Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YW7	10960	2022-07-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.82	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6E9Y	9020	2022-07-03	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.06	0.00	2.036	9.37	0.00	1.4	98.6	0.0	2.12	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6PPK	20441	2022-07-05	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	20.24	0.01	1.150	22.66	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.003	0.65	0.0	0.03	18.90	0.01	2.063	20.99	0.00	8.3	91.7	0.0	-1.98	1.60	0.88	0.83	—	80451	2684	24	2770	1	0	0	logfile
✔	6ME0	9105	2022-07-05	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.75	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.004	0.64	0.0	0.03	17.42	0.00	1.866	18.37	0.28	12.7	87.3	0.0	-2.32	1.22	0.89	0.81	1.77	21539	414	4	845	33	0	0	logfile
✔	6NoG	0468	2022-07-04	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.31	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.003	0.62	0.0	0.03	26.64	0.00	2.178	11.53	0.74	2.2	97.8	0.0	1.66	1.77	0.86	0.85	0.47	14929	1124	12	292	0	0	0	logfile
✔	6oFG	20045	2022-07-03	2019-03-29	2.9	3.01	—	3.0	0.008	0.75	0.0	0.04	10.04	0.01	2.263	5.31	0.00	3.9	96.1	0.0	-6.09	0.65	0.85	4.64	3.0	0.003	0.56	0.0	0.03	14.55	0.00	2.087	7.57	3.33	3.3	96.7	0.0	4.82	0.54	0.66	0.87	3.24	10980	1404	18	0	0	0	0	logfile
✔	6NQA	0480	2022-07-04	2019-01-19	3.54	3.64	4.03	3.6	0.007	0.86	0.0	0.05	25.43	0.01	2.283	4.11	0.40	5.8	94.2	0.0	-4.04	0.76	0.81	1.45	3.6	0.006	0.83	0.0	0.03	26.30	0.01	2.142	7.55	0.20	3.2	96.8	0.0	0.13	1.29	0.79	0.83	1.50	15322	1164	13	292	1	0	0	logfile
✔	6MHX	9121	2022-07-06	2018-09-18	4.0	4.20	3.97	4.1	0.004	0.67	0.0	0.04	7.56	0.00	2.077	6.96	0.30	3.1	96.9	0.0	-2.52	0.77	0.76	—	4.0	0.003	0.54	0.0	0.03	12.08	0.00	1.951	10.47	0.00	5.2	94.8	0.0	2.22	0.98	0.78	0.78	—	31612	2436	4	0	0	0	14648	logfile
✔	5XYM	6789	2022-07-05	2017-07-09	3.08	3.42	—	3.4	0.006	1.01	7.0	0.10	16.02	0.00	1.297	4.10	2.56	7.8	89.6	2.5	-3.59	0.66	0.78	3.19	3.4	0.004	0.64	1.0	0.03	15.42	0.01	1.114	8.19	0.12	7.8	91.2	1.1	-1.59	1.41	0.77	0.85	2.41	84069	3122	32	2781	146	0	0	logfile
✔	6E9Z	9021	2022-07-06	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.25	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.62	0.0	0.03	15.82	0.00	1.876	8.16	0.12	2.7	97.3	0.0	2.47	1.91	0.57	0.81	1.19	32652	2025	9	0	0	0	16830	logfile
✔	6R0C	4692	2022-07-03	2019-03-12	4.2	4.33	4.09	4.2	0.008	0.86	0.0	0.05	27.85	0.01	1.900	5.06	0.00	3.1	96.9	0.0	-2.35	0.88	0.85	—	4.2	0.004	0.64	0.0	0.03	28.11	0.00	2.097	10.49	0.00	4.0	96.0	0.0	1.80	0.80	0.88	0.85	—	11737	747	11	284	1	0	0	logfile
✔	6TYi	20583	2022-07-03	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.37	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.002	0.52	0.0	0.03	17.16	0.00	2.221	6.27	0.11	2.8	97.2	0.0	3.28	1.18	0.71	0.82	1.28	9184	1186	11	0	4	0	0	logfile
✔	6MUP	9251	2022-07-04	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.79	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.003	0.68	0.0	0.03	26.66	0.00	2.120	11.57	0.20	7.9	92.1	0.0	-1.78	0.79	0.73	0.78	1.02	15803	1224	14	294	0	0	0	logfile
✔	6S01	10069	2022-07-03	2019-06-13	3.2	3.27	3.17	3.2	0.008	0.72	0.0	0.04	26.33	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.74	0.77	3.18	3.2	0.003	0.61	0.0	0.03	27.89	0.01	2.136	8.86	0.28	3.5	96.5	0.0	0.77	0.50	0.82	0.85	2.56	12959	853	11	300	0	0	0	logfile
✔	6MEC	9106	2022-07-04	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.007	0.87	0.0	0.03	17.73	0.00	1.934	16.07	0.00	8.6	91.4	0.0	-1.43	0.93	0.86	0.79	1.82	21276	414	5	832	52	0	0	logfile
✔	7UTN	26782	2022-07-03	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	18.54	0.00	2.166	8.21	0.29	1.3	98.7	0.0	0.88	0.28	0.82	0.84	3.73	8003	397	4	228	0	0	0	logfile
✔	7MVU	24056	2022-07-05	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.002	0.58	0.0	0.03	11.75	0.00	1.907	11.81	0.07	3.4	96.6	0.0	2.54	2.06	0.88	0.82	0.38	25645	1604	2	0	0	0	12841	logfile
✔	7MVV	24057	2022-07-05	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.003	0.52	0.0	0.03	11.12	0.00	2.027	7.30	0.07	3.4	96.6	0.0	2.79	0.96	0.90	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	7RQZ	24641	2022-07-06	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	17.06	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.003	0.45	0.0	0.03	16.29	0.00	2.107	5.24	0.00	3.8	96.2	0.0	1.03	0.28	0.59	0.75	1.54	32740	2128	8	0	20	0	15608	logfile
✔	7RQY	24640	2022-07-06	2021-08-08	3.04	3.28	—	3.3	0.011	0.94	0.0	0.05	15.62	0.00	2.205	7.95	0.00	2.7	97.3	0.0	-0.70	0.63	0.71	2.87	3.3	0.004	0.53	0.0	0.03	15.61	0.00	2.098	5.11	0.13	2.9	97.1	0.0	0.77	0.44	0.65	0.75	2.24	32052	2100	8	0	16	0	15388	logfile

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