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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WB0 | 32391 | 2023-04-21 | 2021-12-15 | 3.2 | 3.52 | — | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 18.37 | 0.00 | 2.136 | 7.20 | 0.00 | 3.3 | 96.6 | 0.1 | 0.54 | 0.70 | 0.73 | 1.78 | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 19.27 | 0.00 | 2.184 | 8.33 | 0.00 | 4.3 | 95.6 | 0.1 | 0.39 | 1.06 | 0.71 | 0.77 | 1.00 | 10096 | 797 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 6o1D | 0586 | 2023-04-22 | 2019-02-19 | 3.395 | 3.57 | — | 3.5 | 0.010 | 0.95 | 1.0 | 0.05 | 28.08 | 0.01 | 2.317 | 2.17 | 0.00 | 3.4 | 96.6 | 0.0 | -4.72 | 0.79 | 0.87 | 4.13 | 3.5 | 0.003 | 0.57 | 0.0 | 0.03 | 27.97 | 0.00 | 2.190 | 7.68 | 0.16 | 2.3 | 97.7 | 0.0 | 0.33 | 0.54 | 0.79 | 0.88 | 2.73 | 11982 | 761 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7N0K | 24107 | 2023-04-20 | 2021-05-25 | 3.5 | 4.16 | — | 4.1 | 0.003 | 0.56 | 0.0 | 0.03 | 18.36 | 0.00 | 2.238 | 8.16 | 7.46 | 1.0 | 99.0 | 0.0 | -2.20 | 0.63 | 0.77 | 1.65 | 4.1 | 0.003 | 0.61 | 0.0 | 0.03 | 19.19 | 0.00 | 2.266 | 8.55 | 0.93 | 2.3 | 97.7 | 0.0 | 3.43 | 0.71 | 0.60 | 0.75 | 0.87 | 5154 | 626 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q49 | 13799 | 2023-04-21 | 2021-10-29 | 3.72 | 4.35 | 3.97 | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 13.93 | 0.01 | 1.995 | 6.54 | 0.19 | 2.9 | 97.1 | 0.0 | -1.50 | 0.67 | 0.70 | 2.02 | 4.2 | 0.003 | 0.62 | 0.0 | 0.03 | 16.57 | 0.00 | 1.930 | 7.41 | 0.38 | 3.4 | 96.6 | 0.0 | 1.29 | 0.92 | 0.66 | 0.67 | 1.19 | 10124 | 616 | 8 | 0 | 26 | 1 | 4788 | logfile |
✔ | 7K60 | 22685 | 2023-04-25 | 2020-09-17 | 3.12 | 3.33 | — | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 26.72 | 0.00 | 2.175 | 9.32 | 0.09 | 2.0 | 98.0 | 0.0 | 0.43 | 0.74 | 0.73 | 1.70 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 27.37 | 0.00 | 2.105 | 10.67 | 0.36 | 2.8 | 97.2 | 0.0 | 1.07 | 0.54 | 0.76 | 0.77 | 1.59 | 18330 | 1298 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7TRF | 26088 | 2023-04-22 | 2022-01-28 | 3.7 | 4.03 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 16.37 | 0.00 | 2.206 | 7.56 | 0.10 | 4.6 | 95.3 | 0.1 | -0.55 | 0.83 | 0.81 | 1.72 | 3.6 | 0.002 | 0.55 | 0.0 | 0.03 | 16.65 | 0.00 | 2.205 | 6.85 | 0.10 | 3.0 | 97.0 | 0.0 | 1.30 | 0.66 | 0.83 | 0.82 | 1.63 | 13581 | 1106 | 5 | 224 | 0 | 0 | 0 | logfile |
