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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XMF | 22257 | 2023-04-20 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.46 | 0.00 | 2.246 | 8.60 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 17.60 | 0.00 | 2.155 | 15.19 | 0.40 | 9.1 | 90.9 | 0.0 | -0.44 | 0.47 | 0.70 | 0.76 | 2.47 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2023-04-24 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.59 | 0.00 | 2.142 | 4.35 | 0.10 | 3.6 | 96.4 | 0.0 | 4.58 | 1.15 | 0.75 | 0.90 | 2.83 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CRo | 30453 | 2023-04-27 | 2020-08-14 | 3.75 | 3.86 | — | 3.8 | 0.006 | 0.74 | 1.0 | 0.04 | 27.64 | 0.00 | 1.421 | 10.71 | 1.45 | 8.7 | 91.3 | 0.0 | -5.38 | 0.78 | 0.83 | 2.26 | 3.8 | 0.004 | 0.59 | 0.0 | 0.03 | 27.97 | 0.00 | 2.035 | 6.66 | 0.48 | 6.4 | 93.6 | 0.0 | -2.39 | 0.50 | 0.79 | 0.84 | 1.39 | 14797 | 999 | 11 | 336 | 4 | 0 | 0 | logfile |
✔ | 6T93 | 10408 | 2023-04-22 | 2019-10-25 | 3.49 | 4.10 | — | 3.7 | 0.014 | 1.15 | 0.0 | 0.06 | 27.23 | 0.01 | 2.435 | 0.74 | 0.00 | 0.3 | 99.7 | 0.0 | 0.78 | 0.87 | 0.85 | 2.94 | 3.7 | 0.004 | 0.68 | 0.0 | 0.03 | 28.03 | 0.00 | 2.203 | 11.73 | 0.95 | 3.0 | 97.0 | 0.0 | 2.52 | 2.06 | 0.87 | 0.87 | 1.78 | 12199 | 758 | 10 | 302 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-04-22 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✔ | 8CSZ | 26976 | 2023-04-21 | 2022-05-13 | 3.2 | 3.55 | 3.13 | 3.3 | 0.005 | 0.67 | 0.0 | 0.04 | 19.39 | 0.00 | 1.962 | 11.72 | 0.00 | 4.9 | 95.1 | 0.0 | -0.97 | 0.84 | 0.86 | 4.03 | 3.3 | 0.004 | 0.57 | 0.0 | 0.03 | 19.22 | 0.00 | 1.980 | 9.85 | 0.24 | 4.9 | 95.1 | 0.0 | -0.14 | 1.12 | 0.84 | 0.88 | 3.57 | 8948 | 494 | 5 | 236 | 3 | 0 | 0 | logfile |
✔ | 7UTN | 26782 | 2023-04-20 | 2022-04-27 | 2.74 | 3.33 | 2.90 | 3.1 | 0.007 | 0.68 | 0.0 | 0.04 | 18.57 | 0.00 | 2.080 | 8.58 | 0.00 | 1.8 | 98.2 | 0.0 | 0.01 | 0.86 | 0.88 | 4.65 | 3.1 | 0.003 | 0.56 | 0.0 | 0.03 | 18.52 | 0.00 | 2.158 | 8.00 | 0.58 | 1.8 | 98.2 | 0.0 | 0.95 | 0.28 | 0.82 | 0.85 | 3.82 | 8003 | 397 | 4 | 228 | 0 | 0 | 0 | logfile |
✔ | 6ZBC | 11150 | 2023-04-25 | 2020-06-08 | 3.1 | 3.91 | 3.31 | 3.6 | 0.007 | 1.02 | 0.0 | 0.05 | 13.80 | 0.00 | 2.449 | 1.08 | 0.00 | 1.3 | 98.7 | 0.0 | -0.79 | 0.85 | 0.80 | 2.24 | 3.6 | 0.002 | 0.49 | 0.0 | 0.03 | 15.14 | 0.00 | 2.071 | 3.69 | 0.18 | 1.4 | 98.6 | 0.0 | 4.05 | 0.84 | 0.85 | 0.81 | 1.66 | 19534 | 1160 | 4 | 0 | 0 | 0 | 9902 | logfile |
✔ | 7DBP | 30161 | 2023-04-22 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.36 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | 4.3 | 0.005 | 0.66 | 0.0 | 0.03 | 30.47 | 0.00 | 2.147 | 27.18 | 0.00 | 3.7 | 96.3 | 0.0 | 0.77 | 2.53 | 0.90 | 0.74 | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✔ | 7CR1 | 30444 | 2023-04-20 | 2020-08-12 | 3.4 | 3.42 | — | 3.5 | 0.012 | 0.73 | 0.0 | 0.04 | 14.92 | 0.00 | 2.185 | 26.22 | 0.00 | 4.1 | 95.9 | 0.0 | -2.00 | 0.59 | 0.82 | 3.14 | 3.5 | 0.003 | 0.53 | 0.0 | 0.03 | 16.48 | 0.00 | 2.133 | 7.37 | 0.60 | 2.2 | 97.8 | 0.0 | 2.94 | 1.18 | 0.58 | 0.81 | 1.83 | 8220 | 1000 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7CR0 | 30443 | 2023-04-20 | 2020-08-12 | 3.1 | 3.35 | — | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 14.38 | 0.00 | 2.212 | 5.87 | 0.00 | 4.0 | 96.0 | 0.0 | -4.99 | 0.58 | 0.82 | 3.75 | 3.4 | 0.003 | 0.59 | 0.0 | 0.03 | 15.47 | 0.00 | 2.219 | 7.51 | 0.12 | 3.4 | 96.6 | 0.0 | 2.81 | 0.56 | 0.57 | 0.81 | 2.63 | 8188 | 1004 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BG9 | 12174 | 2023-04-23 | 2021-01-06 | 3.8 | 3.88 | — | 3.7 | 0.013 | 1.64 | 6.0 | 0.11 | 17.68 | 0.01 | 1.518 | 7.91 | 0.75 | 12.0 | 86.5 | 1.6 | -5.05 | 0.81 | 0.82 | 2.36 | 3.6 | 0.002 | 0.66 | 0.0 | 0.03 | 17.72 | 0.01 | 2.055 | 9.99 | 0.11 | 6.2 | 93.8 | 0.0 | -0.56 | 1.80 | 0.80 | 0.78 | 1.65 | 14233 | 1085 | 5 | 262 | 0 | 0 | 0 | logfile |
✔ | 7YoJ | 33983 | 2023-04-22 | 2022-08-01 | 3.36 | 3.79 | 3.58 | 3.7 | 0.005 | 0.87 | 0.0 | 0.05 | 20.71 | 0.01 | 2.304 | 7.98 | 2.19 | 5.9 | 93.6 | 0.5 | -2.03 | 0.77 | 0.77 | 1.75 | 3.6 | 0.003 | 0.65 | 0.0 | 0.03 | 20.44 | 0.00 | 2.094 | 13.72 | 0.27 | 5.3 | 94.7 | 0.0 | 0.21 | 1.01 | 0.77 | 0.81 | 1.68 | 11545 | 867 | 4 | 216 | 0 | 0 | 0 | logfile |
✔ | 6PX1 | 20516 | 2023-04-22 | 2019-07-24 | 3.3 | 3.48 | — | 3.4 | 0.006 | 0.87 | 0.0 | 0.05 | 28.73 | 0.01 | 2.228 | 2.28 | 0.00 | 1.9 | 98.1 | 0.0 | -2.98 | 0.79 | 0.83 | 3.70 | 3.4 | 0.003 | 0.56 | 0.0 | 0.03 | 28.54 | 0.00 | 2.105 | 9.02 | 0.00 | 1.8 | 98.2 | 0.0 | 2.61 | 1.13 | 0.79 | 0.84 | 2.47 | 11937 | 752 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6WYV | 21969 | 2023-04-27 | 2020-05-13 | 2.75 | 3.18 | — | 3.0 | 0.006 | 0.51 | 1.0 | 0.02 | 13.15 | 0.03 | 1.925 | 3.89 | 1.57 | 7.1 | 92.8 | 0.1 | -4.66 | 0.70 | 0.84 | 3.35 | 3.0 | 0.004 | 0.69 | 1.0 | 0.03 | 15.47 | 0.01 | 2.001 | 11.08 | 4.98 | 7.6 | 92.3 | 0.1 | -1.76 | 1.51 | 0.71 | 0.88 | 3.05 | 72194 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7PF5 | 13368 | 2023-04-23 | 2021-08-11 | 3.8 | 4.51 | — | 3.4 | 0.006 | 0.89 | 0.0 | 0.05 | 29.08 | 0.01 | 2.264 | 6.06 | 0.00 | 1.8 | 98.2 | 0.0 | -0.59 | 0.87 | 0.80 | 0.89 | 3.4 | 0.004 | 0.68 | 0.0 | 0.03 | 29.24 | 0.00 | 2.129 | 17.53 | 0.29 | 2.5 | 97.5 | 0.0 | 0.77 | 0.69 | 0.87 | 0.81 | 0.67 | 13470 | 843 | 11 | 334 | 0 | 0 | 0 | logfile |
✔ | 6PCR | 20305 | 2023-04-27 | 2019-06-18 | 2.5 | 3.04 | — | 2.9 | 0.006 | 0.47 | 0.0 | 0.03 | 13.21 | 0.03 | 1.808 | 2.72 | 2.36 | 5.2 | 94.6 | 0.2 | -3.36 | 0.72 | 0.89 | 4.33 | 2.9 | 0.005 | 0.69 | 0.0 | 0.03 | 14.91 | 0.01 | 1.905 | 6.82 | 2.36 | 6.1 | 93.9 | 0.0 | -0.53 | 1.23 | 0.72 | 0.91 | 4.47 | 72166 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7MVV | 24057 | 2023-04-27 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.98 | 0.00 | 2.021 | 7.18 | 0.07 | 3.0 | 97.0 | 0.0 | 2.84 | 0.96 | 0.89 | 0.82 | 1.13 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✔ | 6PC6 | 20297 | 2023-04-27 | 2019-06-16 | 2.5 | 3.08 | — | 2.9 | 0.008 | 0.56 | 0.0 | 0.02 | 13.08 | 0.03 | 1.930 | 2.91 | 2.11 | 6.3 | 93.7 | 0.0 | -3.58 | 0.73 | 0.88 | 4.50 | 2.9 | 0.005 | 0.67 | 0.0 | 0.03 | 14.86 | 0.01 | 1.949 | 7.94 | 3.68 | 6.6 | 93.2 | 0.2 | -0.81 | 0.91 | 0.74 | 0.90 | 4.30 | 72127 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6TYi | 20583 | 2023-04-21 | 2019-08-09 | 3.3 | 3.55 | — | 3.5 | 0.012 | 1.03 | 0.0 | 0.05 | 15.89 | 0.00 | 1.796 | 11.31 | 0.43 | 4.8 | 95.1 | 0.1 | -0.84 | 0.70 | 0.81 | 1.90 | 3.5 | 0.003 | 0.54 | 0.0 | 0.03 | 17.18 | 0.00 | 2.214 | 6.38 | 0.32 | 2.6 | 97.4 | 0.0 | 3.07 | 1.18 | 0.61 | 0.77 | 1.34 | 9184 | 1186 | 11 | 0 | 4 | 0 | 0 | logfile |