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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NY3 | 8980 | 2023-11-15 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 19.98 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.64 | 0.0 | 0.03 | 19.92 | 0.00 | 2.225 | 9.85 | 0.00 | 14.6 | 85.3 | 0.1 | -1.85 | 1.01 | 0.66 | 0.80 | 0.74 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 6VPS | 21316 | 2023-11-13 | 2020-02-04 | 2.6 | 2.62 | 2.52 | 2.7 | 0.011 | 1.14 | 10.0 | 0.13 | 20.44 | 0.01 | 2.501 | 19.04 | 0.00 | 6.9 | 93.1 | 0.0 | -3.61 | 0.49 | 0.90 | 6.11 | 2.7 | 0.003 | 0.51 | 0.0 | 0.03 | 20.10 | 0.00 | 2.351 | 3.30 | 1.31 | 6.9 | 93.1 | 0.0 | -3.83 | 1.19 | 0.47 | 0.87 | 6.39 | 2736 | 279 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XQ9 | 33391 | 2023-11-17 | 2022-05-07 | 3.3 | 3.62 | 3.55 | 3.8 | 0.005 | 0.83 | 0.0 | 0.06 | 14.70 | 0.01 | 2.253 | 1.72 | 3.89 | 3.6 | 96.4 | 0.0 | -2.05 | 0.52 | 0.82 | 2.74 | 3.8 | 0.002 | 0.51 | 0.0 | 0.03 | 15.61 | 0.00 | 2.205 | 4.12 | 0.14 | 2.2 | 97.8 | 0.0 | 3.52 | 0.53 | 0.54 | 0.83 | 2.53 | 19632 | 2412 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAK | 21141 | 2023-11-18 | 2019-12-17 | 3.48 | 3.85 | — | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.36 | 0.00 | 2.047 | 7.47 | 2.96 | 8.2 | 91.8 | 0.0 | -2.80 | 0.73 | 0.81 | 3.28 | 3.8 | 0.002 | 0.58 | 0.0 | 0.03 | 16.38 | 0.00 | 2.190 | 5.71 | 0.72 | 5.9 | 94.1 | 0.0 | 2.31 | 0.55 | 0.70 | 0.82 | 2.80 | 22781 | 2992 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RQU | 24636 | 2023-11-22 | 2021-08-08 | 3.05 | 3.32 | — | 3.3 | 0.012 | 1.15 | 0.0 | 0.06 | 17.93 | 0.00 | 2.334 | 3.79 | 0.00 | 3.2 | 96.8 | 0.0 | 1.69 | 0.63 | 0.76 | 2.73 | 3.3 | 0.003 | 0.47 | 0.0 | 0.03 | 15.76 | 0.00 | 2.351 | 3.35 | 0.36 | 3.9 | 96.1 | 0.0 | 1.89 | 0.26 | 0.64 | 0.80 | 2.64 | 35602 | 2416 | 8 | 0 | 38 | 0 | 16568 | logfile |
✔ | 7RQW | 24638 | 2023-11-21 | 2021-08-08 | 3.11 | 3.40 | — | 3.5 | 0.011 | 0.99 | 0.0 | 0.06 | 16.48 | 0.00 | 2.042 | 7.24 | 0.00 | 4.4 | 95.6 | 0.0 | 0.31 | 0.55 | 0.69 | 2.95 | 3.5 | 0.004 | 0.47 | 0.0 | 0.03 | 15.91 | 0.00 | 2.024 | 6.89 | 0.06 | 4.0 | 96.0 | 0.0 | 1.23 | 0.38 | 0.52 | 0.69 | 2.61 | 32984 | 2128 | 8 | 0 | 20 | 0 | 15804 | logfile |
