Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZS	24776	2022-11-29	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.43	0.0	0.04	15.95	0.00	2.318	4.66	0.71	0.0	100.0	0.0	5.82	1.18	0.78	0.81	1.27	2445	324	6	0	0	0	0	logfile
✔	7KU5	23034	2022-11-29	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✔	7N5G	24189	2022-11-29	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7QEo	13935	2022-11-29	2021-12-03	2.9	3.47	—	3.1	0.008	0.69	0.0	0.04	13.62	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.63	0.0	0.04	15.41	0.00	2.184	6.36	0.91	2.5	97.5	0.0	2.81	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	7PDD	13334	2022-11-29	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	21.59	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.76	0.0	0.04	13.98	0.00	2.150	21.36	0.00	5.3	94.7	0.0	-1.30	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7PDH	13338	2022-11-29	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.54	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.69	0.0	0.04	16.40	0.00	2.171	14.54	0.00	6.7	93.3	0.0	-0.70	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7N9A	24253	2022-11-29	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.70	0.0	0.04	15.29	0.00	2.157	13.87	1.55	2.9	97.1	0.0	-1.08	0.56	0.73	0.70	2.14	2431	312	2	0	0	0	0	logfile
✔	7W9F	32366	2022-11-29	2021-12-09	3.6	2.59	—	2.2	0.003	0.72	0.0	0.05	13.99	0.01	2.302	3.47	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.66	0.0	0.04	16.05	0.00	2.090	11.05	0.37	4.4	95.6	0.0	-1.09	0.54	0.74	0.73	1.89	4856	625	3	0	0	0	0	logfile
✔	7SoA	25264	2022-11-29	2021-10-29	3.1	3.33	3.14	3.3	0.010	1.26	0.0	0.08	10.28	0.01	2.194	1.20	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.004	0.59	0.0	0.04	13.33	0.00	2.221	4.12	0.73	2.8	97.2	0.0	0.92	0.57	0.68	0.90	4.89	3850	477	5	0	6	0	0	logfile
✔	7LKH	23408	2022-11-29	2021-02-02	3.5	3.06	—	3.6	0.006	0.93	0.0	0.05	13.20	0.01	1.903	8.46	0.22	5.5	94.5	0.0	-0.99	0.64	0.78	3.39	3.6	0.003	0.66	0.0	0.04	15.42	0.00	2.254	6.89	0.22	4.7	95.3	0.0	-0.02	0.46	0.64	0.79	3.08	4179	516	4	0	2	0	0	logfile
✔	7P16	13157	2022-11-29	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.164	11.96	0.00	3.4	96.6	0.0	0.67	1.45	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7TiK	25912	2022-11-29	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.80	1.38	2565	339	6	0	0	0	0	logfile
✔	7UL4	26591	2022-11-29	2022-04-03	2.8	2.99	2.86	3.0	0.010	1.08	0.0	0.06	12.51	0.01	2.222	2.52	0.00	2.1	97.9	0.0	1.05	0.65	0.80	4.17	3.1	0.003	0.59	0.0	0.04	14.90	0.00	2.270	2.73	1.38	1.2	98.8	0.0	2.14	0.42	0.61	0.81	3.26	2524	351	3	0	1	4	0	logfile
✔	7TAS	25783	2022-11-29	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.49	0.0	0.09	11.42	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.66	0.0	0.04	13.84	0.00	2.239	5.45	0.34	3.9	96.1	0.0	-0.14	0.52	0.65	0.85	4.09	3147	417	4	0	3	0	0	logfile
✔	7EYA	31380	2022-11-29	2021-05-30	3.77	3.98	—	4.0	0.008	0.99	0.0	0.04	13.90	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	4.0	0.003	0.64	0.0	0.04	16.17	0.01	2.170	9.53	0.60	7.0	92.8	0.2	-1.66	1.17	0.60	0.77	2.28	4629	576	5	0	3	0	0	logfile
✔	7BC5	12139	2022-11-29	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.002	0.69	0.0	0.04	16.82	0.00	2.275	14.00	0.76	6.9	93.1	0.0	-2.62	1.28	0.23	0.57	0.92	1200	161	1	0	0	0	0	logfile
✔	7P14	13155	2022-11-29	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.003	0.59	0.0	0.04	16.52	0.00	2.253	9.93	0.76	3.6	96.4	0.0	2.50	0.43	0.61	0.78	1.61	3796	454	3	0	3	0	0	logfile
✔	7TPG	26054	2022-11-29	2022-01-25	3.23	3.54	—	3.5	0.003	1.06	0.0	0.04	13.88	0.00	2.078	7.39	0.20	3.5	96.5	0.0	0.79	0.63	0.78	2.30	3.5	0.003	0.56	0.0	0.04	16.05	0.00	2.241	7.29	0.40	3.5	96.5	0.0	0.50	2.28	0.63	0.81	2.02	4777	626	4	0	1	0	0	logfile
✔	7WED	32447	2022-11-29	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.003	0.71	0.0	0.04	16.62	0.00	2.245	8.04	1.09	8.0	92.0	0.0	-1.22	1.14	0.56	0.78	2.03	3358	431	3	0	0	0	0	logfile
✔	7P9U	13266	2022-11-29	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.77	0.0	0.04	16.23	0.00	2.129	13.05	0.93	6.4	93.2	0.4	0.32	0.42	0.52	0.76	1.01	3943	503	2	0	0	0	0	logfile

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