✔ | 6VAK | 21141 | 2023-04-26 | 2019-12-17 | 3.48 | 3.85 | — | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.36 | 0.00 | 2.047 | 7.47 | 2.96 | 8.2 | 91.8 | 0.0 | -2.80 | 0.73 | 0.81 | 3.28 | 3.8 | 0.002 | 0.58 | 0.0 | 0.03 | 16.38 | 0.00 | 2.190 | 5.71 | 0.72 | 5.9 | 94.1 | 0.0 | 2.31 | 0.55 | 0.70 | 0.82 | 2.80 | 22781 | 2992 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TRE | 26087 | 2023-04-22 | 2022-01-28 | 3.5 | 3.56 | — | 3.5 | 0.006 | 0.77 | 0.0 | 0.05 | 16.75 | 0.01 | 2.188 | 7.45 | 0.11 | 6.4 | 93.6 | 0.0 | -0.75 | 0.77 | 0.77 | 2.23 | 3.5 | 0.004 | 0.59 | 0.0 | 0.03 | 17.07 | 0.00 | 2.219 | 7.53 | 0.53 | 4.1 | 95.9 | 0.0 | 0.60 | 0.73 | 0.78 | 0.83 | 2.14 | 13411 | 1086 | 4 | 224 | 0 | 0 | 0 | logfile |
✔ | 7V90 | 31806 | 2023-04-22 | 2021-08-24 | 3.5 | 3.21 | 3.42 | 3.5 | 0.005 | 0.73 | 3.0 | 0.04 | 26.19 | 0.00 | 2.219 | 8.45 | 4.01 | 4.7 | 94.8 | 0.5 | -0.16 | 0.66 | 0.78 | 2.00 | 3.4 | 0.003 | 0.54 | 0.0 | 0.03 | 27.54 | 0.00 | 2.295 | 6.73 | 0.15 | 3.3 | 96.7 | 0.0 | 2.43 | 1.13 | 0.72 | 0.84 | 2.39 | 12148 | 781 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7LPC | 23476 | 2023-04-23 | 2021-02-11 | 3.06 | 2.87 | 2.85 | 3.1 | 0.013 | 1.23 | 0.0 | 0.21 | 20.11 | 0.00 | 2.188 | 5.69 | 0.00 | 2.0 | 98.0 | 0.0 | 0.83 | 0.64 | 0.80 | 2.87 | 3.1 | 0.002 | 0.44 | 0.0 | 0.03 | 14.73 | 0.00 | 2.212 | 6.03 | 0.07 | 2.4 | 97.6 | 0.0 | 2.33 | 0.57 | 0.66 | 0.84 | 2.71 | 15256 | 1816 | 8 | 0 | 40 | 0 | 0 | logfile |
✔ | 7MVV | 24057 | 2023-04-27 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.98 | 0.00 | 2.021 | 7.18 | 0.07 | 3.0 | 97.0 | 0.0 | 2.84 | 0.96 | 0.89 | 0.82 | 1.13 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✔ | 7XQ9 | 33391 | 2023-04-25 | 2022-05-07 | 3.3 | 3.62 | 3.55 | 3.8 | 0.005 | 0.83 | 0.0 | 0.06 | 14.70 | 0.01 | 2.253 | 1.72 | 3.89 | 3.6 | 96.4 | 0.0 | -2.05 | 0.52 | 0.82 | 2.74 | 3.8 | 0.002 | 0.51 | 0.0 | 0.03 | 15.61 | 0.00 | 2.205 | 4.12 | 0.14 | 2.2 | 97.8 | 0.0 | 3.52 | 0.53 | 0.54 | 0.83 | 2.53 | 19632 | 2412 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E0P | 8949 | 2023-04-23 | 2018-07-06 | 2.6 | 2.80 | 2.51 | 2.7 | 0.007 | 0.85 | 0.0 | 0.05 | 25.48 | 0.01 | 2.253 | 2.30 | 0.00 | 4.8 | 95.2 | 0.0 | -2.18 | 0.79 | 0.86 | 4.43 | 2.7 | 0.003 | 0.61 | 0.0 | 0.03 | 26.81 | 0.00 | 2.163 | 7.99 | 1.17 | 4.0 | 96.0 | 0.0 | 1.43 | 0.51 | 0.79 | 0.87 | 3.29 | 15567 | 1220 | 12 | 290 | 0 | 0 | 0 | logfile |
