Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RDC	4813	2021-12-01	2019-04-12	3.2	3.06	—	3.2	0.013	1.07	1.0	0.06	13.88	0.01	1.864	5.69	0.41	5.2	94.6	0.2	-5.20	0.72	0.84	3.50	3.2	0.004	0.65	0.0	0.04	15.33	0.00	1.905	9.29	0.34	3.9	96.0	0.1	0.01	1.15	0.75	0.87	2.67	53776	7103	44	0	11	28	0	logfile
✔	6RE5	4842	2021-12-01	2019-04-12	3.2	3.28	—	3.3	0.010	0.94	0.0	0.06	14.48	0.01	2.163	5.75	0.27	4.8	95.0	0.2	-3.94	0.72	0.85	2.85	3.3	0.003	0.57	0.0	0.04	15.83	0.00	1.978	9.21	0.21	3.3	96.6	0.1	0.38	0.47	0.72	0.86	2.18	53720	7099	37	0	11	0	0	logfile
✔	6HS7	0264	2021-12-01	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.004	0.77	0.0	0.04	14.09	0.00	2.097	11.41	0.05	8.5	91.5	0.0	-2.36	0.92	0.80	0.72	—	52890	6905	25	0	0	0	0	logfile
✔	6FU8	4319	2021-12-01	2018-02-26	3.2	4.42	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.22	0.60	-0.89	1364	82	1	0	0	0	711	logfile
✔	6RE0	4837	2021-12-01	2019-04-12	3.6	3.72	3.63	3.7	0.009	0.96	1.0	0.06	14.94	0.01	1.846	6.04	0.43	5.4	94.4	0.2	-4.22	0.64	0.75	1.61	3.7	0.005	0.76	0.0	0.04	16.54	0.00	1.926	12.86	0.41	4.4	95.4	0.1	-0.23	0.67	0.66	0.79	1.40	53720	7099	37	0	11	0	0	logfile
✔	6LN6	0925	2021-12-01	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.61	0.0	0.04	11.78	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.004	0.65	0.0	0.04	15.40	0.00	2.034	6.40	1.85	1.8	98.2	0.0	0.35	1.33	0.68	0.85	3.39	7836	1010	1	0	4	0	0	logfile
✔	6F1Y	4171	2021-12-01	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.25	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.6	0.004	0.88	0.0	0.04	15.64	0.00	2.238	16.59	0.49	9.8	90.2	0.0	-1.19	2.15	0.50	0.76	0.93	4316	472	2	0	111	0	0	logfile
✔	6Wi9	21683	2021-12-01	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.37	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.004	0.73	0.0	0.04	13.93	0.00	2.087	14.09	0.00	6.6	93.4	0.0	-0.58	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6WZG	21972	2021-12-01	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	5.95	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✔	6UVA	20906	2021-12-01	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	6T7A	10391	2021-12-02	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.75	0.0	0.04	26.72	0.00	2.144	15.79	0.47	1.9	98.1	0.0	2.15	1.75	0.87	0.85	1.33	10338	847	11	190	0	0	0	logfile
✔	6WHC	21671	2021-12-01	2020-04-07	3.4	3.86	3.36	3.7	0.004	0.79	0.0	0.05	14.51	0.01	2.238	6.32	0.00	4.0	96.0	0.0	-4.67	0.83	0.82	1.97	3.7	0.003	0.68	0.0	0.04	15.88	0.00	2.159	10.59	0.44	3.0	97.0	0.0	-0.33	1.03	0.82	0.83	1.67	8709	1126	6	0	0	0	0	logfile
✔	6V4U	21048	2021-12-01	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.003	0.72	0.0	0.04	13.40	0.01	2.190	11.46	0.20	11.9	88.1	0.0	-1.59	0.78	0.76	0.67	1.58	7074	1106	3	0	0	0	0	logfile
✔	6LN8	0927	2021-12-01	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.12	0.01	1.935	8.40	0.35	2.6	97.4	0.0	0.31	0.48	0.70	0.82	1.90	7739	1003	1	0	2	0	0	logfile
✔	6UWF	20922	2021-12-01	2019-11-05	3.08	3.26	—	3.3	0.008	1.07	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.002	0.56	0.0	0.04	15.13	0.00	2.263	7.03	0.31	3.1	96.9	0.0	1.21	1.11	0.67	0.85	2.41	3178	417	1	0	2	0	0	logfile
✔	6TKo	10515	2021-12-01	2019-11-28	3.3	3.40	3.22	3.6	0.005	0.51	0.0	0.04	12.62	0.00	2.079	2.87	0.23	1.0	99.0	0.0	-2.07	0.71	0.73	2.06	3.5	0.005	0.75	0.0	0.04	15.16	0.01	2.016	15.87	0.47	2.6	97.4	0.0	0.05	1.73	0.77	0.81	2.52	8085	1052	5	0	1	0	0	logfile
✔	6WJ3	21687	2021-12-01	2020-04-11	3.9	4.46	4.05	4.2	0.009	0.50	0.0	0.04	12.83	0.00	2.210	8.22	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.009	1.04	0.0	0.04	15.41	0.01	1.836	15.75	0.11	6.0	94.0	0.0	-0.67	1.72	0.86	0.78	1.14	8912	1168	10	1	1	0	0	logfile
✔	6RET	4856	2021-12-01	2019-04-12	4.3	4.36	4.35	4.3	0.006	0.95	0.0	0.06	15.02	0.01	1.680	8.22	0.41	6.0	93.9	0.1	-5.14	0.59	0.72	—	4.3	0.006	0.81	2.0	0.04	14.32	0.00	1.405	18.61	0.02	4.8	95.1	0.1	-1.00	0.71	0.59	0.74	—	53756	7104	37	0	11	0	0	logfile
✔	6SKK	10226	2021-12-02	2019-08-15	3.6	3.76	3.63	3.7	0.003	0.60	0.0	0.04	12.96	0.00	2.319	7.60	0.18	1.7	98.3	0.0	-1.14	0.70	0.75	1.70	3.7	0.014	1.15	0.0	0.04	17.00	0.01	1.614	15.82	0.36	2.8	97.2	0.0	0.92	0.70	0.71	0.77	1.53	10328	1320	6	0	0	0	0	logfile
✔	6RD9	4810	2021-12-01	2019-04-12	3.0	3.00	—	3.1	0.014	1.11	0.0	0.07	14.22	0.01	1.876	6.05	0.69	4.7	95.0	0.2	-5.13	0.71	0.84	3.64	3.1	0.004	0.66	0.0	0.04	15.96	0.00	1.860	9.74	1.79	3.7	96.2	0.1	0.26	0.51	0.76	0.86	2.88	53776	7103	41	0	11	28	0	logfile

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