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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YHP | 33835 | 2022-12-11 | 2022-07-14 | 3.1 | 3.03 | 3.01 | 3.1 | 0.007 | 0.55 | 0.0 | 0.04 | 18.78 | 0.00 | 2.216 | 8.38 | 1.81 | 4.1 | 95.9 | 0.0 | 0.44 | 0.68 | 0.76 | 3.14 | 3.1 | 0.002 | 0.47 | 0.0 | 0.03 | 20.86 | 0.00 | 2.126 | 10.86 | 0.00 | 3.6 | 96.4 | 0.0 | 0.63 | 0.72 | 0.68 | 0.78 | 2.89 | 3815 | 374 | 4 | 38 | 1 | 0 | 0 | logfile |
✔ | 8DEP | 27394 | 2022-12-11 | 2022-06-21 | 3.6 | 4.01 | 3.65 | 3.8 | 0.008 | 0.76 | 0.0 | 0.07 | 13.59 | 0.01 | 2.197 | 5.60 | 0.65 | 0.5 | 99.5 | 0.0 | 3.03 | 0.47 | 0.78 | 1.93 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 16.82 | 0.00 | 2.206 | 9.44 | 0.65 | 2.0 | 98.0 | 0.0 | 2.04 | 0.68 | 0.46 | 0.77 | 1.53 | 3223 | 398 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7P3F | 13179 | 2022-12-11 | 2021-07-07 | 3.31 | 3.46 | 3.33 | 3.4 | 0.009 | 1.32 | 6.0 | 0.08 | 25.23 | 0.01 | 2.242 | 7.35 | 1.59 | 4.3 | 95.7 | 0.0 | -1.22 | 0.74 | 0.80 | 2.05 | 3.4 | 0.003 | 0.53 | 0.0 | 0.03 | 25.19 | 0.00 | 2.185 | 10.59 | 0.20 | 3.3 | 96.7 | 0.0 | 0.02 | 0.62 | 0.74 | 0.83 | 2.51 | 6878 | 588 | 10 | 100 | 12 | 0 | 0 | logfile |
✔ | 7RQW | 24638 | 2022-12-18 | 2021-08-08 | 3.11 | 3.40 | — | 3.5 | 0.011 | 0.99 | 0.0 | 0.06 | 16.48 | 0.00 | 2.042 | 7.24 | 0.00 | 4.4 | 95.6 | 0.0 | 0.31 | 0.55 | 0.69 | 2.95 | 3.5 | 0.004 | 0.49 | 0.0 | 0.03 | 16.01 | 0.00 | 1.972 | 7.62 | 0.00 | 4.4 | 95.6 | 0.0 | 0.78 | 0.38 | 0.52 | 0.69 | 2.81 | 32984 | 2128 | 8 | 0 | 20 | 0 | 15804 | logfile |
✔ | 7QPC | 14117 | 2022-12-12 | 2022-01-03 | 3.44 | 3.64 | 3.38 | 3.7 | 0.003 | 1.27 | 0.0 | 0.04 | 14.77 | 0.00 | 2.199 | 5.74 | 0.00 | 2.5 | 97.5 | 0.0 | 1.61 | 0.59 | 0.79 | 1.03 | 3.7 | 0.003 | 0.68 | 0.0 | 0.03 | 15.36 | 0.00 | 2.111 | 7.69 | 0.18 | 3.4 | 96.6 | 0.0 | 1.47 | 0.28 | 0.57 | 0.80 | 1.44 | 10830 | 654 | 6 | 0 | 4 | 62 | 5540 | logfile |
✔ | 7T37 | 25650 | 2022-12-14 | 2021-12-07 | 3.7 | 4.02 | — | 4.0 | 0.007 | 0.85 | 0.0 | 0.05 | 13.07 | 0.01 | 2.247 | 4.17 | 0.00 | 3.8 | 96.2 | 0.0 | -1.43 | 0.69 | 0.82 | 2.15 | 4.0 | 0.003 | 0.52 | 0.0 | 0.03 | 14.25 | 0.00 | 2.292 | 6.10 | 0.05 | 2.9 | 97.1 | 0.0 | 1.20 | 0.29 | 0.69 | 0.82 | 1.92 | 20176 | 2476 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7TRD | 26086 | 2022-12-12 | 2022-01-28 | 3.3 | 3.39 | — | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 16.47 | 0.00 | 2.206 | 7.55 | 0.12 | 4.3 | 95.7 | 0.0 | -0.10 | 0.79 | 0.84 | 2.70 | 3.3 | 0.004 | 0.56 | 0.0 | 0.03 | 16.59 | 0.00 | 2.155 | 5.80 | 0.12 | 4.1 | 95.9 | 0.0 | 1.09 | 0.40 | 0.80 | 0.85 | 2.50 | 12240 | 934 | 3 | 224 | 0 | 0 | 0 | logfile |