✔ | 6SXo | 10344 | 2023-04-23 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 16.45 | 0.01 | 2.142 | 5.99 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.003 | 0.60 | 0.0 | 0.03 | 16.58 | 0.00 | 2.112 | 10.83 | 0.70 | 3.9 | 96.1 | 0.0 | -1.17 | 0.66 | 0.26 | 0.77 | 1.97 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✔ | 6PX1 | 20516 | 2023-04-22 | 2019-07-24 | 3.3 | 3.48 | — | 3.4 | 0.006 | 0.87 | 0.0 | 0.05 | 28.73 | 0.01 | 2.228 | 2.28 | 0.00 | 1.9 | 98.1 | 0.0 | -2.98 | 0.79 | 0.83 | 3.70 | 3.4 | 0.003 | 0.56 | 0.0 | 0.03 | 28.54 | 0.00 | 2.105 | 9.02 | 0.00 | 1.8 | 98.2 | 0.0 | 2.61 | 1.13 | 0.79 | 0.84 | 2.47 | 11937 | 752 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7K5X | 22683 | 2023-04-25 | 2020-09-17 | 2.93 | 3.28 | — | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 26.42 | 0.00 | 2.211 | 5.79 | 0.09 | 2.2 | 97.8 | 0.0 | 1.31 | 0.76 | 0.82 | 3.15 | 3.1 | 0.004 | 0.59 | 0.0 | 0.03 | 27.56 | 0.00 | 2.215 | 6.81 | 1.91 | 2.4 | 97.6 | 0.0 | 1.63 | 1.40 | 0.79 | 0.86 | 2.34 | 18291 | 1296 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 6JYL | 9718 | 2023-04-23 | 2019-04-26 | 3.37 | 4.00 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 24.45 | 0.01 | 2.086 | 2.75 | 0.28 | 4.8 | 95.0 | 0.2 | -3.67 | 0.90 | 0.87 | 2.92 | 3.4 | 0.003 | 0.58 | 0.0 | 0.03 | 24.61 | 0.00 | 1.434 | 7.64 | 0.19 | 4.1 | 95.9 | 0.0 | 0.80 | 0.55 | 0.90 | 0.88 | 1.97 | 16136 | 1265 | 11 | 292 | 3 | 0 | 0 | logfile |
✔ | 7BG9 | 12174 | 2023-04-23 | 2021-01-06 | 3.8 | 3.88 | — | 3.7 | 0.013 | 1.64 | 6.0 | 0.11 | 17.68 | 0.01 | 1.518 | 7.91 | 0.75 | 12.0 | 86.5 | 1.6 | -5.05 | 0.81 | 0.82 | 2.36 | 3.6 | 0.002 | 0.66 | 0.0 | 0.03 | 17.72 | 0.01 | 2.055 | 9.99 | 0.11 | 6.2 | 93.8 | 0.0 | -0.56 | 1.80 | 0.80 | 0.78 | 1.65 | 14233 | 1085 | 5 | 262 | 0 | 0 | 0 | logfile |
✔ | 7YoJ | 33983 | 2023-04-22 | 2022-08-01 | 3.36 | 3.79 | 3.58 | 3.7 | 0.005 | 0.87 | 0.0 | 0.05 | 20.71 | 0.01 | 2.304 | 7.98 | 2.19 | 5.9 | 93.6 | 0.5 | -2.03 | 0.77 | 0.77 | 1.75 | 3.6 | 0.003 | 0.65 | 0.0 | 0.03 | 20.44 | 0.00 | 2.094 | 13.72 | 0.27 | 5.3 | 94.7 | 0.0 | 0.21 | 1.01 | 0.77 | 0.81 | 1.68 | 11545 | 867 | 4 | 216 | 0 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2023-04-22 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.004 | 0.60 | 0.0 | 0.03 | 10.41 | 0.00 | 2.080 | 11.78 | 0.00 | 5.3 | 94.7 | 0.0 | -0.72 | 1.45 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |