Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YHP	33835	2022-12-11	2022-07-14	3.1	3.03	3.01	3.1	0.007	0.55	0.0	0.04	18.78	0.00	2.216	8.38	1.81	4.1	95.9	0.0	0.44	0.68	0.76	3.14	3.1	0.002	0.47	0.0	0.03	20.86	0.00	2.126	10.86	0.00	3.6	96.4	0.0	0.63	0.72	0.68	0.78	2.89	3815	374	4	38	1	0	0	logfile
✔	8DEP	27394	2022-12-11	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.60	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.66	0.0	0.03	16.82	0.00	2.206	9.44	0.65	2.0	98.0	0.0	2.04	0.68	0.46	0.77	1.53	3223	398	1	0	4	0	0	logfile
✔	7P3F	13179	2022-12-11	2021-07-07	3.31	3.46	3.33	3.4	0.009	1.32	6.0	0.08	25.23	0.01	2.242	7.35	1.59	4.3	95.7	0.0	-1.22	0.74	0.80	2.05	3.4	0.003	0.53	0.0	0.03	25.19	0.00	2.185	10.59	0.20	3.3	96.7	0.0	0.02	0.62	0.74	0.83	2.51	6878	588	10	100	12	0	0	logfile
✔	7RQW	24638	2022-12-18	2021-08-08	3.11	3.40	—	3.5	0.011	0.99	0.0	0.06	16.48	0.00	2.042	7.24	0.00	4.4	95.6	0.0	0.31	0.55	0.69	2.95	3.5	0.004	0.49	0.0	0.03	16.01	0.00	1.972	7.62	0.00	4.4	95.6	0.0	0.78	0.38	0.52	0.69	2.81	32984	2128	8	0	20	0	15804	logfile
✔	7QPC	14117	2022-12-12	2022-01-03	3.44	3.64	3.38	3.7	0.003	1.27	0.0	0.04	14.77	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.68	0.0	0.03	15.36	0.00	2.111	7.69	0.18	3.4	96.6	0.0	1.47	0.28	0.57	0.80	1.44	10830	654	6	0	4	62	5540	logfile
✔	7T37	25650	2022-12-14	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.07	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.003	0.52	0.0	0.03	14.25	0.00	2.292	6.10	0.05	2.9	97.1	0.0	1.20	0.29	0.69	0.82	1.92	20176	2476	8	0	8	0	0	logfile
✔	7TRD	26086	2022-12-12	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	16.47	0.00	2.206	7.55	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	3.3	0.004	0.56	0.0	0.03	16.59	0.00	2.155	5.80	0.12	4.1	95.9	0.0	1.09	0.40	0.80	0.85	2.50	12240	934	3	224	0	0	0	logfile
✔	7TAN	25777	2022-12-12	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.86	0.00	2.211	2.79	0.47	1.9	98.1	0.0	2.21	0.33	0.84	0.87	1.98	12119	768	12	294	0	0	0	logfile
✔	7TRF	26088	2022-12-13	2022-01-28	3.7	4.03	—	3.6	0.005	0.74	0.0	0.05	16.37	0.00	2.206	7.60	0.10	4.6	95.3	0.1	-0.55	0.83	0.81	1.72	3.6	0.002	0.55	0.0	0.03	16.66	0.00	2.183	7.48	0.21	3.6	96.4	0.0	1.16	0.66	0.83	0.82	1.68	13581	1106	5	224	0	0	0	logfile
✔	7S38	24819	2022-12-13	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.54	0.01	2.233	2.65	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.24	0.00	2.105	8.22	0.00	2.4	97.6	0.0	0.51	1.31	0.88	0.87	2.71	13987	1353	4	138	1	0	0	logfile
✔	7TRE	26087	2022-12-13	2022-01-28	3.5	3.56	—	3.5	0.006	0.77	0.0	0.05	16.75	0.01	2.188	7.57	0.11	6.4	93.6	0.0	-0.75	0.77	0.77	2.23	3.5	0.002	0.53	0.0	0.03	17.05	0.00	2.184	7.04	0.43	3.7	96.3	0.0	0.67	0.74	0.78	0.82	2.22	13411	1086	4	224	0	0	0	logfile
✔	7RZV	24779	2022-12-11	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7RZQ	24774	2022-12-11	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	7Q2Z	13786	2022-12-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.96	0.00	2.121	3.52	0.12	2.9	97.0	0.1	2.02	1.23	0.70	0.86	1.90	8258	902	4	46	0	0	0	logfile
✔	7RZT	24777	2022-12-11	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.83	3.03	2451	324	6	0	0	0	0	logfile
✔	7WDB	32436	2022-12-14	2021-12-21	2.4	2.54	—	2.6	0.016	1.47	0.0	0.05	14.91	0.01	2.275	6.62	0.84	0.8	99.2	0.0	2.67	0.78	0.91	4.31	2.6	0.002	0.47	0.0	0.03	15.91	0.00	2.199	5.31	1.35	0.8	99.2	0.0	2.85	1.05	0.76	0.91	4.33	22400	2660	8	0	28	0	0	logfile
✔	7QBi	13887	2022-12-11	2021-11-19	3.46	3.72	3.49	3.7	0.008	1.05	0.0	0.05	14.63	0.01	2.231	3.40	0.00	2.8	97.2	0.0	-1.45	0.59	0.76	2.29	3.7	0.003	0.61	0.0	0.03	15.81	0.00	2.170	12.29	0.66	2.0	98.0	0.0	2.37	1.21	0.59	0.80	1.85	4996	622	8	0	16	0	0	logfile
✔	7T38	25651	2022-12-14	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.29	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.53	0.0	0.03	15.47	0.00	2.252	5.73	0.24	3.8	96.2	0.0	1.61	1.56	0.70	0.82	1.30	19404	2432	4	0	0	0	0	logfile
✔	7RZR	24775	2022-12-11	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7V99	31811	2022-12-13	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	14.51	0.00	2.258	7.89	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.002	0.60	0.0	0.03	15.54	0.00	2.191	12.06	0.20	5.9	94.1	0.1	-0.07	1.36	0.82	0.75	0.68	14582	1170	5	249	0	0	0	logfile

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