Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y5E	10695	2023-02-21	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.82	0.01	2.429	0.83	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.003	0.58	0.0	0.03	26.03	0.00	2.066	7.28	0.21	1.9	98.1	0.0	2.01	0.64	0.84	0.85	2.41	15292	1120	18	306	9	0	0	logfile
✔	8E4o	27894	2023-02-21	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	7BG9	12174	2023-02-21	2021-01-06	3.8	3.88	—	3.7	0.013	1.64	6.0	0.11	17.68	0.01	1.518	7.91	0.75	12.0	86.5	1.6	-5.05	0.81	0.82	2.36	3.6	0.002	0.66	0.0	0.03	17.72	0.01	2.055	9.99	0.11	6.2	93.8	0.0	-0.56	1.80	0.80	0.78	1.65	14233	1085	5	262	0	0	0	logfile
✔	6MRU	9213	2023-02-22	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.25	0.00	2.193	3.51	0.00	0.6	99.4	0.0	5.67	3.08	0.76	0.87	1.78	29107	3705	13	0	0	0	0	logfile
✔	6MRW	9214	2023-02-23	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.78	0.00	2.084	7.07	0.00	1.9	98.1	0.0	6.00	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	7PEo	13355	2023-02-25	2021-08-11	4.37	6.48	—	4.4	0.015	1.72	0.0	0.13	14.96	0.02	2.206	4.00	0.60	2.5	97.5	0.0	-2.52	0.90	0.86	—	4.3	0.002	0.57	0.0	0.03	12.13	0.00	2.136	8.76	0.00	2.4	97.6	0.0	1.96	1.35	0.91	0.89	—	26278	3388	42	0	210	0	0	logfile
✔	8A2Q	15101	2023-02-26	2022-06-06	3.53	4.25	3.41	3.5	0.005	0.79	0.0	0.04	16.54	0.00	2.201	1.75	0.17	3.2	96.7	0.0	1.92	0.79	0.70	1.19	3.5	0.004	0.55	0.0	0.03	16.24	0.00	1.991	4.51	0.25	4.1	95.8	0.0	3.16	0.97	0.84	0.82	1.33	27812	2203	4	58	0	0	12784	logfile
✔	6WX6	21951	2023-02-26	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.21	0.00	2.020	2.93	0.69	1.2	98.8	0.0	4.75	0.53	0.79	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	7PF5	13368	2023-02-21	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	29.08	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.68	0.0	0.03	29.24	0.00	2.129	17.53	0.29	2.5	97.5	0.0	0.77	0.69	0.87	0.81	0.67	13470	843	11	334	0	0	0	logfile
✔	7K6Q	22692	2023-02-21	2020-09-21	3.1	3.63	3.21	3.5	0.006	0.78	0.0	0.04	24.92	0.01	2.108	3.36	0.00	2.3	97.7	0.0	1.37	0.81	0.80	3.65	3.5	0.003	0.54	0.0	0.03	26.21	0.00	2.166	9.77	0.00	3.3	96.7	0.0	1.28	0.36	0.81	0.82	2.91	15578	1229	13	292	1	0	0	logfile
✔	6T72	10389	2023-02-25	2019-10-21	3.7	3.79	—	3.8	0.015	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.002	0.52	0.0	0.03	14.87	0.00	2.144	3.38	0.17	2.2	97.8	0.0	1.80	1.24	0.77	0.87	1.62	26278	3388	42	0	210	0	0	logfile
✔	6SE6	10152	2023-02-20	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.65	0.0	0.03	28.61	0.00	2.082	12.77	0.47	1.5	98.5	0.0	1.17	0.58	0.86	0.83	1.17	12068	771	11	290	0	0	0	logfile
✔	6RiU	4898	2023-02-17	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.64	0.0	0.03	15.97	0.00	2.064	12.47	0.00	3.9	96.1	0.0	-0.16	1.43	0.61	0.75	0.76	2882	182	2	0	0	0	1430	logfile
✔	7CR1	30444	2023-02-18	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile
✔	5A6E	3062	2023-02-20	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	7BYN	30246	2023-02-22	2020-04-23	3.3	3.57	—	3.6	0.011	1.29	0.0	0.05	20.66	0.01	1.949	24.44	16.39	2.9	96.9	0.2	-0.58	0.48	0.52	0.70	3.6	0.003	0.63	0.0	0.03	17.31	0.00	2.167	8.91	0.35	1.4	98.6	0.1	2.08	1.00	0.59	0.79	0.71	16349	2000	12	0	8	0	0	logfile
✔	7V2L	31655	2023-02-21	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.003	0.56	0.0	0.03	16.73	0.00	2.080	8.24	0.32	7.0	92.9	0.1	-0.28	0.24	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✔	7D60	30586	2023-02-25	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.40	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.59	0.0	0.03	17.69	0.00	2.194	3.75	1.83	2.6	97.4	0.0	0.99	0.52	0.69	0.84	2.11	26664	3168	22	0	55	0	0	logfile
✔	7K5X	22683	2023-02-23	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.1	0.004	0.59	0.0	0.03	27.56	0.00	2.215	6.81	1.91	2.4	97.6	0.0	1.63	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	6SXo	10344	2023-02-21	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.60	0.0	0.03	16.58	0.00	2.112	10.83	0.70	3.9	96.1	0.0	-1.17	0.66	0.26	0.77	1.97	14894	973	8	326	0	0	0	logfile

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