✔ | 7TAN | 25777 | 2022-12-12 | 2021-12-21 | 3.0 | 2.95 | — | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 27.32 | 0.00 | 2.287 | 3.25 | 0.00 | 2.8 | 97.2 | 0.0 | 2.18 | 0.82 | 0.85 | 2.22 | 3.1 | 0.004 | 0.52 | 0.0 | 0.03 | 27.86 | 0.00 | 2.211 | 2.79 | 0.47 | 1.9 | 98.1 | 0.0 | 2.21 | 0.33 | 0.84 | 0.87 | 1.98 | 12119 | 768 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 7TRF | 26088 | 2022-12-13 | 2022-01-28 | 3.7 | 4.03 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 16.37 | 0.00 | 2.206 | 7.60 | 0.10 | 4.6 | 95.3 | 0.1 | -0.55 | 0.83 | 0.81 | 1.72 | 3.6 | 0.002 | 0.55 | 0.0 | 0.03 | 16.66 | 0.00 | 2.183 | 7.48 | 0.21 | 3.6 | 96.4 | 0.0 | 1.16 | 0.66 | 0.83 | 0.82 | 1.68 | 13581 | 1106 | 5 | 224 | 0 | 0 | 0 | logfile |
✔ | 7S38 | 24819 | 2022-12-13 | 2021-09-04 | 3.3 | 3.17 | 3.25 | 3.1 | 0.008 | 0.99 | 0.0 | 0.05 | 15.54 | 0.01 | 2.233 | 2.65 | 0.08 | 4.2 | 95.8 | 0.0 | -1.38 | 0.86 | 0.83 | 3.03 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 17.24 | 0.00 | 2.105 | 8.22 | 0.00 | 2.4 | 97.6 | 0.0 | 0.51 | 1.31 | 0.88 | 0.87 | 2.71 | 13987 | 1353 | 4 | 138 | 1 | 0 | 0 | logfile |
✔ | 7TRE | 26087 | 2022-12-13 | 2022-01-28 | 3.5 | 3.56 | — | 3.5 | 0.006 | 0.77 | 0.0 | 0.05 | 16.75 | 0.01 | 2.188 | 7.57 | 0.11 | 6.4 | 93.6 | 0.0 | -0.75 | 0.77 | 0.77 | 2.23 | 3.5 | 0.002 | 0.53 | 0.0 | 0.03 | 17.05 | 0.00 | 2.184 | 7.04 | 0.43 | 3.7 | 96.3 | 0.0 | 0.67 | 0.74 | 0.78 | 0.82 | 2.22 | 13411 | 1086 | 4 | 224 | 0 | 0 | 0 | logfile |
✔ | 7RZV | 24779 | 2022-12-11 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.36 | 0.0 | 0.03 | 15.90 | 0.00 | 2.235 | 5.24 | 0.34 | 0.0 | 100.0 | 0.0 | 5.91 | 0.88 | 0.83 | 0.83 | 1.88 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZQ | 24774 | 2022-12-11 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.30 | 0.0 | 0.03 | 15.08 | 0.00 | 2.337 | 5.30 | 0.36 | 0.0 | 100.0 | 0.0 | 5.90 | 0.30 | 0.82 | 0.83 | 1.87 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q2Z | 13786 | 