Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CXM	27060	2023-04-20	2022-05-21	3.21	3.69	3.21	3.6	0.003	0.50	0.0	0.03	14.84	0.00	2.093	8.38	0.06	4.1	95.9	0.0	3.68	0.56	0.87	1.34	3.5	0.003	0.53	0.0	0.03	16.26	0.00	2.108	6.36	0.15	3.9	96.1	0.0	4.62	1.14	0.58	0.89	1.41	109560	14685	55	0	0	0	0	logfile
✔	6E0P	8949	2023-04-23	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.61	0.0	0.03	26.81	0.00	2.163	7.99	1.17	4.0	96.0	0.0	1.43	0.51	0.79	0.87	3.29	15567	1220	12	290	0	0	0	logfile
✔	7TRD	26086	2023-04-22	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	16.47	0.00	2.206	7.50	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	3.4	0.003	0.52	0.0	0.03	16.56	0.00	2.174	5.22	0.25	4.1	95.9	0.0	1.31	0.42	0.80	0.85	2.31	12240	934	3	224	0	0	0	logfile
✔	7PFV	13381	2023-04-23	2021-08-12	4.4	7.43	—	4.1	0.006	0.86	0.0	0.05	30.47	0.01	2.249	7.20	0.00	1.2	98.8	0.0	0.36	0.91	0.85	—	4.1	0.004	0.62	0.0	0.03	29.87	0.00	2.189	16.44	0.00	1.9	98.1	0.0	2.32	0.62	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	6Y5E	10695	2023-04-23	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.82	0.01	2.429	0.83	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.003	0.58	0.0	0.03	26.03	0.00	2.066	7.28	0.21	1.9	98.1	0.0	2.01	0.64	0.84	0.85	2.41	15292	1120	18	306	9	0	0	logfile
✔	7XGR	33187	2023-04-20	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile
✔	6TMi	10522	2023-04-21	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	9.16	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.004	0.64	0.0	0.03	17.16	0.00	2.134	9.37	0.19	7.8	92.2	0.0	0.56	1.46	0.53	0.80	1.70	9606	605	5	0	0	0	4842	logfile
✔	6PCR	20305	2023-04-27	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✔	7S38	24819	2023-04-23	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.52	0.01	2.233	2.62	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.38	0.00	2.095	8.30	0.00	2.5	97.5	0.0	0.46	1.31	0.88	0.87	2.70	13987	1353	4	138	1	0	0	logfile
✔	6PC6	20297	2023-04-27	2019-06-16	2.5	3.08	—	2.9	0.008	0.56	0.0	0.02	13.08	0.03	1.930	2.91	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.005	0.67	0.0	0.03	14.86	0.01	1.949	7.94	3.68	6.6	93.2	0.2	-0.81	0.91	0.74	0.90	4.30	72127	963	8	3015	1	0	0	logfile
✔	6NoG	0468	2023-04-25	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	6TYi	20583	2023-04-21	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.003	0.54	0.0	0.03	17.18	0.00	2.214	6.38	0.32	2.6	97.4	0.0	3.07	1.18	0.61	0.77	1.34	9184	1186	11	0	4	0	0	logfile
✔	7X57	33010	2023-04-21	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.98	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.003	0.64	0.0	0.03	29.85	0.00	2.269	13.03	0.99	2.6	97.4	0.0	2.84	0.69	0.83	0.79	1.19	9767	595	10	242	0	0	0	logfile
✔	7VBM	31882	2023-04-21	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.60	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.56	0.0	0.03	29.09	0.00	2.155	7.00	0.18	1.7	98.3	0.0	2.70	0.31	0.68	0.80	1.93	10475	677	10	252	0	0	0	logfile
✔	7XZY	33534	2023-04-22	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	28.02	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.004	0.70	0.0	0.03	28.73	0.00	2.040	9.85	0.63	3.6	96.4	0.0	1.77	2.26	0.92	0.88	0.97	12821	762	10	330	0	0	0	logfile
✔	7ZF1	14694	2023-04-21	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.56	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.55	0.0	0.03	16.86	0.00	1.988	10.78	0.00	3.2	96.8	0.0	1.54	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	8CZi	27098	2023-04-19	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	7R6K	24280	2023-04-25	2021-06-22	3.17	3.23	3.15	3.2	0.003	0.52	0.0	0.04	14.70	0.00	2.200	8.68	0.00	4.3	95.7	0.0	0.58	0.73	0.79	2.37	3.2	0.002	0.50	0.0	0.03	15.88	0.00	2.182	7.38	0.16	4.5	95.5	0.0	1.36	0.41	0.73	0.81	2.16	20543	2153	16	152	0	0	0	logfile
✔	8EQU	28546	2023-04-20	2022-10-09	2.8	3.03	2.80	3.0	0.004	0.79	0.0	0.04	12.39	0.00	2.317	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.003	0.61	0.0	0.03	14.52	0.00	2.138	7.45	3.04	1.7	98.3	0.0	0.23	1.09	0.68	0.83	2.86	5764	542	10	0	318	0	0	logfile
✔	7MVU	24056	2023-04-27	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile

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