✔ | 7V90 | 31806 | 2023-11-15 | 2021-08-24 | 3.5 | 3.21 | 3.42 | 3.5 | 0.005 | 0.73 | 3.0 | 0.04 | 26.19 | 0.00 | 2.219 | 8.45 | 4.01 | 4.7 | 94.8 | 0.5 | -0.16 | 0.66 | 0.78 | 2.00 | 3.4 | 0.003 | 0.54 | 0.0 | 0.03 | 27.60 | 0.00 | 2.256 | 6.00 | 0.46 | 3.8 | 96.2 | 0.0 | 2.27 | 1.12 | 0.73 | 0.84 | 2.50 | 12148 | 781 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7WB0 | 32391 | 2023-11-15 | 2021-12-15 | 3.2 | 3.52 | — | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 18.37 | 0.00 | 2.136 | 7.20 | 0.00 | 3.3 | 96.6 | 0.1 | 0.54 | 0.70 | 0.73 | 1.78 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 19.30 | 0.00 | 2.126 | 7.96 | 0.14 | 4.7 | 95.2 | 0.1 | 0.59 | 1.05 | 0.71 | 0.77 | 1.11 | 10096 | 797 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 5V6P | 8637 | 2023-11-14 | 2017-03-17 | 4.1 | 4.04 | — | 4.1 | 0.015 | 1.37 | 0.0 | 0.08 | 9.65 | 0.01 | 2.463 | 1.41 | 0.00 | 2.6 | 97.0 | 0.4 | 0.18 | 0.40 | 0.58 | — | 4.0 | 0.003 | 0.63 | 0.0 | 0.03 | 12.99 | 0.00 | 2.171 | 12.95 | 0.00 | 3.0 | 97.0 | 0.0 | 2.68 | 1.65 | 0.41 | 0.66 | — | 9194 | 540 | 2 | 0 | 0 | 0 | 4676 | logfile |
✔ | 6oT5 | 20194 | 2023-11-21 | 2019-05-02 | 3.6 | 3.71 | 3.54 | 3.7 | 0.009 | 0.86 | 0.0 | 0.05 | 10.12 | 0.00 | 1.623 | 6.48 | 0.00 | 3.0 | 97.0 | 0.0 | -2.73 | 0.65 | 0.76 | 3.18 | 3.7 | 0.005 | 0.60 | 0.0 | 0.03 | 13.54 | 0.00 | 1.951 | 6.51 | 0.21 | 5.2 | 94.8 | 0.0 | 0.20 | 0.83 | 0.68 | 0.79 | 2.71 | 33420 | 2444 | 8 | 0 | 52 | 0 | 15620 | logfile |
✔ | 6Y5E | 10695 | 2023-11-16 | 2020-02-25 | 3.15 | 3.68 | — | 3.3 | 0.014 | 1.16 | 0.0 | 0.07 | 25.82 | 0.01 | 2.429 | 0.83 | 0.21 | 1.9 | 98.0 | 0.1 | 0.54 | 0.84 | 0.83 | 4.07 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 26.13 | 0.00 | 2.063 | 7.01 | 0.21 | 1.5 | 98.5 | 0.0 | 1.99 | 0.64 | 0.84 | 0.85 | 2.33 | 15292 | 1120 | 18 | 306 | 9 | 0 | 0 | logfile |
✔ | 7XGR | 33187 | 2023-11-13 | 2022-04-06 | 2.6 | 3.38 | 2.47 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 18.88 | 0.00 | 2.259 | 8.70 | 2.17 | 6.3 | 93.7 | 0.0 | -0.28 | 0.52 | 0.75 | 2.35 | 3.2 | 0.002 | 0.61 | 0.0 | 0.03 | 19.07 | 0.00 | 2.203 | 7.19 | 1.96 | 5.8 | 94.2 | 0.0 | 2.24 | 1.25 | 0.55 | 0.83 | 2.09 | 4340 | 546 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E4o | 27894 | 2023-11-13 | 2022-08-18 | 3.43 | 3.87 | 3.39 | 3.6 | 0.002 | 0.44 | 0.0 | 0.03 | 11.67 | 0.01 | 2.257 | 5.45 | 0.45 | 1.8 | 98.2 | 0.0 | 2.99 | 0.68 | 0.73 | 2.38 | 3.7 | 0.003 | 0.66 | 0.0 | 0.03 | 13.35 | 0.00 | 2.024 | 6.81 | 0.19 | 3.0 | 97.0 | 0.0 | 2.90 | 0.72 | 0.72 | 0.80 | 1.84 | 53496 | 3588 | 8 | 0 | 4 | 0 | 26024 | logfile |
