Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WDM	21641	2021-04-04	2020-03-31	3.6	3.93	3.85	3.8	0.006	0.96	0.0	0.08	13.27	0.01	1.315	8.32	0.61	10.3	88.0	1.7	-4.77	0.82	0.83	1.11	3.8	0.003	0.64	0.0	0.03	15.33	0.01	2.040	18.06	0.10	9.2	90.7	0.2	-2.14	0.76	0.83	0.84	1.23	150220	6025	58	4810	0	0	0	logfile
✔	6WDF	21634	2021-04-04	2020-03-31	3.3	3.73	3.77	3.6	0.006	0.94	0.0	0.08	13.51	0.01	1.310	11.71	0.94	11.6	86.6	1.8	-4.80	0.81	0.82	1.42	3.5	0.003	0.62	0.0	0.03	15.20	0.00	1.984	16.61	0.02	8.7	91.1	0.2	-2.07	1.55	0.82	0.83	1.22	148582	6025	59	4733	0	0	0	logfile
✔	6L3V	0827	2021-04-02	2019-10-15	2.63	2.90	2.72	2.9	0.010	0.92	0.0	0.04	16.68	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.62	0.0	0.03	13.96	0.01	2.070	2.86	0.00	0.7	99.3	0.0	2.11	3.69	0.59	0.86	3.22	19416	1206	12	0	6	0	9528	logfile
✔	7BV8	30215	2021-04-03	2020-04-09	3.14	3.53	—	3.5	0.007	0.75	0.0	0.04	15.53	0.01	2.007	9.09	0.29	8.3	91.5	0.3	-4.23	0.72	0.82	3.09	3.5	0.003	0.52	0.0	0.03	14.72	0.00	2.064	7.90	0.14	4.9	95.0	0.1	-1.29	1.14	0.71	0.83	2.84	91505	3436	32	3017	0	0	0	logfile
✔	6T93	10408	2021-04-02	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.73	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.63	0.0	0.03	27.44	0.00	2.115	10.81	0.00	2.3	97.7	0.0	2.69	2.07	0.87	0.87	1.96	12199	758	10	302	0	0	0	logfile
✔	6XiR	22198	2021-04-08	2020-06-21	3.2	3.43	3.14	3.3	0.007	0.85	0.0	0.04	16.88	0.01	0.432	6.26	0.09	10.9	88.9	0.3	-4.22	0.74	0.83	2.14	3.3	0.002	0.58	0.0	0.03	16.44	0.00	2.040	11.72	0.01	9.8	90.1	0.1	-1.95	1.46	0.75	0.84	1.83	197132	10763	82	5246	6	0	0	logfile
✔	6ZTP	11423	2021-04-07	2020-07-20	3.0	2.63	3.07	2.9	0.013	1.11	0.0	0.06	16.32	0.02	0.284	6.43	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.80	3.0	0.002	0.64	0.0	0.03	14.22	0.01	1.254	10.02	0.03	3.6	96.3	0.1	0.05	2.18	0.81	0.87	2.69	172846	8886	79	4793	491	0	0	logfile
✔	6ZTM	11420	2021-04-07	2020-07-20	3.3	3.40	3.35	3.2	0.014	1.17	0.0	0.07	16.41	0.02	1.048	8.62	6.58	6.3	93.2	0.5	-2.22	0.87	0.83	1.41	3.2	0.003	0.63	0.0	0.03	14.55	0.01	1.173	11.72	0.03	4.3	95.7	0.0	-0.10	1.72	0.87	0.84	1.47	171689	8739	70	4797	424	0	0	logfile
✔	6PC8	20299	2021-04-01	2019-06-16	2.9	3.26	—	3.1	0.006	0.54	0.0	0.03	12.71	0.02	1.931	3.23	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.005	0.65	0.0	0.03	14.30	0.01	2.106	8.74	0.00	8.7	91.2	0.1	-1.45	1.26	0.73	0.88	3.73	72169	967	8	3015	1	0	0	logfile
✔	6PCH	20300	2021-04-01	2019-06-17	2.9	3.23	—	3.1	0.006	0.51	0.0	0.02	12.73	0.02	1.702	3.89	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.004	0.65	0.0	0.03	14.99	0.01	2.012	10.64	0.00	9.3	90.5	0.1	-2.01	0.56	0.63	0.82	3.54	72134	964	8	3015	1	0	0	logfile
