Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XZB	10657	2022-05-19	2020-02-03	2.54	3.99	—	3.8	0.008	0.64	1.0	0.04	14.45	0.02	0.178	7.12	2.93	3.1	96.4	0.4	-1.96	0.75	0.71	2.59	3.8	0.003	0.71	0.0	0.03	15.34	0.01	1.204	12.81	3.47	3.8	96.0	0.1	-0.17	1.05	0.72	0.86	1.99	145650	5732	55	4692	1	0	0	logfile
✔	7D4Q	30576	2022-05-15	2020-09-24	2.74	2.99	2.80	3.0	0.009	0.78	0.0	0.04	12.13	0.00	2.254	6.42	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.003	0.48	0.0	0.03	15.53	0.00	2.196	6.27	1.13	1.4	98.6	0.0	2.53	0.44	0.69	0.87	3.86	22388	2672	8	0	24	0	0	logfile
✔	7BYM	30245	2022-05-14	2020-04-23	3.1	3.49	—	3.6	0.009	1.26	0.0	0.05	18.86	0.01	1.997	23.20	8.67	1.4	98.4	0.2	-0.33	0.46	0.48	1.34	3.5	0.003	0.61	0.0	0.03	17.05	0.00	2.168	9.93	0.24	1.1	98.8	0.1	2.58	0.92	0.55	0.74	1.47	16411	2000	16	0	11	4	0	logfile
✔	7K61	22686	2022-05-14	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.29	0.00	2.130	6.03	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.004	0.57	0.0	0.03	27.87	0.00	2.129	7.81	1.25	2.1	97.9	0.0	2.03	0.36	0.86	0.88	3.49	17723	1222	12	394	0	0	0	logfile
✔	7D60	30586	2022-05-15	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.44	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.59	0.0	0.03	17.57	0.00	2.200	4.01	1.79	2.5	97.5	0.0	1.45	0.54	0.69	0.83	2.00	26664	3168	22	0	55	0	0	logfile
✔	7AGX	11780	2022-05-18	2020-09-23	3.6	3.61	3.52	3.6	0.007	0.80	0.0	0.05	12.34	0.01	1.903	2.72	0.08	1.1	98.9	0.0	-2.48	0.42	0.79	3.60	3.6	0.003	0.58	0.0	0.03	15.52	0.00	1.968	6.39	0.38	2.0	98.0	0.0	2.36	0.93	0.42	0.79	2.05	47749	3031	33	0	0	0	24089	logfile
✔	7KWG	23052	2022-05-18	2020-11-30	3.75	3.89	—	3.8	0.009	1.43	1.0	0.07	17.12	0.01	2.227	5.50	2.86	10.7	88.8	0.4	-5.79	0.80	0.82	2.01	3.8	0.005	0.70	0.0	0.03	16.54	0.01	1.696	17.09	0.26	8.5	91.3	0.2	-2.30	1.28	0.79	0.80	1.59	51870	2251	21	1584	0	0	0	logfile
✔	7C0M	30267	2022-05-16	2020-05-01	3.9	4.76	—	3.8	0.011	0.83	0.0	0.05	27.43	0.00	2.189	13.43	0.73	5.5	94.5	0.0	-1.85	0.76	0.57	1.06	3.8	0.003	0.62	0.0	0.03	27.39	0.00	2.134	12.79	0.10	3.5	96.5	0.0	2.01	0.67	0.88	0.76	0.73	29816	2234	24	580	2	0	0	logfile
✔	6Y5D	10694	2022-05-16	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.87	0.01	2.251	1.76	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	4.0	0.003	0.61	0.0	0.03	26.23	0.00	1.921	12.91	0.00	2.4	97.6	0.0	1.11	1.25	0.88	0.81	—	30372	2218	31	612	11	0	0	logfile
✔	6Y5E	10695	2022-05-13	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.82	0.01	2.429	1.10	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.003	0.59	0.0	0.03	26.11	0.00	2.061	8.19	0.31	1.8	98.2	0.0	1.99	0.64	0.84	0.84	2.42	15292	1120	18	306	9	0	0	logfile
✔	7KDT	22829	2022-05-12	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	7JGG	22326	2022-05-12	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.83	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6K3o	9910	2022-05-16	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.77	0.82	2.46	31508	3790	48	0	36	0	0	logfile
✔	7DBP	30161	2022-05-13	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.004	0.63	0.0	0.03	30.20	0.00	2.194	24.63	0.00	3.2	96.8	0.0	1.13	2.52	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	7K63	22687	2022-05-14	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	7.07	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.58	0.0	0.03	27.49	0.00	2.199	8.15	0.18	2.8	97.2	0.0	1.76	0.41	0.78	0.83	2.87	18330	1298	13	394	0	0	0	logfile
✔	7LCJ	23275	2022-05-12	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.73	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.48	0.0	0.03	15.51	0.00	2.257	4.36	0.58	1.8	98.2	0.0	1.56	1.69	0.49	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	6SWA	10321	2022-05-17	2019-09-20	3.1	3.53	—	3.4	0.002	0.45	0.0	0.03	13.70	0.00	1.115	10.87	0.43	4.2	95.6	0.2	-2.39	0.68	0.83	2.07	3.4	0.004	0.61	0.0	0.03	15.68	0.00	1.822	12.44	0.66	5.7	94.3	0.0	-0.49	1.44	0.70	0.87	2.03	138160	6739	60	3888	250	0	0	logfile
✔	6XMF	22257	2022-05-12	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.82	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.78	0.20	9.8	90.2	0.0	-0.48	0.47	0.71	0.76	2.71	7382	627	3	109	1	0	0	logfile
✔	7CRo	30453	2022-05-15	2020-08-14	3.75	3.86	—	3.8	0.006	0.72	1.0	0.04	27.63	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.004	0.58	0.0	0.03	27.90	0.00	2.001	6.63	0.00	5.9	94.1	0.0	-2.20	0.50	0.79	0.84	1.28	14797	999	11	336	4	0	0	logfile
✔	6VWN	21422	2022-05-17	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.15	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	16.17	0.00	1.889	15.68	0.51	6.1	93.9	0.0	-1.23	1.21	0.84	0.86	1.05	140036	5341	57	4580	55	0	0	logfile

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