7.88	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	5.0	0.003	0.56	0.0	0.03	10.48	0.00	1.935	11.60	0.00	5.8	94.2	0.0	-0.33	1.60	0.41	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6G4S	4348	2021-06-05	2018-03-28	4.0	4.37	—	3.9	0.005	1.05	0.0	0.07	21.38	0.01	1.911	1.77	0.00	8.6	91.2	0.2	-3.72	0.72	0.69	—	3.9	0.003	0.57	0.0	0.03	20.93	0.00	2.098	4.65	0.00	7.7	92.3	0.0	-0.18	2.29	0.82	0.73	—	48967	5224	33	1613	768	0	0	logfile
✔	6DZP	8937	2021-06-03	2018-07-05	3.42	3.50	—	3.4	0.012	1.08	1.0	0.06	15.97	0.01	1.028	6.66	0.60	9.8	89.2	1.0	-4.67	0.79	0.82	3.24	3.4	0.004	0.61	0.0	0.03	16.04	0.01	2.028	9.27	0.53	6.5	93.5	0.0	-1.21	3.29	0.82	0.85	2.22	98097	3715	34	3237	0	0	0	logfile
✔	6G4W	4349	2021-06-05	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	21.52	0.01	0.760	5.01	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.003	0.60	0.0	0.03	23.28	0.00	2.030	8.16	0.00	9.7	90.3	0.0	-0.08	2.80	0.88	0.72	—	45223	4589	31	1563	768	0	0	logfile
✔	5LZU	4132	2021-06-04	2016-10-02	3.75	3.82	3.81	3.8	0.009	1.25	6.0	0.10	18.27	0.01	1.175	2.57	6.63	6.5	93.1	0.4	-2.96	0.78	0.85	1.70	3.8	0.003	0.64	0.0	0.03	17.59	0.01	1.892	13.37	0.60	4.1	95.9	0.1	-0.53	1.60	0.77	0.84	1.18	219122	12111	105	5678	266	0	0	logfile
✔	6QT0	4630	2021-06-05	2019-02-22	3.4	3.49	—	3.4	0.010	0.94	3.0	0.05	16.30	0.01	1.931	4.32	1.29	7.1	92.8	0.1	-4.69	0.85	0.87	3.24	3.4	0.004	0.57	0.0	0.03	16.17	0.00	2.012	9.21	0.60	6.1	93.9	0.0	-1.61	1.13	0.86	0.88	2.58	124065	6362	50	3441	5	0	0	logfile
✔	6PVK	20491	2021-06-05	2019-07-20	3.4	3.47	—	3.4	0.010	1.03	5.0	0.05	19.36	0.01	1.370	14.05	6.50	10.3	88.7	1.0	-4.94	0.69	0.69	1.32	3.4	0.004	0.65	0.0	0.03	18.07	0.00	2.040	10.74	0.67	8.3	91.6	0.1	-2.53	0.74	0.79	0.80	1.63	60554	1791	18	2169	0	2	0	logfile
✔	6E9Z	9021	2021-06-04	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.16	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.61	0.0	0.03	16.06	0.00	1.890	8.31	0.31	2.9	97.1	0.0	2.85	1.61	0.58	0.81	1.32	32652	2025	9	0	0	0	16830	logfile
✔	5LZV	4133	2021-06-05	2016-10-02	3.35	3.52	3.35	3.5	0.007	1.08	5.0	0.09	17.89	0.01	1.569	1.41	5.60	5.8	94.0	0.2	-2.75	0.77	0.86	2.21	3.5	0.003	0.61	0.0	0.03	17.02	0.00	1.930	10.57	0.70	3.7	96.3	0.0	-0.01	1.59	0.79	0.88	2.01	223874	12704	109	5678	310	0	0	logfile
✔	6E9Y	9020	2021-06-05	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	24.85	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.52	0.0	0.03	11.14	0.00	1.989	8.91	0.00	1.3	98.7	0.0	2.94	1.56	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6ME0	9105	2021-06-03	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.72	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.003	0.60	0.0	0.03	17.30	0.00	1.925	17.38	0.28	9.1	90.9	0.0	-2.22	1.22	0.89	0.81	1.78	21539	414	4	845	33	0	0	logfile

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