Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YG4	33807	2023-04-20	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	3.3	0.002	0.57	0.0	0.03	17.05	0.00	2.235	6.89	0.00	3.3	96.7	0.0	2.29	0.36	0.75	0.81	0.84	7510	953	3	0	0	0	0	logfile
✔	7V9U	31827	2023-04-21	2021-08-26	3.12	3.31	—	3.2	0.004	0.63	0.0	0.04	22.35	0.01	2.180	10.84	0.00	6.2	93.8	0.0	-1.53	0.75	0.78	3.58	3.2	0.003	0.58	0.0	0.03	22.69	0.00	2.169	9.65	0.18	5.5	94.5	0.0	-0.74	1.23	0.76	0.80	3.38	9354	618	8	209	0	0	0	logfile
✔	6ZBD	11151	2023-04-25	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.97	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.002	0.50	0.0	0.03	15.08	0.00	2.000	5.02	0.27	1.5	98.5	0.0	3.93	2.62	0.86	0.80	1.77	19519	1159	4	0	0	0	9896	logfile
✔	6ZBG	11154	2023-04-25	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.48	0.0	0.03	15.23	0.00	2.139	4.51	0.09	0.8	99.2	0.0	4.37	1.86	0.85	0.79	1.51	19534	1160	4	0	0	0	9902	logfile
✔	8G8E	29846	2023-04-19	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.65	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.003	0.63	0.0	0.03	28.39	0.00	2.243	15.67	0.00	2.9	97.1	0.0	-0.23	1.84	0.91	0.85	—	2464	140	3	64	0	0	0	logfile
✔	8G8G	29850	2023-04-23	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	7F6V	31482	2023-04-20	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	14.14	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.65	0.0	0.03	17.58	0.00	2.249	9.40	0.18	4.4	95.6	0.0	4.28	0.84	0.60	0.77	0.75	5314	626	4	0	2	0	0	logfile
✔	6ZBF	11153	2023-04-25	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.34	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.003	0.49	0.0	0.03	15.23	0.00	1.930	5.09	0.00	1.1	98.9	0.0	4.10	2.84	0.85	0.78	1.36	19459	1156	4	0	0	0	9861	logfile
✔	6T90	10406	2023-04-22	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.40	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.004	0.59	0.0	0.03	26.53	0.00	2.050	6.29	0.40	1.4	98.6	0.0	3.02	2.93	0.86	0.87	2.63	13031	903	19	282	9	0	0	logfile
✔	7CRR	30457	2023-04-27	2020-08-14	3.48	3.61	—	3.5	0.007	0.75	0.0	0.04	27.67	0.00	2.037	12.56	1.56	10.2	89.8	0.0	-5.14	0.74	0.82	2.82	3.5	0.004	0.59	0.0	0.03	27.98	0.00	2.219	8.79	0.24	6.9	93.1	0.0	-1.80	0.41	0.78	0.87	2.38	14839	1002	11	336	4	0	0	logfile
✔	7CRo	30453	2023-04-27	2020-08-14	3.75	3.86	—	3.8	0.006	0.74	1.0	0.04	27.64	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.004	0.59	0.0	0.03	27.97	0.00	2.035	6.66	0.48	6.4	93.6	0.0	-2.39	0.50	0.79	0.84	1.39	14797	999	11	336	4	0	0	logfile
✔	6T93	10408	2023-04-22	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.74	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.68	0.0	0.03	28.03	0.00	2.203	11.73	0.95	3.0	97.0	0.0	2.52	2.06	0.87	0.87	1.78	12199	758	10	302	0	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	8CSZ	26976	2023-04-21	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.57	0.0	0.03	19.22	0.00	1.980	9.85	0.24	4.9	95.1	0.0	-0.14	1.12	0.84	0.88	3.57	8948	494	5	236	3	0	0	logfile
✔	7UTN	26782	2023-04-20	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	18.52	0.00	2.158	8.00	0.58	1.8	98.2	0.0	0.95	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	6ZBC	11150	2023-04-25	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.49	0.0	0.03	15.14	0.00	2.071	3.69	0.18	1.4	98.6	0.0	4.05	0.84	0.85	0.81	1.66	19534	1160	4	0	0	0	9902	logfile
✔	7DBP	30161	2023-04-22	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.66	0.0	0.03	30.47	0.00	2.147	27.18	0.00	3.7	96.3	0.0	0.77	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	7CR1	30444	2023-04-20	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile
✔	7XSN	33428	2023-04-20	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7RU6	24698	2023-04-20	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile

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