✔ | 7BL3 | 12216 | 2023-11-21 | 2021-01-18 | 3.5 | 3.69 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.03 | 14.11 | 0.00 | 2.089 | 12.43 | 0.03 | 6.4 | 93.6 | 0.0 | -1.33 | 0.75 | 0.79 | 1.02 | 3.5 | 0.003 | 0.59 | 0.0 | 0.03 | 15.26 | 0.00 | 2.015 | 15.70 | 0.48 | 8.1 | 91.9 | 0.0 | -1.52 | 0.54 | 0.75 | 0.82 | 0.94 | 92831 | 3612 | 39 | 3021 | 2 | 27 | 0 | logfile |
✔ | 8E4N | 27893 | 2023-11-13 | 2022-08-18 | 3.07 | 3.58 | 3.04 | 3.3 | 0.003 | 0.47 | 0.0 | 0.04 | 11.07 | 0.01 | 2.123 | 8.01 | 0.00 | 1.8 | 98.2 | 0.0 | 3.01 | 0.70 | 0.79 | 2.72 | 3.3 | 0.003 | 0.68 | 0.0 | 0.03 | 13.61 | 0.00 | 2.129 | 8.20 | 0.46 | 3.0 | 97.0 | 0.1 | 2.62 | 0.69 | 0.70 | 0.79 | 2.64 | 52736 | 3604 | 8 | 0 | 4 | 0 | 25460 | logfile |
✔ | 6MRU | 9213 | 2023-11-14 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.25 | 0.00 | 2.193 | 3.51 | 0.00 | 0.6 | 99.4 | 0.0 | 5.67 | 3.08 | 0.76 | 0.87 | 1.78 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YG4 | 33807 | 2023-11-14 | 2022-07-11 | 3.1 | 3.38 | 3.15 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.98 | 0.00 | 2.147 | 7.09 | 0.00 | 3.3 | 96.7 | 0.0 | 0.41 | 0.75 | 0.81 | 1.84 | 3.3 | 0.002 | 0.57 | 0.0 | 0.03 | 17.05 | 0.00 | 2.235 | 6.89 | 0.00 | 3.3 | 96.7 | 0.0 | 2.29 | 0.36 | 0.75 | 0.81 | 0.84 | 7510 | 953 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V9U | 31827 | 2023-11-14 | 2021-08-26 | 3.12 | 3.31 | — | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 22.35 | 0.01 | 2.180 | 10.84 | 0.00 | 6.2 | 93.8 | 0.0 | -1.53 | 0.75 | 0.78 | 3.58 | 3.2 | 0.003 | 0.58 | 0.0 | 0.03 | 22.74 | 0.00 | 2.178 | 10.48 | 0.18 | 5.4 | 94.6 | 0.0 | -0.73 | 1.23 | 0.76 | 0.81 | 3.41 | 9354 | 618 | 8 | 209 | 0 | 0 | 0 | logfile |
✔ | 7VoJ | 32050 | 2023-11-13 | 2021-10-14 | 3.0 | 3.21 | — | 3.3 | 0.008 | 1.01 | 0.0 | 0.06 | 13.59 | 0.01 | 2.061 | 7.62 | 1.73 | 3.3 | 96.5 | 0.3 | -2.46 | 0.65 | 0.83 | 2.35 | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.62 | 0.00 | 1.924 | 4.63 | 2.02 | 2.9 | 97.1 | 0.0 | 3.11 | 2.16 | 0.60 | 0.82 | 1.75 | 6318 | 800 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6oFF | 20044 | 2023-11-15 | 2019-03-29 | 3.2 | 3.32 | — | 3.3 | 0.009 | 0.83 | 0.0 | 0.04 | 10.88 | 0.01 | 2.147 | 4.73 | 0.00 | 3.9 | 96.1 | 0.0 | -5.21 | 0.59 | 0.85 | 4.52 | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 15.58 | 0.00 | 2.230 | 6.89 | 0.25 | 3.8 | 96.2 | 0.0 | 4.04 | 1.22 | 0.62 | 0.88 | 3.84 | 11016 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |