Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K63	22687	2022-12-14	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	7.07	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.58	0.0	0.03	27.53	0.00	2.214	8.18	0.00	2.9	97.1	0.0	1.66	0.39	0.78	0.84	2.71	18330	1298	13	394	0	0	0	logfile
✔	7CRo	30453	2022-12-15	2020-08-14	3.75	3.86	—	3.8	0.006	0.74	1.0	0.04	27.64	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.004	0.58	0.0	0.03	28.01	0.00	2.197	6.89	0.48	5.9	94.1	0.0	-2.62	0.49	0.79	0.84	1.24	14797	999	11	336	4	0	0	logfile
✔	7RUG	24705	2022-12-11	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.002	0.47	0.0	0.03	13.18	0.00	1.968	13.09	0.00	1.6	98.4	0.0	3.44	1.24	0.60	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	7VVU	32148	2022-12-16	2021-11-09	3.4	4.41	—	3.4	0.006	0.71	0.0	0.04	24.88	0.00	2.216	8.89	0.31	1.5	98.5	0.0	1.82	0.88	0.80	1.79	3.4	0.003	0.60	0.0	0.03	25.57	0.00	2.163	11.11	0.00	2.0	98.0	0.0	2.41	1.30	0.89	0.84	1.65	19374	1466	16	359	1	0	0	logfile
✔	7UT4	26754	2022-12-20	2022-04-26	3.9	4.06	—	4.0	0.006	0.93	0.0	0.04	18.88	0.01	2.087	5.16	0.53	5.0	94.9	0.0	-0.40	0.44	0.69	1.12	4.0	0.003	0.56	0.0	0.03	19.05	0.00	2.010	11.42	0.57	5.8	94.1	0.0	1.06	2.39	0.49	0.73	1.21	39740	2448	2	0	0	0	20092	logfile
✔	7PGP	13391	2022-12-16	2021-08-15	3.1	3.32	3.11	3.2	0.005	0.48	0.0	0.04	11.53	0.00	1.908	4.67	0.81	1.8	98.2	0.0	-1.55	0.71	0.80	2.56	3.2	0.003	0.53	0.0	0.03	14.10	0.00	1.837	4.60	0.19	3.7	96.3	0.1	1.15	0.67	0.76	0.85	1.78	28506	1788	2	0	0	0	14363	logfile
✔	7BYN	30246	2022-12-13	2020-04-23	3.3	3.57	—	3.6	0.011	1.31	0.0	0.05	20.29	0.01	1.949	24.44	16.39	2.9	96.9	0.2	-0.58	0.48	0.52	0.70	3.6	0.003	0.64	0.0	0.03	17.62	0.00	2.166	8.76	0.24	1.4	98.6	0.1	2.08	1.49	0.58	0.79	0.67	16349	2000	12	0	8	0	0	logfile
✔	6TMi	10522	2022-12-12	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	9.16	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.003	0.60	0.0	0.03	17.17	0.00	2.124	8.74	0.58	5.9	94.1	0.0	0.90	1.45	0.53	0.79	1.65	9606	605	5	0	0	0	4842	logfile
✔	7CCQ	30339	2022-12-13	2020-06-17	3.8	3.94	—	3.8	0.010	1.03	0.0	0.06	24.87	0.01	2.235	4.83	0.00	4.3	95.7	0.0	-2.89	0.84	0.83	2.29	3.8	0.003	0.64	0.0	0.03	26.79	0.00	2.078	13.51	0.42	4.0	96.0	0.0	1.38	1.28	0.83	0.83	1.37	14857	1101	11	294	0	0	0	logfile
✔	7CRR	30457	2022-12-15	2020-08-14	3.48	3.61	—	3.5	0.007	0.75	0.0	0.04	27.67	0.00	2.037	12.56	1.56	10.2	89.8	0.0	-5.14	0.74	0.82	2.82	3.5	0.004	0.58	0.0	0.03	27.91	0.00	2.210	8.57	0.36	6.4	93.6	0.0	-1.62	0.42	0.78	0.87	2.41	14839	1002	11	336	4	0	0	logfile
✔	7K6Q	22692	2022-12-13	2020-09-21	3.1	3.63	3.21	3.5	0.006	0.78	0.0	0.04	24.92	0.01	2.108	3.43	0.00	2.3	97.7	0.0	1.37	0.81	0.80	3.65	3.5	0.004	0.55	0.0	0.03	26.28	0.00	2.166	10.16	0.10	3.2	96.8	0.0	1.12	0.36	0.81	0.83	2.73	15578	1229	13	292	1	0	0	logfile
✔	7K61	22686	2022-12-14	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.29	0.00	2.130	6.03	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.005	0.57	0.0	0.03	27.83	0.00	2.108	7.37	0.87	2.1	97.9	0.0	2.01	0.35	0.86	0.88	3.53	17723	1222	12	394	0	0	0	logfile
✔	7K5Y	22684	2022-12-14	2020-09-17	2.76	3.18	—	3.1	0.004	0.65	0.0	0.04	27.13	0.00	2.108	7.06	0.00	1.4	98.6	0.0	1.74	0.77	0.81	4.49	3.1	0.004	0.56	0.0	0.03	27.54	0.00	2.150	6.64	1.37	2.0	98.0	0.0	2.04	1.13	0.78	0.85	3.89	18258	1297	13	394	0	0	0	logfile
✔	7D60	30586	2022-12-15	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.44	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.58	0.0	0.03	17.47	0.00	2.202	3.67	1.97	2.3	97.7	0.0	1.33	0.53	0.69	0.83	2.00	26664	3168	22	0	55	0	0	logfile
✔	6YE4	10789	2022-12-12	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.002	0.48	0.0	0.03	16.29	0.00	2.383	4.86	0.00	2.3	97.7	0.0	4.08	0.94	0.65	0.85	1.25	9140	1180	10	0	5	0	0	logfile
✔	7K60	22685	2022-12-14	2020-09-17	3.12	3.33	—	3.2	0.004	0.64	0.0	0.04	26.72	0.00	2.175	9.38	0.09	2.0	98.0	0.0	0.43	0.74	0.73	1.70	3.2	0.003	0.59	0.0	0.03	27.28	0.00	2.146	10.85	0.63	2.5	97.5	0.0	1.09	0.55	0.75	0.77	1.43	18330	1298	13	394	0	0	0	logfile
✔	6Y5E	10695	2022-12-13	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.82	0.01	2.429	0.98	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.004	0.59	0.0	0.03	26.21	0.00	2.038	6.85	0.21	2.0	98.0	0.0	1.95	0.63	0.84	0.85	2.55	15292	1120	18	306	9	0	0	logfile
✔	7E4T	30987	2022-12-14	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	13.89	0.00	2.278	6.59	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.002	0.47	0.0	0.03	16.68	0.00	2.181	5.83	3.34	1.2	98.8	0.0	2.36	1.24	0.70	0.85	3.19	22276	2656	8	0	24	0	0	logfile
✔	7KDT	22829	2022-12-11	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.004	0.55	0.0	0.03	16.91	0.00	2.224	6.33	0.23	1.8	98.2	0.0	2.64	2.11	0.68	0.80	2.66	8064	505	2	0	0	0	4042	logfile
✔	7JGG	22326	2022-12-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.54	0.0	0.03	12.79	0.00	1.898	99.07	0.00	5.9	94.1	0.0	0.89	1.75	0.67	0.71	—	4210	506	1	0	0	0	28	logfile

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