Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YW7	10960	2022-12-11	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.82	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	7K61	22686	2022-12-14	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.29	0.00	2.130	6.03	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.005	0.57	0.0	0.03	27.83	0.00	2.108	7.37	0.87	2.1	97.9	0.0	2.01	0.35	0.86	0.88	3.53	17723	1222	12	394	0	0	0	logfile
✔	7K6Q	22692	2022-12-13	2020-09-21	3.1	3.63	3.21	3.5	0.006	0.78	0.0	0.04	24.92	0.01	2.108	3.43	0.00	2.3	97.7	0.0	1.37	0.81	0.80	3.65	3.5	0.004	0.55	0.0	0.03	26.28	0.00	2.166	10.16	0.10	3.2	96.8	0.0	1.12	0.36	0.81	0.83	2.73	15578	1229	13	292	1	0	0	logfile
✔	7BYN	30246	2022-12-13	2020-04-23	3.3	3.57	—	3.6	0.011	1.31	0.0	0.05	20.29	0.01	1.949	24.44	16.39	2.9	96.9	0.2	-0.58	0.48	0.52	0.70	3.6	0.003	0.64	0.0	0.03	17.62	0.00	2.166	8.76	0.24	1.4	98.6	0.1	2.08	1.49	0.58	0.79	0.67	16349	2000	12	0	8	0	0	logfile
✔	6ZHY	11221	2022-12-12	2020-06-24	3.0	3.57	2.97	3.1	0.005	0.91	0.0	0.06	27.29	0.01	2.316	3.82	0.21	1.5	98.5	0.0	0.65	0.90	0.87	4.24	3.1	0.004	0.62	0.0	0.03	29.07	0.00	2.155	8.39	2.77	1.6	98.4	0.0	3.28	0.88	0.91	0.90	3.14	8999	562	9	220	0	0	0	logfile
✔	7KDT	22829	2022-12-11	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.004	0.55	0.0	0.03	16.91	0.00	2.224	6.33	0.23	1.8	98.2	0.0	2.64	2.11	0.68	0.80	2.66	8064	505	2	0	0	0	4042	logfile
✔	7LCJ	23275	2022-12-11	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.49	0.0	0.03	15.44	0.00	2.251	4.36	0.87	1.8	98.2	0.0	1.55	1.70	0.48	0.81	2.84	3264	390	1	0	1	17	0	logfile
✔	7CCQ	30339	2022-12-13	2020-06-17	3.8	3.94	—	3.8	0.010	1.03	0.0	0.06	24.87	0.01	2.235	4.83	0.00	4.3	95.7	0.0	-2.89	0.84	0.83	2.29	3.8	0.003	0.64	0.0	0.03	26.79	0.00	2.078	13.51	0.42	4.0	96.0	0.0	1.38	1.28	0.83	0.83	1.37	14857	1101	11	294	0	0	0	logfile
✔	7KTQ	23026	2022-12-12	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.42	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.004	0.56	0.0	0.03	29.41	0.00	2.137	6.29	0.16	2.3	97.7	0.0	2.92	3.06	0.79	0.88	2.56	12745	752	10	331	0	0	0	logfile
✔	6W7N	21572	2022-12-21	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.005	0.64	0.0	0.03	15.40	0.00	2.136	11.29	0.69	11.6	88.1	0.3	-2.05	1.23	0.81	0.83	1.49	42287	1660	15	1372	0	0	0	logfile
✔	6ZHX	11220	2022-12-12	2020-06-24	2.5	3.01	2.20	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.72	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.59	0.0	0.03	28.61	0.00	2.138	5.45	1.38	0.9	99.1	0.0	2.81	0.45	0.89	0.92	4.64	12313	784	22	290	0	146	0	logfile
✔	7K63	22687	2022-12-14	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	7.07	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.58	0.0	0.03	27.53	0.00	2.214	8.18	0.00	2.9	97.1	0.0	1.66	0.39	0.78	0.84	2.71	18330	1298	13	394	0	0	0	logfile
✔	6K3o	9910	2022-12-16	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.76	0.81	2.46	31508	3790	48	0	36	0	0	logfile
✔	7K60	22685	2022-12-14	2020-09-17	3.12	3.33	—	3.2	0.004	0.64	0.0	0.04	26.72	0.00	2.175	9.38	0.09	2.0	98.0	0.0	0.43	0.74	0.73	1.70	3.2	0.003	0.59	0.0	0.03	27.28	0.00	2.146	10.85	0.63	2.5	97.5	0.0	1.09	0.55	0.75	0.77	1.43	18330	1298	13	394	0	0	0	logfile
✔	7JGG	22326	2022-12-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.54	0.0	0.03	12.79	0.00	1.898	99.07	0.00	5.9	94.1	0.0	0.89	1.75	0.67	0.71	—	4210	506	1	0	0	0	28	logfile
✔	7K5Y	22684	2022-12-14	2020-09-17	2.76	3.18	—	3.1	0.004	0.65	0.0	0.04	27.13	0.00	2.108	7.06	0.00	1.4	98.6	0.0	1.74	0.77	0.81	4.49	3.1	0.004	0.56	0.0	0.03	27.54	0.00	2.150	6.64	1.37	2.0	98.0	0.0	2.04	1.13	0.78	0.85	3.89	18258	1297	13	394	0	0	0	logfile
✔	7CRo	30453	2022-12-15	2020-08-14	3.75	3.86	—	3.8	0.006	0.74	1.0	0.04	27.64	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.004	0.58	0.0	0.03	28.01	0.00	2.197	6.89	0.48	5.9	94.1	0.0	-2.62	0.49	0.79	0.84	1.24	14797	999	11	336	4	0	0	logfile
✔	6XMF	22257	2022-12-11	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.82	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.63	0.00	2.152	15.34	0.60	9.3	90.7	0.0	-0.42	0.47	0.72	0.77	2.82	7382	627	3	109	1	0	0	logfile
✔	7CRR	30457	2022-12-15	2020-08-14	3.48	3.61	—	3.5	0.007	0.75	0.0	0.04	27.67	0.00	2.037	12.56	1.56	10.2	89.8	0.0	-5.14	0.74	0.82	2.82	3.5	0.004	0.58	0.0	0.03	27.91	0.00	2.210	8.57	0.36	6.4	93.6	0.0	-1.62	0.42	0.78	0.87	2.41	14839	1002	11	336	4	0	0	logfile
✔	6PCT	20307	2022-12-14	2019-06-18	2.8	3.01	—	2.9	0.006	0.41	2.0	0.03	12.70	0.02	1.891	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.60	0.0	0.03	14.49	0.01	2.104	8.47	4.34	6.0	93.9	0.1	-0.86	0.93	0.67	0.88	4.41	72198	964	8	3015	1	0	0	logfile

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