Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WB0	32391	2023-04-21	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.58	0.0	0.03	19.27	0.00	2.184	8.33	0.00	4.3	95.6	0.1	0.39	1.06	0.71	0.77	1.00	10096	797	4	175	0	0	0	logfile
✔	6o1D	0586	2023-04-22	2019-02-19	3.395	3.57	—	3.5	0.010	0.95	1.0	0.05	28.08	0.01	2.317	2.17	0.00	3.4	96.6	0.0	-4.72	0.79	0.87	4.13	3.5	0.003	0.57	0.0	0.03	27.97	0.00	2.190	7.68	0.16	2.3	97.7	0.0	0.33	0.54	0.79	0.88	2.73	11982	761	10	290	0	0	0	logfile
✔	7N0K	24107	2023-04-20	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.61	0.0	0.03	19.19	0.00	2.266	8.55	0.93	2.3	97.7	0.0	3.43	0.71	0.60	0.75	0.87	5154	626	2	0	0	0	0	logfile
✔	7Q49	13799	2023-04-21	2021-10-29	3.72	4.35	3.97	4.2	0.008	1.08	0.0	0.06	13.93	0.01	1.995	6.54	0.19	2.9	97.1	0.0	-1.50	0.67	0.70	2.02	4.2	0.003	0.62	0.0	0.03	16.57	0.00	1.930	7.41	0.38	3.4	96.6	0.0	1.29	0.92	0.66	0.67	1.19	10124	616	8	0	26	1	4788	logfile
✔	7K60	22685	2023-04-25	2020-09-17	3.12	3.33	—	3.2	0.004	0.64	0.0	0.04	26.72	0.00	2.175	9.32	0.09	2.0	98.0	0.0	0.43	0.74	0.73	1.70	3.2	0.003	0.61	0.0	0.03	27.37	0.00	2.105	10.67	0.36	2.8	97.2	0.0	1.07	0.54	0.76	0.77	1.59	18330	1298	13	394	0	0	0	logfile
✔	7TRF	26088	2023-04-22	2022-01-28	3.7	4.03	—	3.6	0.005	0.74	0.0	0.05	16.37	0.00	2.206	7.56	0.10	4.6	95.3	0.1	-0.55	0.83	0.81	1.72	3.6	0.002	0.55	0.0	0.03	16.65	0.00	2.205	6.85	0.10	3.0	97.0	0.0	1.30	0.66	0.83	0.82	1.63	13581	1106	5	224	0	0	0	logfile
✔	6VAK	21141	2023-04-26	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.002	0.58	0.0	0.03	16.38	0.00	2.190	5.71	0.72	5.9	94.1	0.0	2.31	0.55	0.70	0.82	2.80	22781	2992	11	0	0	0	0	logfile
✔	7TRE	26087	2023-04-22	2022-01-28	3.5	3.56	—	3.5	0.006	0.77	0.0	0.05	16.75	0.01	2.188	7.45	0.11	6.4	93.6	0.0	-0.75	0.77	0.77	2.23	3.5	0.004	0.59	0.0	0.03	17.07	0.00	2.219	7.53	0.53	4.1	95.9	0.0	0.60	0.73	0.78	0.83	2.14	13411	1086	4	224	0	0	0	logfile
✔	7V90	31806	2023-04-22	2021-08-24	3.5	3.21	3.42	3.5	0.005	0.73	3.0	0.04	26.19	0.00	2.219	8.45	4.01	4.7	94.8	0.5	-0.16	0.66	0.78	2.00	3.4	0.003	0.54	0.0	0.03	27.54	0.00	2.295	6.73	0.15	3.3	96.7	0.0	2.43	1.13	0.72	0.84	2.39	12148	781	10	290	0	0	0	logfile
✔	7LPC	23476	2023-04-23	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	7MVV	24057	2023-04-27	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	7XQ9	33391	2023-04-25	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.51	0.0	0.03	15.61	0.00	2.205	4.12	0.14	2.2	97.8	0.0	3.52	0.53	0.54	0.83	2.53	19632	2412	12	0	0	0	0	logfile
✔	6E0P	8949	2023-04-23	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.61	0.0	0.03	26.81	0.00	2.163	7.99	1.17	4.0	96.0	0.0	1.43	0.51	0.79	0.87	3.29	15567	1220	12	290	0	0	0	logfile
✔	6SXo	10344	2023-04-23	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.60	0.0	0.03	16.58	0.00	2.112	10.83	0.70	3.9	96.1	0.0	-1.17	0.66	0.26	0.77	1.97	14894	973	8	326	0	0	0	logfile
✔	6PX1	20516	2023-04-22	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.56	0.0	0.03	28.54	0.00	2.105	9.02	0.00	1.8	98.2	0.0	2.61	1.13	0.79	0.84	2.47	11937	752	10	290	0	0	0	logfile
✔	7K5X	22683	2023-04-25	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.1	0.004	0.59	0.0	0.03	27.56	0.00	2.215	6.81	1.91	2.4	97.6	0.0	1.63	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	6JYL	9718	2023-04-23	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.61	0.00	1.434	7.64	0.19	4.1	95.9	0.0	0.80	0.55	0.90	0.88	1.97	16136	1265	11	292	3	0	0	logfile
✔	7BG9	12174	2023-04-23	2021-01-06	3.8	3.88	—	3.7	0.013	1.64	6.0	0.11	17.68	0.01	1.518	7.91	0.75	12.0	86.5	1.6	-5.05	0.81	0.82	2.36	3.6	0.002	0.66	0.0	0.03	17.72	0.01	2.055	9.99	0.11	6.2	93.8	0.0	-0.56	1.80	0.80	0.78	1.65	14233	1085	5	262	0	0	0	logfile
✔	7YoJ	33983	2023-04-22	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	20.71	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.65	0.0	0.03	20.44	0.00	2.094	13.72	0.27	5.3	94.7	0.0	0.21	1.01	0.77	0.81	1.68	11545	867	4	216	0	0	0	logfile
✔	5A6E	3062	2023-04-22	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile

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