Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N7P	24230	2022-07-03	2021-06-10	3.24	2.66	—	3.2	0.058	2.03	0.0	0.04	19.97	0.00	1.647	7.96	0.35	1.6	98.4	0.0	1.62	0.58	0.84	2.19	3.0	0.003	0.57	0.0	0.03	17.79	0.00	2.123	11.32	0.00	2.0	98.0	0.0	3.61	0.36	0.59	0.85	1.72	5400	626	4	0	2	0	0	logfile
✔	7RSQ	24677	2022-07-03	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	6TMi	10522	2022-07-03	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	9.16	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.004	0.66	0.0	0.03	17.49	0.01	2.076	10.10	0.58	7.1	92.9	0.0	0.42	1.43	0.53	0.80	1.79	9606	605	5	0	0	0	4842	logfile
✔	7LJ3	23388	2022-07-05	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.010	0.89	0.0	0.03	19.65	0.01	1.899	9.15	4.21	5.0	94.9	0.2	2.05	1.40	0.22	0.78	1.86	25714	2564	12	225	0	0	0	logfile
✔	7VBM	31882	2022-07-03	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.60	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.92	0.00	2.190	6.74	0.00	1.8	98.2	0.0	2.72	0.29	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7WAY	32389	2022-07-03	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	16.63	0.00	2.172	5.73	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.002	0.56	0.0	0.03	17.57	0.00	2.210	6.10	0.72	2.1	97.9	0.0	1.76	0.33	0.88	0.86	2.28	11453	960	4	175	0	0	0	logfile
✔	6ZBJ	11156	2022-07-07	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.7	0.002	0.49	0.0	0.03	15.22	0.00	2.046	3.49	0.00	0.9	99.1	0.0	3.86	1.30	0.87	0.82	1.19	39212	2334	4	0	0	0	19864	logfile
✔	6ZBC	11150	2022-07-04	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.47	0.0	0.03	15.19	0.00	2.079	3.69	0.09	1.1	98.9	0.0	4.36	0.84	0.85	0.81	1.55	19534	1160	4	0	0	0	9902	logfile
✔	7BL6	12219	2022-07-06	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.66	0.0	0.03	16.96	0.00	1.946	35.11	0.17	8.2	91.8	0.1	-1.70	3.13	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	7RZU	24778	2022-07-02	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.005	0.52	0.0	0.03	15.91	0.00	2.234	8.11	1.75	0.0	100.0	0.0	4.99	0.49	0.80	0.81	1.62	2439	324	6	0	0	0	0	logfile
✔	6WKT	21708	2022-07-02	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.65	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.59	0.0	0.03	15.90	0.00	2.202	11.45	0.00	4.8	95.2	0.0	3.63	1.34	0.65	0.75	3.76	3152	424	4	0	0	0	0	logfile
✔	7RZQ	24774	2022-07-02	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	7Q2Z	13786	2022-07-03	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.002	0.53	0.0	0.03	19.97	0.00	2.116	3.52	0.00	2.1	97.7	0.1	2.12	1.23	0.71	0.85	1.71	8258	902	4	46	0	0	0	logfile
✔	7V99	31811	2022-07-04	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	14.51	0.00	2.258	7.89	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.002	0.60	0.0	0.03	15.74	0.00	2.204	11.58	0.40	5.9	94.1	0.1	-0.13	1.37	0.82	0.75	0.69	14582	1170	5	249	0	0	0	logfile
✔	7LV8	23529	2022-07-03	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.003	0.58	0.0	0.03	27.73	0.00	2.150	9.74	0.33	1.9	98.1	0.0	2.31	0.58	0.70	0.79	1.13	10651	764	10	242	0	0	0	logfile
✔	7TRE	26087	2022-07-03	2022-01-28	3.5	3.56	—	3.5	0.006	0.77	0.0	0.05	16.75	0.01	2.188	7.57	0.11	6.4	93.6	0.0	-0.75	0.77	0.77	2.23	3.5	0.006	0.82	0.0	0.03	17.07	0.00	2.172	7.45	0.32	4.1	95.9	0.0	0.75	0.71	0.78	0.82	2.20	13411	1086	4	224	0	0	0	logfile
✔	6YE4	10789	2022-07-03	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.52	0.0	0.03	16.50	0.00	2.347	5.29	0.22	2.4	97.6	0.0	3.50	0.93	0.67	0.87	1.40	9140	1180	10	0	5	0	0	logfile
✔	7TAN	25777	2022-07-03	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.86	0.00	2.211	2.79	0.47	1.9	98.1	0.0	2.21	0.33	0.84	0.87	1.98	12119	768	12	294	0	0	0	logfile
✔	7D80	30611	2022-07-10	2020-10-06	4.1	6.37	—	2.8	0.011	1.03	0.0	0.05	16.93	0.01	1.560	8.57	0.88	12.7	86.9	0.3	-5.50	0.81	0.63	—	2.8	0.005	0.66	0.0	0.03	16.41	0.01	1.960	32.50	0.00	10.8	89.0	0.2	-2.88	0.81	0.94	0.88	—	150808	6218	57	4761	0	0	0	logfile
✔	7D4Q	30576	2022-07-05	2020-09-24	2.74	2.99	2.80	3.0	0.009	0.78	0.0	0.04	12.13	0.00	2.254	6.42	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.003	0.48	0.0	0.03	15.53	0.00	2.196	6.27	1.13	1.4	98.6	0.0	2.53	0.44	0.69	0.87	3.86	22388	2672	8	0	24	0	0	logfile

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