Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NY3	8980	2023-11-15	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.64	0.0	0.03	19.92	0.00	2.225	9.85	0.00	14.6	85.3	0.1	-1.85	1.01	0.66	0.80	0.74	10214	794	4	164	121	0	0	logfile
✔	6VPS	21316	2023-11-13	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.003	0.51	0.0	0.03	20.10	0.00	2.351	3.30	1.31	6.9	93.1	0.0	-3.83	1.19	0.47	0.87	6.39	2736	279	9	0	0	0	0	logfile
✔	7XQ9	33391	2023-11-17	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.51	0.0	0.03	15.61	0.00	2.205	4.12	0.14	2.2	97.8	0.0	3.52	0.53	0.54	0.83	2.53	19632	2412	12	0	0	0	0	logfile
✔	6VAK	21141	2023-11-18	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.002	0.58	0.0	0.03	16.38	0.00	2.190	5.71	0.72	5.9	94.1	0.0	2.31	0.55	0.70	0.82	2.80	22781	2992	11	0	0	0	0	logfile
✔	7RQU	24636	2023-11-22	2021-08-08	3.05	3.32	—	3.3	0.012	1.15	0.0	0.06	17.93	0.00	2.334	3.79	0.00	3.2	96.8	0.0	1.69	0.63	0.76	2.73	3.3	0.003	0.47	0.0	0.03	15.76	0.00	2.351	3.35	0.36	3.9	96.1	0.0	1.89	0.26	0.64	0.80	2.64	35602	2416	8	0	38	0	16568	logfile
✔	7RQW	24638	2023-11-21	2021-08-08	3.11	3.40	—	3.5	0.011	0.99	0.0	0.06	16.48	0.00	2.042	7.24	0.00	4.4	95.6	0.0	0.31	0.55	0.69	2.95	3.5	0.004	0.47	0.0	0.03	15.91	0.00	2.024	6.89	0.06	4.0	96.0	0.0	1.23	0.38	0.52	0.69	2.61	32984	2128	8	0	20	0	15804	logfile
✔	7V90	31806	2023-11-15	2021-08-24	3.5	3.21	3.42	3.5	0.005	0.73	3.0	0.04	26.19	0.00	2.219	8.45	4.01	4.7	94.8	0.5	-0.16	0.66	0.78	2.00	3.4	0.003	0.54	0.0	0.03	27.60	0.00	2.256	6.00	0.46	3.8	96.2	0.0	2.27	1.12	0.73	0.84	2.50	12148	781	10	290	0	0	0	logfile
✔	7WB0	32391	2023-11-15	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.57	0.0	0.03	19.30	0.00	2.126	7.96	0.14	4.7	95.2	0.1	0.59	1.05	0.71	0.77	1.11	10096	797	4	175	0	0	0	logfile
✔	5V6P	8637	2023-11-14	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.63	0.0	0.03	12.99	0.00	2.171	12.95	0.00	3.0	97.0	0.0	2.68	1.65	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	6oT5	20194	2023-11-21	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.86	0.0	0.05	10.12	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.005	0.60	0.0	0.03	13.54	0.00	1.951	6.51	0.21	5.2	94.8	0.0	0.20	0.83	0.68	0.79	2.71	33420	2444	8	0	52	0	15620	logfile
✔	6Y5E	10695	2023-11-16	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.82	0.01	2.429	0.83	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.003	0.57	0.0	0.03	26.13	0.00	2.063	7.01	0.21	1.5	98.5	0.0	1.99	0.64	0.84	0.85	2.33	15292	1120	18	306	9	0	0	logfile
✔	7XGR	33187	2023-11-13	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile
✔	8E4o	27894	2023-11-13	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	7BL3	12216	2023-11-21	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.43	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.003	0.59	0.0	0.03	15.26	0.00	2.015	15.70	0.48	8.1	91.9	0.0	-1.52	0.54	0.75	0.82	0.94	92831	3612	39	3021	2	27	0	logfile
✔	8E4N	27893	2023-11-13	2022-08-18	3.07	3.58	3.04	3.3	0.003	0.47	0.0	0.04	11.07	0.01	2.123	8.01	0.00	1.8	98.2	0.0	3.01	0.70	0.79	2.72	3.3	0.003	0.68	0.0	0.03	13.61	0.00	2.129	8.20	0.46	3.0	97.0	0.1	2.62	0.69	0.70	0.79	2.64	52736	3604	8	0	4	0	25460	logfile
✔	6MRU	9213	2023-11-14	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.25	0.00	2.193	3.51	0.00	0.6	99.4	0.0	5.67	3.08	0.76	0.87	1.78	29107	3705	13	0	0	0	0	logfile
✔	7YG4	33807	2023-11-14	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	3.3	0.002	0.57	0.0	0.03	17.05	0.00	2.235	6.89	0.00	3.3	96.7	0.0	2.29	0.36	0.75	0.81	0.84	7510	953	3	0	0	0	0	logfile
✔	7V9U	31827	2023-11-14	2021-08-26	3.12	3.31	—	3.2	0.004	0.63	0.0	0.04	22.35	0.01	2.180	10.84	0.00	6.2	93.8	0.0	-1.53	0.75	0.78	3.58	3.2	0.003	0.58	0.0	0.03	22.74	0.00	2.178	10.48	0.18	5.4	94.6	0.0	-0.73	1.23	0.76	0.81	3.41	9354	618	8	209	0	0	0	logfile
✔	7VoJ	32050	2023-11-13	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.002	0.56	0.0	0.03	16.62	0.00	1.924	4.63	2.02	2.9	97.1	0.0	3.11	2.16	0.60	0.82	1.75	6318	800	4	0	6	0	0	logfile
✔	6oFF	20044	2023-11-15	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.002	0.53	0.0	0.03	15.58	0.00	2.230	6.89	0.25	3.8	96.2	0.0	4.04	1.22	0.62	0.88	3.84	11016	1404	18	0	0	0	0	logfile

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