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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6S05 | 10071 | 2024-03-15 | 2019-06-13 | 3.9 | 3.99 | — | 3.9 | 0.008 | 1.03 | 5.0 | 0.05 | 22.89 | 0.01 | 0.906 | 7.79 | 1.92 | 9.4 | 90.4 | 0.2 | -4.72 | 0.82 | 0.84 | 1.89 | 3.9 | 0.004 | 0.62 | 1.0 | 0.03 | 22.62 | 0.00 | 1.953 | 13.07 | 4.64 | 7.5 | 92.5 | 0.0 | -2.24 | 0.40 | 0.81 | 0.83 | 1.49 | 129144 | 6919 | 53 | 3423 | 218 | 0 | 0 | logfile |
✔ | 5V6P | 8637 | 2024-03-14 | 2017-03-17 | 4.1 | 4.04 | — | 4.1 | 0.015 | 1.37 | 0.0 | 0.08 | 9.65 | 0.01 | 2.463 | 1.41 | 0.00 | 2.6 | 97.0 | 0.4 | 0.18 | 0.40 | 0.58 | — | 4.0 | 0.003 | 0.66 | 0.0 | 0.03 | 12.96 | 0.00 | 2.159 | 11.10 | 0.00 | 2.4 | 97.6 | 0.0 | 3.29 | 1.54 | 0.42 | 0.66 | — | 9194 | 540 | 2 | 0 | 0 | 0 | 4676 | logfile |
✔ | 6WCC | 21606 | 2024-03-15 | 2020-03-30 | 3.24 | 3.27 | — | 3.3 | 0.003 | 0.51 | 0.0 | 0.03 | 15.73 | 0.00 | 2.025 | 4.39 | 2.26 | 0.8 | 99.2 | 0.0 | 1.46 | 0.53 | 0.76 | 1.58 | 3.3 | 0.003 | 0.50 | 0.0 | 0.03 | 16.07 | 0.00 | 2.212 | 7.31 | 3.06 | 2.3 | 97.7 | 0.0 | 4.51 | 0.73 | 0.51 | 0.78 | 1.73 | 11629 | 734 | 6 | 0 | 5 | 12 | 5908 | logfile |
✔ | 8EQU | 28546 | 2024-03-10 | 2022-10-09 | 2.8 | 3.03 | 2.80 | 3.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.51 | 0.00 | 2.317 | 8.25 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.64 | 0.76 | 2.12 | 3.0 | 0.003 | 0.63 | 0.0 | 0.03 | 14.49 | 0.00 | 2.123 | 7.75 | 2.10 | 1.9 | 98.1 | 0.0 | 0.20 | 1.09 | 0.68 | 0.83 | 2.31 | 5764 | 542 | 10 | 0 | 318 | 0 | 0 | logfile |
✔ | 7RZT | 24777 | 2024-03-10 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.53 | 0.00 | 2.337 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.28 | 0.23 | 0.80 | 0.83 | 2.93 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ET9 | 28589 | 2024-03-11 | 2022-10-16 | 3.61 | 3.97 | 3.84 | 3.9 | 0.005 | 0.61 | 0.0 | 0.04 | 10.84 | 0.01 | 2.058 | 8.46 | 0.52 | 1.8 | 98.2 | 0.0 | 1.38 | 0.46 | 0.67 | 2.05 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 14.58 | 0.00 | 1.929 | 9.24 | 2.62 | 3.3 | 96.7 | 0.0 | 0.98 | 4.54 | 0.47 | 0.69 | 2.05 | 7685 | 517 | 1 | 0 | 1 | 0 | 3796 | logfile |
✔ | 6MHX | 9121 | 2024-03-21 | 2018-09-18 | 4.0 | 4.20 | 3.97 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 7.56 | 0.00 | 2.077 | 6.96 | 0.30 | 3.1 | 96.9 | 0.0 | -2.52 | 0.77 | 0.76 | — | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 12.23 | 0.00 | 1.950 | 10.88 | 1.48 | 5.4 | 94.6 | 0.0 | 2.24 | 0.98 | 0.78 | 0.78 | — | 31612 | 2436 | 4 | 0 | 0 | 0 | 14648 | logfile |
✔ | 7XSN | 33428 | 2024-03-11 | 2022-05-14 | 3.01 | 4.02 | 3.04 | 3.2 | 0.013 | 1.06 | 0.0 | 0.05 | 25.09 | 0.01 | 2.252 | 5.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.84 | — | 3.2 | 0.006 | 0.63 | 0.0 | 0.03 | 24.73 | 0.00 | 2.107 | 21.06 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.26 | 0.92 | 0.88 | — | 8279 | 0 | 1 | 387 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2024-03-15 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.19 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.62 | 0.0 | 0.03 | 28.61 | 0.00 | 2.190 | 9.62 | 2.17 | 1.7 | 98.3 | 0.0 | 1.03 | 1.17 | 0.75 | 0.82 | 2.23 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7RZU | 24778 | 2024-03-10 | 2021-08-27 | 2.3 | 2.32 | — | 2.0 | 0.006 | 0.50 | 0.0 | 0.04 | 13.61 | 0.01 | 2.212 | 7.50 | 0.00 | 2.9 | 97.1 | 0.0 | 1.69 | 0.77 | 0.78 | 1.84 | 2.0 | 0.003 | 0.54 | 0.0 | 0.03 | 15.53 | 0.00 | 2.199 | 7.70 | 2.11 | 0.0 | 100.0 | 0.0 | 5.17 | 0.52 | 0.80 | 0.81 | 1.81 | 2439 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y00 | 33536 | 2024-03-15 | 2022-06-03 | 3.96 | 4.73 | 3.89 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 27.46 | 0.00 | 1.717 | 12.80 | 0.31 | 1.5 | 98.5 | 0.0 | 0.85 | 0.90 | 0.80 | 0.94 | 3.9 | 0.005 | 0.67 | 0.0 | 0.03 | 28.74 | 0.00 | 2.108 | 13.66 | 1.89 | 2.0 | 98.0 | 0.0 | 2.46 | 2.01 | 0.93 | 0.87 | 1.07 | 12411 | 762 | 10 | 310 | 0 | 0 | 0 | logfile |
