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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XNi | 33316 | 2024-03-21 | 2022-04-28 | 3.5 | 4.10 | 3.70 | 3.9 | 0.012 | 1.23 | 0.0 | 0.07 | 11.50 | 0.01 | 2.028 | 20.98 | 0.00 | 4.5 | 95.3 | 0.2 | -4.06 | 0.64 | 0.75 | 0.60 | 3.9 | 0.004 | 0.64 | 0.0 | 0.03 | 16.23 | 0.00 | 2.028 | 14.00 | 3.28 | 2.6 | 97.4 | 0.0 | 1.54 | 1.19 | 0.64 | 0.76 | 1.07 | 31368 | 1968 | 8 | 0 | 0 | 0 | 15652 | logfile |
✔ | 7F6V | 31482 | 2024-03-10 | 2021-06-25 | 3.66 | 4.27 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 13.91 | 0.00 | 2.356 | 10.62 | 0.00 | 6.8 | 93.2 | 0.0 | 0.27 | 0.60 | 0.78 | 1.08 | 4.2 | 0.003 | 0.59 | 0.0 | 0.03 | 16.99 | 0.00 | 2.257 | 9.31 | 1.76 | 3.9 | 96.1 | 0.0 | 4.64 | 0.80 | 0.61 | 0.78 | 0.79 | 5314 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8BGU | 16036 | 2024-03-10 | 2022-10-28 | 4.1 | 5.77 | 3.97 | 4.0 | 0.003 | 0.84 | 0.0 | 0.04 | 23.47 | 0.00 | 2.235 | 4.09 | 0.00 | 5.0 | 95.0 | 0.0 | -2.58 | 0.92 | 0.86 | — | 4.0 | 0.003 | 0.59 | 0.0 | 0.03 | 23.78 | 0.00 | 2.103 | 20.33 | 0.00 | 8.8 | 91.2 | 0.0 | -0.76 | 2.44 | 0.92 | 0.87 | — | 4779 | 447 | 5 | 121 | 1 | 0 | 0 | logfile |
✔ | 7o0W | 12681 | 2024-03-11 | 2021-03-27 | 2.47 | 2.42 | — | 2.3 | 0.018 | 4.34 | 0.0 | 0.06 | 22.75 | 0.01 | 2.010 | 1.98 | 0.28 | 1.4 | 98.6 | 0.0 | 1.25 | 0.82 | 0.86 | 5.37 | 2.3 | 0.003 | 1.66 | 0.0 | 0.03 | 19.23 | 0.00 | 1.961 | 7.59 | 1.08 | 0.9 | 99.1 | 0.0 | 3.95 | 0.49 | 0.83 | 0.88 | 3.97 | 56476 | 5076 | 236 | 0 | 320 | 406 | 0 | logfile |
✔ | 7o6E | 12738 | 2024-03-23 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.47 | 0.0 | 0.03 | 18.19 | 0.00 | 2.218 | 3.52 | 0.58 | 0.5 | 99.5 | 0.0 | 4.44 | 0.29 | 0.88 | 0.89 | 5.30 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✔ | 6QTZ | 4636 | 2024-03-16 | 2019-02-26 | 3.5 | 3.65 | — | 3.6 | 0.006 | 0.81 | 8.0 | 0.04 | 22.37 | 0.01 | 1.165 | 4.32 | 0.66 | 7.3 | 92.5 | 0.2 | -4.44 | 0.83 | 0.84 | 2.55 | 3.6 | 0.003 | 0.60 | 2.0 | 0.03 | 22.26 | 0.00 | 1.898 | 9.90 | 3.09 | 6.3 | 93.6 | 0.1 | -1.60 | 0.46 | 0.84 | 0.85 | 1.90 | 130259 | 7050 | 54 | 3423 | 217 | 0 | 0 | logfile |
✔ | 7NL0 | 12453 | 2024-03-15 | 2021-02-19 | 3.5 | 3.08 | — | 3.0 | 0.006 | 0.71 | 0.0 | 0.04 | 29.74 | 0.00 | 2.147 | 12.17 | 0.00 | 4.1 | 95.9 | 0.0 | 0.67 | 0.78 | 0.81 | 3.10 | 3.1 | 0.004 | 0.59 | 0.0 | 0.03 | 29.63 | 0.00 | 2.212 | 11.00 | 2.07 | 3.0 | 97.0 | 0.0 | 2.45 | 0.27 | 0.77 | 0.81 | 2.84 | 11363 | 755 | 10 | 262 | 0 | 0 | 0 | logfile |
✔ | 8CPV | 16787 | 2024-03-23 | 2023-03-03 | 1.76 | 1.73 | 1.80 | 1.7 | 0.006 | 0.91 | 0.0 | 0.07 | 14.41 | 0.01 | 2.182 | 2.58 | 0.00 | 1.0 | 99.0 | 0.0 | 2.15 | 0.78 | 0.84 | 8.93 | 1.7 | 0.002 | 0.49 | 0.0 | 0.03 | 14.99 | 0.00 | 2.274 | 3.00 | 0.00 | 1.8 | 98.2 | 0.0 | 4.87 | 1.19 | 0.81 | 0.87 | 8.51 | 35855 | 4152 | 72 | 0 | 38 | 1737 | 0 | logfile |
✔ | 7o0U | 12679 | 2024-03-11 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.018 | 4.37 | 0.0 | 0.06 | 22.73 | 0.01 | 2.121 | 1.73 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.3 | 0.003 | 1.70 | 0.0 | 0.03 | 19.15 | 0.00 | 1.824 | 7.37 | 1.56 | 0.9 | 99.1 | 0.0 | 4.13 | 2.04 | 0.84 | 0.89 | 4.31 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 7LV9 | 23530 | 2024-03-11 | 2021-02-24 | 4.5 | 7.82 | 4.59 | 4.4 | 0.003 | 0.64 | 0.0 | 0.04 | 27.07 | 0.00 | 1.334 | 3.02 | 0.00 | 3.2 | 96.8 | 0.0 | -3.35 | 0.82 | 0.66 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.03 | 28.57 | 0.00 | 2.194 | 16.76 | 0.00 | 2.5 | 97.5 | 0.0 | 1.84 | 1.51 | 0.90 | 0.84 | — | 8238 | 581 | 8 | 190 | 0 | 0 | 0 | logfile |
✔ | 6G4S | 4348 | 2024-03-25 | 2018-03-28 | 4.0 | 4.37 | — | 3.9 | 0.005 | 1.05 | 0.0 | 0.07 | 23.45 | 0.01 | 1.911 | 1.77 | 0.00 | 8.6 | 91.2 | 0.2 | -3.72 | 0.72 | 0.69 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.03 | 22.52 | 0.00 | 2.058 | 4.69 | 0.00 | 8.9 | 91.1 | 0.0 | -0.19 | 1.76 | 0.81 | 0.73 | — | 48967 | 5224 | 33 | 1613 | 768 | 0 | 0 | logfile |
✔ | 6GZQ | 0101 | 2024-03-21 | 2018-07-04 | 3.28 | 3.72 | — | 3.6 | 0.017 | 1.33 | 0.0 | 0.06 | 24.18 | 0.01 | 1.769 | 5.57 | 0.58 | 15.1 | 84.4 | 0.5 | -5.41 | 0.79 | 0.83 | 2.31 | 3.6 | 0.005 | 0.71 | 1.0 | 0.03 | 23.99 | 0.00 | 1.210 | 10.82 | 5.00 | 9.5 | 90.5 | 0.1 | -3.23 | 0.66 | 0.78 | 0.82 | 1.62 | 144138 | 5820 | 53 | 4540 | 0 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2024-03-10 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.66 | 0.0 | 0.03 | 17.85 | 0.00 | 2.198 | 6.54 | 2.34 | 3.2 | 96.8 | 0.0 | 1.40 | 0.77 | 0.27 | 0.78 | 2.51 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MoP | 23925 | 2024-03-23 | 2021-05-03 | 3.3 | 3.06 | 3.23 | 3.2 | 0.006 | 0.80 | 0.0 | 0.05 | 14.72 | 0.01 | 2.120 | 6.14 | 1.33 | 2.8 | 97.2 | 0.0 | -0.65 | 0.72 | 0.77 | 2.37 | 3.1 | 0.003 | 0.56 | 0.0 | 0.03 | 15.94 | 0.00 | 2.036 | 6.01 | 1.29 | 2.0 | 98.0 | 0.0 | 2.29 | 1.84 | 0.75 | 0.82 | 1.90 | 39049 | 2452 | 2 | 0 | 0 | 0 | 19681 | logfile |
