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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N7P | 24230 | 2023-11-13 | 2021-06-10 | 3.24 | 2.66 | — | 3.2 | 0.058 | 2.03 | 0.0 | 0.04 | 19.97 | 0.00 | 1.647 | 12.45 | 0.35 | 1.6 | 98.4 | 0.0 | 1.62 | 0.58 | 0.84 | 2.19 | 3.2 | 0.003 | 0.58 | 0.0 | 0.03 | 17.86 | 0.00 | 2.133 | 14.88 | 0.17 | 2.6 | 97.4 | 0.0 | 3.68 | 0.37 | 0.58 | 0.86 | 1.83 | 5400 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7LCJ | 23275 | 2023-11-13 | 2021-01-11 | 2.82 | 3.02 | 2.78 | 3.1 | 0.011 | 1.19 | 3.0 | 0.08 | 13.36 | 0.01 | 2.216 | 8.89 | 1.16 | 3.9 | 96.1 | 0.0 | 0.54 | 0.46 | 0.80 | 2.75 | 3.1 | 0.002 | 0.50 | 0.0 | 0.03 | 15.46 | 0.00 | 2.255 | 4.21 | 1.45 | 2.1 | 97.9 | 0.0 | 1.41 | 1.70 | 0.48 | 0.82 | 2.84 | 3264 | 390 | 1 | 0 | 1 | 17 | 0 | logfile |
✔ | 7K60 | 22685 | 2023-11-17 | 2020-09-17 | 3.12 | 3.33 | — | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 26.72 | 0.00 | 2.175 | 9.32 | 0.09 | 2.0 | 98.0 | 0.0 | 0.43 | 0.74 | 0.73 | 1.70 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 27.36 | 0.00 | 2.115 | 10.61 | 0.18 | 2.4 | 97.6 | 0.0 | 1.05 | 0.55 | 0.75 | 0.77 | 1.58 | 18330 | 1298 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7MVV | 24057 | 2023-11-19 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.98 | 0.00 | 2.021 | 7.18 | 0.07 | 3.0 | 97.0 | 0.0 | 2.84 | 0.96 | 0.89 | 0.82 | 1.13 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✔ | 6NY3 | 8980 | 2023-11-15 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 19.98 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.64 | 0.0 | 0.03 | 19.92 | 0.00 | 2.225 | 9.85 | 0.00 | 14.6 | 85.3 | 0.1 | -1.85 | 1.01 | 0.66 | 0.80 | 0.74 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 7TRF | 26088 | 2023-11-15 | 2022-01-28 | 3.7 | 4.03 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 16.37 | 0.00 | 2.206 | 7.56 | 0.10 | 4.6 | 95.3 | 0.1 | -0.55 | 0.83 | 0.81 | 1.72 | 3.6 | 0.003 | 0.58 | 0.0 | 0.03 | 16.71 | 0.00 | 2.159 | 7.56 | 0.31 | 3.5 | 96.5 | 0.0 | 0.91 | 0.64 | 0.83 | 0.83 | 1.73 | 13581 | 1106 | 5 | 224 | 0 | 0 | 0 | logfile |