2022-12-12 | 2021-10-26 | 3.2 | 2.91 | 3.15 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 18.78 | 0.00 | 2.227 | 4.26 | 0.00 | 6.5 | 93.4 | 0.1 | -1.44 | 0.67 | 0.80 | 2.05 | 3.2 | 0.003 | 0.54 | 0.0 | 0.03 | 19.96 | 0.00 | 2.121 | 3.52 | 0.12 | 2.9 | 97.0 | 0.1 | 2.02 | 1.23 | 0.70 | 0.86 | 1.90 | 8258 | 902 | 4 | 46 | 0 | 0 | 0 | logfile |
✔ | 7RZT | 24777 | 2022-12-11 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.54 | 0.00 | 2.332 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.21 | 0.24 | 0.80 | 0.83 | 3.03 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WDB | 32436 | 2022-12-14 | 2021-12-21 | 2.4 | 2.54 | — | 2.6 | 0.016 | 1.47 | 0.0 | 0.05 | 14.91 | 0.01 | 2.275 | 6.62 | 0.84 | 0.8 | 99.2 | 0.0 | 2.67 | 0.78 | 0.91 | 4.31 | 2.6 | 0.002 | 0.47 | 0.0 | 0.03 | 15.91 | 0.00 | 2.199 | 5.31 | 1.35 | 0.8 | 99.2 | 0.0 | 2.85 | 1.05 | 0.76 | 0.91 | 4.33 | 22400 | 2660 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7QBi | 13887 | 2022-12-11 | 2021-11-19 | 3.46 | 3.72 | 3.49 | 3.7 | 0.008 | 1.05 | 0.0 | 0.05 | 14.63 | 0.01 | 2.231 | 3.40 | 0.00 | 2.8 | 97.2 | 0.0 | -1.45 | 0.59 | 0.76 | 2.29 | 3.7 | 0.003 | 0.61 | 0.0 | 0.03 | 15.81 | 0.00 | 2.170 | 12.29 | 0.66 | 2.0 | 98.0 | 0.0 | 2.37 | 1.21 | 0.59 | 0.80 | 1.85 | 4996 | 622 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7T38 | 25651 | 2022-12-14 | 2021-12-07 | 3.8 | 4.03 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.04 | 13.60 | 0.01 | 2.319 | 4.29 | 0.39 | 3.1 | 96.9 | 0.0 | -1.24 | 0.68 | 0.81 | 1.54 | 4.0 | 0.002 | 0.53 | 0.0 | 0.03 | 15.47 | 0.00 | 2.252 | 5.73 | 0.24 | 3.8 | 96.2 | 0.0 | 1.61 | 1.56 | 0.70 | 0.82 | 1.30 | 19404 | 2432 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZR | 24775 | 2022-12-11 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.003 | 0.35 | 0.0 | 0.03 | 15.28 | 0.00 | 2.325 | 4.84 | 0.35 | 0.0 | 100.0 | 0.0 | 6.56 | 0.32 | 0.81 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V99 | 31811 | 2022-12-13 | 2021-08-24 | 3.54 | 4.33 | — | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 14.51 | 0.00 | 2.258 | 7.89 | 0.10 | 5.9 | 94.1 | 0.1 | -3.21 | 0.79 | 0.68 | 0.93 | 3.3 | 0.002 | 0.60 | 0.0 | 0.03 | 15.54 | 0.00 | 2.191 | 12.06 | 0.20 | 5.9 | 94.1 | 0.1 | -0.07 | 1.36 | 0.82 | 0.75 | 0.68 | 14582 | 1170 | 5 | 249 | 0 | 0 | 0 | logfile |