Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JoA	22409	2021-09-03	2020-08-06	3.3	3.05	—	3.2	0.009	0.78	0.0	0.04	26.00	0.01	2.206	6.07	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.003	0.56	0.0	0.03	26.30	0.00	2.272	6.25	0.10	1.4	98.6	0.0	1.86	4.79	0.82	0.86	1.51	14994	1125	11	290	1	0	0	logfile
✔	6L3U	0826	2021-09-04	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.95	0.0	0.05	17.70	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.003	0.58	0.0	0.03	16.90	0.00	1.958	1.55	1.31	0.4	99.6	0.0	2.52	0.94	0.64	0.85	2.97	19698	1206	18	0	12	174	9588	logfile
✔	6T90	10406	2021-09-03	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.46	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.003	0.59	0.0	0.03	26.52	0.00	2.046	9.11	0.40	1.5	98.5	0.0	2.74	2.94	0.86	0.87	2.52	13031	903	19	282	9	0	0	logfile
✔	6VPS	21316	2021-09-02	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	6ZTN	11421	2021-09-04	2020-07-20	3.9	3.77	3.87	3.5	0.012	1.16	0.0	0.07	16.39	0.02	0.156	8.31	5.85	6.1	93.1	0.7	-2.23	0.88	0.86	1.01	3.5	0.005	0.73	1.0	0.03	15.76	0.01	1.196	13.67	0.49	4.3	95.6	0.0	-0.23	0.83	0.87	0.85	0.84	174624	8895	80	4872	489	0	0	logfile
✔	6RJU	4906	2021-09-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	6WU3	21904	2021-09-03	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	8.95	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.003	0.57	0.0	0.03	15.83	0.00	2.013	9.25	0.57	5.3	94.7	0.0	1.19	1.86	0.62	0.87	2.88	13610	890	2	0	0	0	6936	logfile
✔	6N8L	0371	2021-09-05	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.55	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.003	0.60	1.0	0.03	16.12	0.00	2.068	9.25	0.35	7.8	92.1	0.1	-1.21	1.28	0.80	0.87	2.33	129926	6884	48	3479	210	0	0	logfile
✔	6WZ9	21971	2021-09-03	2020-05-13	2.8	2.45	—	3.0	0.006	0.74	0.0	0.04	29.10	0.01	2.015	6.87	2.27	1.7	98.3	0.0	0.07	0.73	0.70	2.55	3.0	0.004	0.62	0.0	0.03	29.30	0.00	2.219	10.23	3.57	2.5	97.5	0.0	1.98	0.52	0.74	0.72	2.14	11926	738	10	296	0	0	0	logfile
✔	6PC8	20299	2021-09-04	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.23	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.004	0.62	0.0	0.03	14.83	0.01	2.112	9.57	3.27	7.3	92.6	0.1	-1.60	1.26	0.73	0.88	3.30	72169	967	8	3015	1	0	0	logfile
✔	6VQi	21351	2021-09-02	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.58	0.0	0.03	4.23	0.00	2.229	3.52	0.00	5.7	94.2	0.1	2.19	1.39	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	5M6S	3451	2021-09-02	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.5	0.003	0.64	0.0	0.03	18.57	0.00	1.968	10.68	0.00	4.2	95.8	0.0	1.93	2.66	0.04	0.07	—	1593	98	1	0	0	0	793	logfile
✔	6RiU	4898	2021-09-02	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.66	0.0	0.03	16.44	0.00	2.076	12.47	0.66	3.9	96.1	0.0	-0.19	1.47	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	6PXM	20521	2021-09-05	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile
✔	5KPV	8280	2021-09-12	2016-07-05	4.1	5.32	4.22	4.1	0.008	1.18	5.0	0.09	14.56	0.01	2.074	34.14	0.66	13.5	80.3	6.2	-4.67	0.90	0.78	—	4.1	0.003	0.66	0.0	0.03	15.78	0.00	2.046	26.99	0.04	10.1	89.0	0.9	-1.80	1.81	0.94	0.89	—	154603	6623	59	4812	0	0	0	logfile
✔	6R86	4752	2021-09-05	2019-03-31	3.4	3.39	—	3.4	0.007	1.08	1.0	0.06	16.69	0.01	2.061	4.54	0.39	7.5	92.2	0.4	-4.05	0.77	0.84	3.15	3.4	0.002	0.59	0.0	0.03	16.35	0.00	1.961	10.56	0.42	6.7	93.2	0.1	-1.00	0.60	0.78	0.84	2.19	132446	7198	49	3539	41	0	0	logfile
✔	6NEQ	9358	2021-09-03	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.66	0.0	0.03	16.31	0.00	2.089	11.85	0.44	5.1	94.8	0.1	-0.21	2.11	0.85	0.84	1.26	65776	5509	32	952	147	0	0	logfile
✔	6V3D	21033	2021-09-06	2019-11-25	2.95	3.39	—	3.2	0.002	0.49	0.0	0.03	14.48	0.01	1.698	5.90	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.003	0.59	0.0	0.03	15.78	0.01	1.926	7.28	3.13	3.5	96.4	0.1	-0.57	1.19	0.86	0.89	2.44	89040	3117	45	3007	108	231	0	logfile
✔	5ADY	3133	2021-09-06	2015-08-25	4.5	4.75	—	4.5	0.011	1.27	0.0	0.06	18.75	0.01	1.391	57.38	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	4.5	0.002	0.61	0.0	0.03	16.55	0.00	2.004	18.08	0.00	9.5	89.4	1.1	-2.56	2.03	0.86	0.83	—	97364	4197	35	3020	2	0	0	logfile
✔	6SE6	10152	2021-09-03	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.65	0.0	0.03	28.64	0.00	2.070	13.64	1.25	2.1	97.9	0.0	1.50	0.61	0.86	0.84	1.38	12068	771	11	290	0	0	0	logfile

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