✔ | 7V90 | 31806 | 2023-11-15 | 2021-08-24 | 3.5 | 3.21 | 3.42 | 3.5 | 0.005 | 0.73 | 3.0 | 0.04 | 26.19 | 0.00 | 2.219 | 8.45 | 4.01 | 4.7 | 94.8 | 0.5 | -0.16 | 0.66 | 0.78 | 2.00 | 3.4 | 0.003 | 0.54 | 0.0 | 0.03 | 27.60 | 0.00 | 2.256 | 6.00 | 0.46 | 3.8 | 96.2 | 0.0 | 2.27 | 1.12 | 0.73 | 0.84 | 2.50 | 12148 | 781 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2023-11-15 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.28 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.58 | 0.0 | 0.03 | 27.68 | 0.00 | 2.243 | 9.22 | 0.33 | 2.7 | 97.3 | 0.0 | 2.29 | 0.56 | 0.70 | 0.79 | 1.18 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7K5X | 22683 | 2023-11-17 | 2020-09-17 | 2.93 | 3.28 | — | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 26.42 | 0.00 | 2.211 | 5.79 | 0.09 | 2.2 | 97.8 | 0.0 | 1.31 | 0.76 | 0.82 | 3.15 | 3.1 | 0.003 | 0.58 | 0.0 | 0.03 | 27.44 | 0.00 | 2.220 | 6.96 | 1.64 | 2.2 | 97.8 | 0.0 | 1.90 | 1.40 | 0.79 | 0.86 | 2.34 | 18291 | 1296 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 6E9E | 9013 | 2023-11-14 | 2018-08-01 | 3.4 | 3.44 | 3.75 | 3.5 | 0.006 | 0.73 | 0.0 | 0.04 | 10.72 | 0.00 | 2.037 | 3.80 | 0.26 | 4.1 | 95.9 | 0.0 | -4.95 | 0.77 | 0.82 | 4.40 | 3.5 | 0.002 | 0.53 | 0.0 | 0.03 | 13.96 | 0.00 | 2.230 | 5.71 | 0.13 | 1.9 | 98.1 | 0.0 | 0.69 | 1.10 | 0.78 | 0.88 | 3.53 | 8163 | 863 | 3 | 51 | 1 | 0 | 0 | logfile |
✔ | 7EA5 | 31039 | 2023-11-16 | 2021-03-06 | 3.3 | 3.36 | — | 3.3 | 0.004 | 0.68 | 0.0 | 0.04 | 24.96 | 0.01 | 2.319 | 2.08 | 0.00 | 2.0 | 98.0 | 0.0 | -3.00 | 0.74 | 0.79 | 2.50 | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 26.73 | 0.00 | 2.167 | 7.07 | 0.36 | 3.2 | 96.8 | 0.0 | 0.92 | 1.68 | 0.76 | 0.83 | 2.43 | 13770 | 975 | 11 | 290 | 4 | 0 | 0 | logfile |
✔ | 6JYL | 9718 | 2023-11-16 | 2019-04-26 | 3.37 | 4.00 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 24.45 | 0.01 | 2.086 | 2.75 | 0.28 | 4.8 | 95.0 | 0.2 | -3.67 | 0.90 | 0.87 | 2.92 | 3.4 | 0.003 | 0.58 | 0.0 | 0.03 | 24.47 | 0.00 | 1.427 | 7.57 | 0.19 | 4.2 | 95.8 | 0.0 | 1.01 | 0.56 | 0.90 | 0.88 | 1.98 | 16136 | 1265 | 11 | 292 | 3 | 0 | 0 | logfile |
✔ | 7YoJ | 33983 | 2023-11-15 | 2022-08-01 | 3.36 | 3.79 | 3.58 | 3.7 | 0.005 | 0.87 | 0.0 | 0.05 | 20.71 | 0.01 | 2.304 | 7.98 | 2.19 | 5.9 | 93.6 | 0.5 | -2.03 | 0.77 | 0.77 | 1.75 | 3.6 | 0.003 | 0.63 | 0.0 | 0.03 | 20.35 | 0.00 | 2.135 | 14.63 | 0.27 | 5.0 | 95.0 | 0.0 | 0.30 | 1.03 | 0.78 | 0.81 | 1.97 | 11545 | 867 | 4 | 216 | 0 | 0 | 0 | logfile |