✔	6YBW	10775	2021-04-05	2020-03-18	3.1	3.30	2.98	3.2	0.008	1.05	0.0	0.05	16.82	0.02	2.097	4.21	3.04	3.7	96.3	0.0	-2.06	0.74	0.87	3.02	3.2	0.002	0.60	0.0	0.03	15.51	0.01	2.016	7.49	0.00	2.6	97.4	0.0	0.07	1.15	0.75	0.88	3.13	52840	3374	30	1248	61	0	0	logfile
✔	7JoA	22409	2021-04-02	2020-08-06	3.3	3.05	—	3.2	0.009	0.78	0.0	0.04	26.00	0.01	2.206	6.07	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.003	0.58	0.0	0.03	25.72	0.00	2.279	5.85	0.00	2.1	97.9	0.0	1.88	4.79	0.82	0.86	1.92	14994	1125	11	290	1	0	0	logfile
✔	6T7D	10394	2021-04-01	2019-10-21	4.4	4.45	4.29	4.1	0.005	0.86	0.0	0.05	32.64	0.01	2.107	2.55	0.00	2.0	98.0	0.0	-2.34	0.86	0.77	—	4.1	0.006	0.70	0.0	0.03	32.58	0.00	2.106	16.55	0.00	5.6	94.4	0.0	2.58	0.82	0.87	0.83	—	8209	853	11	234	0	0	0	logfile
✔	6L3T	0825	2021-04-02	2019-10-15	2.34	2.41	2.27	2.4	0.011	1.07	0.0	0.05	16.88	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.59	0.0	0.03	16.28	0.00	1.929	2.64	1.41	0.8	99.2	0.0	2.99	3.48	0.67	0.86	4.09	19722	1206	18	0	6	204	9588	logfile
✔	6X4S	22042	2021-04-01	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	10.94	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.68	0.0	0.03	14.15	0.00	2.130	11.41	0.00	1.5	98.5	0.0	4.49	1.89	0.73	0.77	1.67	5373	706	9	0	1	0	0	logfile
✔	6T90	10406	2021-04-02	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.46	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.005	0.58	0.0	0.03	26.19	0.00	2.129	7.86	0.00	1.6	98.4	0.0	2.66	2.95	0.86	0.87	2.91	13031	903	19	282	9	0	0	logfile
✔	6VPS	21316	2021-04-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.49	0.0	0.03	18.34	0.00	2.371	4.47	0.00	6.9	93.1	0.0	-3.64	1.18	0.47	0.87	6.81	2736	279	9	0	0	0	0	logfile
✔	6T79	10390	2021-04-02	2019-10-21	3.2	3.08	3.18	3.1	0.006	0.85	0.0	0.05	28.26	0.01	2.178	5.33	0.00	2.0	98.0	0.0	-3.23	0.73	0.78	2.49	3.0	0.003	0.63	0.0	0.03	28.86	0.00	2.180	9.03	0.16	1.4	98.6	0.0	1.20	1.18	0.75	0.80	2.56	12121	776	10	290	0	0	0	logfile
✔	6YoV	10864	2021-04-02	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.21	0.01	2.395	1.39	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.9	0.003	0.59	0.0	0.03	25.57	0.00	2.197	9.47	0.00	1.5	98.5	0.0	3.00	1.27	0.89	0.85	1.89	12298	898	18	262	8	0	0	logfile
✔	6XQN	22290	2021-04-01	2020-07-09	3.3	3.76	—	3.7	0.005	0.67	1.0	0.04	14.56	0.00	1.922	7.08	2.87	2.5	97.5	0.0	0.13	0.65	0.69	1.45	3.7	0.003	0.57	0.0	0.03	13.81	0.00	2.207	5.75	0.00	1.8	98.2	0.0	3.56	1.38	0.69	0.74	1.30	9433	1290	10	0	1	0	0	logfile

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