Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N7P	24230	2023-11-13	2021-06-10	3.24	2.66	—	3.2	0.058	2.03	0.0	0.04	19.97	0.00	1.647	12.45	0.35	1.6	98.4	0.0	1.62	0.58	0.84	2.19	3.2	0.003	0.58	0.0	0.03	17.86	0.00	2.133	14.88	0.17	2.6	97.4	0.0	3.68	0.37	0.58	0.86	1.83	5400	626	4	0	2	0	0	logfile
✔	7LCJ	23275	2023-11-13	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7K60	22685	2023-11-17	2020-09-17	3.12	3.33	—	3.2	0.004	0.64	0.0	0.04	26.72	0.00	2.175	9.32	0.09	2.0	98.0	0.0	0.43	0.74	0.73	1.70	3.2	0.003	0.60	0.0	0.03	27.36	0.00	2.115	10.61	0.18	2.4	97.6	0.0	1.05	0.55	0.75	0.77	1.58	18330	1298	13	394	0	0	0	logfile
✔	7MVV	24057	2023-11-19	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	6NY3	8980	2023-11-15	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.64	0.0	0.03	19.92	0.00	2.225	9.85	0.00	14.6	85.3	0.1	-1.85	1.01	0.66	0.80	0.74	10214	794	4	164	121	0	0	logfile
✔	7TRF	26088	2023-11-15	2022-01-28	3.7	4.03	—	3.6	0.005	0.74	0.0	0.05	16.37	0.00	2.206	7.56	0.10	4.6	95.3	0.1	-0.55	0.83	0.81	1.72	3.6	0.003	0.58	0.0	0.03	16.71	0.00	2.159	7.56	0.31	3.5	96.5	0.0	0.91	0.64	0.83	0.83	1.73	13581	1106	5	224	0	0	0	logfile
✔	7V90	31806	2023-11-15	2021-08-24	3.5	3.21	3.42	3.5	0.005	0.73	3.0	0.04	26.19	0.00	2.219	8.45	4.01	4.7	94.8	0.5	-0.16	0.66	0.78	2.00	3.4	0.003	0.54	0.0	0.03	27.60	0.00	2.256	6.00	0.46	3.8	96.2	0.0	2.27	1.12	0.73	0.84	2.50	12148	781	10	290	0	0	0	logfile
✔	7LV8	23529	2023-11-15	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.58	0.0	0.03	27.68	0.00	2.243	9.22	0.33	2.7	97.3	0.0	2.29	0.56	0.70	0.79	1.18	10651	764	10	242	0	0	0	logfile
✔	7K5X	22683	2023-11-17	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.1	0.003	0.58	0.0	0.03	27.44	0.00	2.220	6.96	1.64	2.2	97.8	0.0	1.90	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	6E9E	9013	2023-11-14	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.5	0.002	0.53	0.0	0.03	13.96	0.00	2.230	5.71	0.13	1.9	98.1	0.0	0.69	1.10	0.78	0.88	3.53	8163	863	3	51	1	0	0	logfile
✔	7EA5	31039	2023-11-16	2021-03-06	3.3	3.36	—	3.3	0.004	0.68	0.0	0.04	24.96	0.01	2.319	2.08	0.00	2.0	98.0	0.0	-3.00	0.74	0.79	2.50	3.3	0.003	0.58	0.0	0.03	26.73	0.00	2.167	7.07	0.36	3.2	96.8	0.0	0.92	1.68	0.76	0.83	2.43	13770	975	11	290	4	0	0	logfile
✔	6JYL	9718	2023-11-16	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.47	0.00	1.427	7.57	0.19	4.2	95.8	0.0	1.01	0.56	0.90	0.88	1.98	16136	1265	11	292	3	0	0	logfile
✔	7YoJ	33983	2023-11-15	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	20.71	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.63	0.0	0.03	20.35	0.00	2.135	14.63	0.27	5.0	95.0	0.0	0.30	1.03	0.78	0.81	1.97	11545	867	4	216	0	0	0	logfile
✔	7CR0	30443	2023-11-14	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.59	0.0	0.03	15.47	0.00	2.219	7.51	0.12	3.4	96.6	0.0	2.81	0.56	0.57	0.81	2.63	8188	1004	4	0	0	0	0	logfile
✔	7K78	22696	2023-11-16	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.09	0.01	2.149	8.43	0.20	2.7	97.3	0.0	0.24	0.73	0.85	2.54	3.2	0.003	0.58	0.0	0.03	26.82	0.00	2.175	7.40	0.59	2.9	97.1	0.0	1.60	0.31	0.71	0.86	2.40	14125	1198	12	232	0	0	0	logfile
✔	8ET6	28586	2023-11-14	2022-10-16	3.57	3.92	3.77	3.9	0.003	0.53	0.0	0.04	11.62	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.004	0.59	0.0	0.03	15.13	0.00	1.948	8.58	0.00	5.5	94.5	0.0	1.04	1.37	0.51	0.72	1.53	8092	532	2	0	2	0	4007	logfile
✔	5A6E	3062	2023-11-15	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	7K63	22687	2023-11-17	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	6.92	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.57	0.0	0.03	27.45	0.00	2.220	7.85	0.36	2.9	97.1	0.0	1.68	0.39	0.78	0.84	2.76	18330	1298	13	394	0	0	0	logfile
✔	8iXJ	35793	2023-11-16	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.003	0.33	0.0	0.03	13.96	0.00	2.249	2.57	0.29	0.0	100.0	0.0	7.00	1.01	0.66	0.86	1.03	13760	1840	40	0	0	0	0	logfile
✔	6K43	9913	2023-11-21	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.72	0.0	0.03	18.20	0.00	2.172	5.80	0.36	3.5	96.5	0.0	4.18	0.82	0.76	0.81	1.59	31808	3840	48	0	36	0	0	logfile

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