✔ | 7CR0 | 30443 | 2023-11-14 | 2020-08-12 | 3.1 | 3.35 | — | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 14.38 | 0.00 | 2.212 | 5.87 | 0.00 | 4.0 | 96.0 | 0.0 | -4.99 | 0.58 | 0.82 | 3.75 | 3.4 | 0.003 | 0.59 | 0.0 | 0.03 | 15.47 | 0.00 | 2.219 | 7.51 | 0.12 | 3.4 | 96.6 | 0.0 | 2.81 | 0.56 | 0.57 | 0.81 | 2.63 | 8188 | 1004 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K78 | 22696 | 2023-11-16 | 2020-09-22 | 3.1 | 3.20 | — | 3.2 | 0.004 | 0.69 | 0.0 | 0.04 | 27.09 | 0.01 | 2.149 | 8.43 | 0.20 | 2.7 | 97.3 | 0.0 | 0.24 | 0.73 | 0.85 | 2.54 | 3.2 | 0.003 | 0.58 | 0.0 | 0.03 | 26.82 | 0.00 | 2.175 | 7.40 | 0.59 | 2.9 | 97.1 | 0.0 | 1.60 | 0.31 | 0.71 | 0.86 | 2.40 | 14125 | 1198 | 12 | 232 | 0 | 0 | 0 | logfile |
✔ | 8ET6 | 28586 | 2023-11-14 | 2022-10-16 | 3.57 | 3.92 | 3.77 | 3.9 | 0.003 | 0.53 | 0.0 | 0.04 | 11.62 | 0.00 | 1.831 | 5.02 | 0.47 | 3.6 | 96.4 | 0.0 | 0.54 | 0.52 | 0.71 | 1.69 | 3.9 | 0.004 | 0.59 | 0.0 | 0.03 | 15.13 | 0.00 | 1.948 | 8.58 | 0.00 | 5.5 | 94.5 | 0.0 | 1.04 | 1.37 | 0.51 | 0.72 | 1.53 | 8092 | 532 | 2 | 0 | 2 | 0 | 4007 | logfile |
✔ | 5A6E | 3062 | 2023-11-15 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.004 | 0.60 | 0.0 | 0.03 | 10.41 | 0.00 | 2.080 | 11.78 | 0.00 | 5.3 | 94.7 | 0.0 | -0.72 | 1.45 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 7K63 | 22687 | 2023-11-17 | 2020-09-18 | 3.03 | 3.30 | — | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 26.88 | 0.00 | 2.158 | 6.92 | 0.09 | 2.0 | 98.0 | 0.0 | 0.98 | 0.76 | 0.80 | 3.33 | 3.2 | 0.003 | 0.57 | 0.0 | 0.03 | 27.45 | 0.00 | 2.220 | 7.85 | 0.36 | 2.9 | 97.1 | 0.0 | 1.68 | 0.39 | 0.78 | 0.84 | 2.76 | 18330 | 1298 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 8iXJ | 35793 | 2023-11-16 | 2023-04-01 | 3.1 | 3.03 | 3.07 | 3.1 | 0.012 | 1.45 | 0.0 | 0.09 | 10.47 | 0.00 | 2.412 | 3.04 | 0.00 | 0.0 | 100.0 | 0.0 | 3.48 | 0.67 | 0.86 | 2.90 | 3.1 | 0.003 | 0.33 | 0.0 | 0.03 | 13.96 | 0.00 | 2.249 | 2.57 | 0.29 | 0.0 | 100.0 | 0.0 | 7.00 | 1.01 | 0.66 | 0.86 | 1.03 | 13760 | 1840 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K43 | 9913 | 2023-11-21 | 2019-05-23 | 3.7 | 4.12 | — | 4.0 | 0.007 | 0.72 | 0.0 | 0.04 | 15.85 | 0.00 | 1.266 | 17.54 | 0.12 | 6.9 | 93.1 | 0.0 | -2.02 | 0.75 | 0.82 | 1.49 | 4.1 | 0.004 | 0.72 | 0.0 | 0.03 | 18.20 | 0.00 | 2.172 | 5.80 | 0.36 | 3.5 | 96.5 | 0.0 | 4.18 | 0.82 | 0.76 | 0.81 | 1.59 | 31808 | 3840 | 48 | 0 | 36 | 0 | 0 | logfile |