✔ | 7XQB | 33392 | 2024-03-25 | 2022-05-07 | 3.0 | 3.07 | 2.98 | 3.1 | 0.006 | 1.12 | 0.0 | 0.04 | 18.74 | 0.00 | 2.280 | 2.77 | 1.10 | 2.0 | 98.0 | 0.0 | 2.22 | 0.66 | 0.87 | 3.09 | 3.1 | 0.003 | 0.59 | 0.0 | 0.03 | 16.03 | 0.00 | 2.173 | 7.03 | 1.01 | 4.1 | 95.9 | 0.0 | 2.23 | 0.84 | 0.65 | 0.88 | 3.01 | 42852 | 2424 | 24 | 0 | 168 | 0 | 20040 | logfile |
✔ | 7RZR | 24775 | 2024-03-10 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.17 | 0.00 | 2.285 | 5.04 | 0.35 | 0.0 | 100.0 | 0.0 | 6.38 | 0.31 | 0.82 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E4M | 27892 | 2024-03-25 | 2022-08-18 | 3.44 | 3.74 | 3.39 | 3.6 | 0.003 | 0.45 | 0.0 | 0.03 | 10.73 | 0.00 | 2.248 | 6.37 | 0.00 | 1.9 | 98.1 | 0.0 | 3.12 | 0.66 | 0.74 | 1.61 | 3.6 | 0.003 | 0.50 | 0.0 | 0.03 | 13.77 | 0.00 | 2.093 | 8.56 | 2.35 | 3.1 | 96.9 | 0.0 | 2.44 | 0.85 | 0.67 | 0.76 | 1.96 | 49595 | 3524 | 8 | 0 | 12 | 0 | 23500 | logfile |
✔ | 6R0C | 4692 | 2024-03-15 | 2019-03-12 | 4.2 | 4.33 | 4.09 | 4.2 | 0.008 | 0.86 | 0.0 | 0.05 | 27.86 | 0.01 | 1.900 | 5.06 | 0.00 | 3.1 | 96.9 | 0.0 | -2.35 | 0.88 | 0.85 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.03 | 27.56 | 0.00 | 2.103 | 10.96 | 0.16 | 3.4 | 96.6 | 0.0 | 1.92 | 0.78 | 0.87 | 0.85 | — | 11737 | 747 | 11 | 284 | 1 | 0 | 0 | logfile |
✔ | 7CRo | 30453 | 2024-03-20 | 2020-08-14 | 3.75 | 3.86 | — | 3.8 | 0.006 | 0.74 | 1.0 | 0.04 | 27.72 | 0.00 | 1.421 | 10.71 | 1.45 | 8.7 | 91.3 | 0.0 | -5.38 | 0.78 | 0.83 | 2.26 | 3.8 | 0.003 | 0.56 | 0.0 | 0.03 | 27.65 | 0.00 | 2.233 | 6.85 | 0.48 | 4.8 | 95.2 | 0.0 | -1.88 | 0.52 | 0.79 | 0.83 | 1.22 | 14797 | 999 | 11 | 336 | 4 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2024-03-19 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 23.51 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 23.85 | 0.00 | 1.744 | 53.30 | 5.24 | 12.4 | 85.4 | 2.1 | -3.11 | 1.58 | 0.58 | 0.79 | 1.19 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 5U9G | 8522 | 2024-03-01 | 2016-12-16 | 3.2 | 4.54 | — | 3.3 | 0.006 | 0.92 | 0.0 | 0.08 | 21.99 | 0.01 | 2.111 | 12.37 | 0.93 | 10.6 | 88.5 | 1.0 | -5.08 | 0.89 | 0.79 | 1.20 | 3.4 | 0.005 | 0.69 | 0.0 | 0.03 | 23.04 | 0.00 | 1.809 | 21.51 | 3.09 | 9.4 | 90.4 | 0.2 | -1.67 | 1.89 | 0.95 | 0.91 | 1.11 | 152649 | 6561 | 70 | 4729 | 349 | 0 | 0 | logfile |
✔ | 8G6Q | 29778 | 2024-03-15 | 2023-02-15 | 3.41 | 3.90 | 3.43 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 27.96 | 0.00 | 2.164 | 9.72 | 0.14 | 3.2 | 96.8 | 0.0 | 2.17 | 0.86 | 0.83 | 0.81 | 3.6 | 0.004 | 0.59 | 0.0 | 0.03 | 27.89 | 0.00 | 2.177 | 10.34 | 2.46 | 4.0 | 96.0 | 0.0 | 2.10 | 0.34 | 0.88 | 0.85 | 0.98 | 12485 | 825 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 8CZi | 27098 | 2024-03-10 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.003 | 0.38 | 0.0 | 0.03 | 15.19 | 0.00 | 2.148 | 5.65 | 1.35 | 0.0 | 100.0 | 0.0 | 5.64 | 0.85 | 0.82 | 0.84 | 1.98 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |