Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XMF	22257	2023-04-20	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.60	0.0	0.03	17.60	0.00	2.155	15.19	0.40	9.1	90.9	0.0	-0.44	0.47	0.70	0.76	2.47	7382	627	3	109	1	0	0	logfile
✔	6DWB	8924	2023-04-24	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	7CRo	30453	2023-04-27	2020-08-14	3.75	3.86	—	3.8	0.006	0.74	1.0	0.04	27.64	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.004	0.59	0.0	0.03	27.97	0.00	2.035	6.66	0.48	6.4	93.6	0.0	-2.39	0.50	0.79	0.84	1.39	14797	999	11	336	4	0	0	logfile
✔	6T93	10408	2023-04-22	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.74	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.68	0.0	0.03	28.03	0.00	2.203	11.73	0.95	3.0	97.0	0.0	2.52	2.06	0.87	0.87	1.78	12199	758	10	302	0	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	8CSZ	26976	2023-04-21	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.57	0.0	0.03	19.22	0.00	1.980	9.85	0.24	4.9	95.1	0.0	-0.14	1.12	0.84	0.88	3.57	8948	494	5	236	3	0	0	logfile
✔	7UTN	26782	2023-04-20	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	18.52	0.00	2.158	8.00	0.58	1.8	98.2	0.0	0.95	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	6ZBC	11150	2023-04-25	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.49	0.0	0.03	15.14	0.00	2.071	3.69	0.18	1.4	98.6	0.0	4.05	0.84	0.85	0.81	1.66	19534	1160	4	0	0	0	9902	logfile
✔	7DBP	30161	2023-04-22	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.66	0.0	0.03	30.47	0.00	2.147	27.18	0.00	3.7	96.3	0.0	0.77	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	7CR1	30444	2023-04-20	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile
✔	7CR0	30443	2023-04-20	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.59	0.0	0.03	15.47	0.00	2.219	7.51	0.12	3.4	96.6	0.0	2.81	0.56	0.57	0.81	2.63	8188	1004	4	0	0	0	0	logfile
✔	7BG9	12174	2023-04-23	2021-01-06	3.8	3.88	—	3.7	0.013	1.64	6.0	0.11	17.68	0.01	1.518	7.91	0.75	12.0	86.5	1.6	-5.05	0.81	0.82	2.36	3.6	0.002	0.66	0.0	0.03	17.72	0.01	2.055	9.99	0.11	6.2	93.8	0.0	-0.56	1.80	0.80	0.78	1.65	14233	1085	5	262	0	0	0	logfile
✔	7YoJ	33983	2023-04-22	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	20.71	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.65	0.0	0.03	20.44	0.00	2.094	13.72	0.27	5.3	94.7	0.0	0.21	1.01	0.77	0.81	1.68	11545	867	4	216	0	0	0	logfile
✔	6PX1	20516	2023-04-22	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.56	0.0	0.03	28.54	0.00	2.105	9.02	0.00	1.8	98.2	0.0	2.61	1.13	0.79	0.84	2.47	11937	752	10	290	0	0	0	logfile
✔	6WYV	21969	2023-04-27	2020-05-13	2.75	3.18	—	3.0	0.006	0.51	1.0	0.02	13.15	0.03	1.925	3.89	1.57	7.1	92.8	0.1	-4.66	0.70	0.84	3.35	3.0	0.004	0.69	1.0	0.03	15.47	0.01	2.001	11.08	4.98	7.6	92.3	0.1	-1.76	1.51	0.71	0.88	3.05	72194	971	9	3015	1	0	0	logfile
✔	7PF5	13368	2023-04-23	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	29.08	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.68	0.0	0.03	29.24	0.00	2.129	17.53	0.29	2.5	97.5	0.0	0.77	0.69	0.87	0.81	0.67	13470	843	11	334	0	0	0	logfile
✔	6PCR	20305	2023-04-27	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✔	7MVV	24057	2023-04-27	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	6PC6	20297	2023-04-27	2019-06-16	2.5	3.08	—	2.9	0.008	0.56	0.0	0.02	13.08	0.03	1.930	2.91	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.005	0.67	0.0	0.03	14.86	0.01	1.949	7.94	3.68	6.6	93.2	0.2	-0.81	0.91	0.74	0.90	4.30	72127	963	8	3015	1	0	0	logfile
✔	6TYi	20583	2023-04-21	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.003	0.54	0.0	0.03	17.18	0.00	2.214	6.38	0.32	2.6	97.4	0.0	3.07	1.18	0.61	0.77	1.34	9184	1186	11	0	4	0	0	logfile

• ← previous
• Page 6 of 372
• next →