✔ | 7VoJ | 32050 | 2024-03-11 | 2021-10-14 | 3.0 | 3.21 | — | 3.3 | 0.008 | 1.01 | 0.0 | 0.06 | 13.59 | 0.01 | 2.061 | 7.62 | 1.73 | 3.3 | 96.5 | 0.3 | -2.46 | 0.65 | 0.83 | 2.35 | 3.3 | 0.003 | 0.56 | 0.0 | 0.03 | 16.42 | 0.00 | 1.922 | 5.66 | 1.59 | 2.9 | 97.1 | 0.0 | 3.00 | 2.14 | 0.61 | 0.82 | 1.71 | 6318 | 800 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6o84 | 0650 | 2024-03-11 | 2019-03-08 | 3.92 | 4.04 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.01 | 0.00 | 2.350 | 2.97 | 0.64 | 4.9 | 95.1 | 0.0 | -5.68 | 0.60 | 0.82 | 2.21 | 4.0 | 0.002 | 0.67 | 0.0 | 0.03 | 15.99 | 0.00 | 2.163 | 8.82 | 2.56 | 5.9 | 94.1 | 0.0 | 1.76 | 1.26 | 0.60 | 0.81 | 2.24 | 6224 | 712 | 2 | 0 | 118 | 0 | 0 | logfile |
✔ | 8DEP | 27394 | 2024-03-10 | 2022-06-21 | 3.6 | 4.01 | 3.65 | 3.8 | 0.008 | 0.76 | 0.0 | 0.07 | 19.70 | 0.01 | 2.197 | 5.44 | 0.65 | 0.5 | 99.5 | 0.0 | 3.03 | 0.47 | 0.78 | 1.93 | 3.9 | 0.003 | 0.63 | 0.0 | 0.03 | 13.06 | 0.00 | 2.178 | 8.00 | 1.29 | 2.0 | 98.0 | 0.0 | 2.52 | 0.66 | 0.46 | 0.78 | 1.76 | 3223 | 398 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZLG | 11265 | 2024-03-22 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | 3.1 | 0.002 | 0.37 | 0.0 | 0.03 | 17.78 | 0.00 | 2.156 | 5.87 | 3.13 | 1.5 | 98.5 | 0.0 | 5.38 | 1.17 | 0.81 | 0.89 | 2.84 | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G4W | 4349 | 2024-03-25 | 2018-03-28 | 4.5 | 5.22 | — | 4.4 | 0.006 | 1.11 | 2.0 | 0.07 | 23.58 | 0.01 | 0.760 | 5.05 | 0.00 | 8.2 | 91.5 | 0.3 | -3.51 | 0.65 | 0.51 | — | 4.3 | 0.002 | 0.57 | 0.0 | 0.03 | 24.29 | 0.00 | 2.097 | 6.33 | 0.00 | 6.9 | 93.0 | 0.0 | 0.20 | 2.48 | 0.87 | 0.63 | — | 45223 | 4589 | 31 | 1563 | 768 | 0 | 0 | logfile |
✔ | 5WE6 | 8815 | 2024-03-01 | 2017-07-07 | 3.4 | 3.36 | 3.38 | 3.3 | 0.008 | 1.11 | 2.0 | 0.10 | 23.94 | 0.02 | 1.679 | 1.92 | 2.48 | 10.3 | 87.3 | 2.4 | -4.31 | 0.77 | 0.80 | 2.33 | 3.3 | 0.004 | 0.71 | 1.0 | 0.03 | 23.39 | 0.01 | 1.860 | 10.29 | 4.30 | 8.2 | 91.3 | 0.5 | -1.65 | 1.90 | 0.83 | 0.84 | 1.75 | 153233 | 6322 | 97 | 4801 | 671 | 153 | 0 | logfile |