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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8BXG | 16318 | 2024-03-17 | 2022-12-08 | 3.16 | 3.34 | 3.18 | 3.3 | 0.003 | 0.54 | 0.0 | 0.03 | 19.91 | 0.00 | 2.245 | 4.29 | 0.12 | 7.4 | 92.6 | 0.0 | 1.42 | 0.66 | 0.81 | 1.88 | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 19.10 | 0.00 | 2.071 | 4.69 | 2.53 | 6.9 | 93.1 | 0.0 | 1.02 | 0.19 | 0.67 | 0.81 | 1.94 | 17301 | 1093 | 4 | 0 | 6 | 0 | 8796 | logfile |
✔ | 8ETV | 28600 | 2024-03-11 | 2022-10-17 | 3.16 | 3.01 | 3.36 | 2.0 | 0.006 | 0.87 | 0.0 | 0.05 | 28.21 | 0.01 | 2.305 | 2.83 | 0.00 | 2.3 | 97.7 | 0.0 | -0.99 | 0.80 | 0.77 | 1.76 | 2.0 | 0.004 | 0.63 | 0.0 | 0.03 | 28.75 | 0.00 | 2.106 | 12.78 | 4.35 | 2.0 | 98.0 | 0.0 | 2.14 | 0.45 | 0.81 | 0.80 | 1.23 | 8682 | 524 | 8 | 220 | 0 | 0 | 0 | logfile |
✔ | 6oFG | 20045 | 2024-03-15 | 2019-03-29 | 2.9 | 3.01 | — | 3.0 | 0.008 | 0.75 | 0.0 | 0.04 | 10.04 | 0.01 | 2.263 | 5.31 | 0.00 | 3.9 | 96.1 | 0.0 | -6.09 | 0.65 | 0.85 | 4.64 | 3.0 | 0.002 | 0.52 | 0.0 | 0.03 | 14.16 | 0.00 | 2.133 | 7.52 | 4.02 | 3.4 | 96.6 | 0.0 | 5.02 | 0.52 | 0.66 | 0.87 | 3.09 | 10980 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Soi | 40658 | 2024-03-18 | 2023-04-28 | 4.2 | 3.78 | — | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 15.47 | 0.00 | 2.090 | 9.52 | 0.09 | 3.2 | 96.7 | 0.1 | 1.61 | 0.66 | 0.64 | — | 3.6 | 0.003 | 0.54 | 0.0 | 0.03 | 14.19 | 0.00 | 2.031 | 9.18 | 0.09 | 3.6 | 96.3 | 0.2 | 1.88 | 0.53 | 0.66 | 0.63 | — | 20708 | 1276 | 4 | 0 | 0 | 0 | 10465 | logfile |
✔ | 8FKS | 29255 | 2024-03-11 | 2022-12-21 | 2.88 | 3.23 | 3.00 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 20.51 | 0.00 | 1.885 | 2.38 | 0.01 | 1.2 | 98.8 | 0.0 | 1.20 | 0.75 | 0.81 | 3.31 | 3.1 | 0.004 | 0.54 | 0.0 | 0.03 | 20.66 | 0.00 | 1.898 | 5.78 | 1.35 | 2.0 | 98.0 | 0.0 | 1.51 | 1.57 | 0.77 | 0.85 | 2.82 | 108693 | 8026 | 58 | 2046 | 64 | 0 | 0 | logfile |
✔ | 7Y6P | 33645 | 2024-03-21 | 2022-06-21 | 3.3 | 3.20 | 3.21 | 3.3 | 0.005 | 0.66 | 0.0 | 0.04 | 15.54 | 0.00 | 1.892 | 8.44 | 0.00 | 2.3 | 97.7 | 0.0 | 3.78 | 0.77 | 0.89 | 3.18 | 3.3 | 0.005 | 0.69 | 0.0 | 0.03 | 16.74 | 0.00 | 2.089 | 3.78 | 0.94 | 2.1 | 97.9 | 0.0 | 4.33 | 0.18 | 0.76 | 0.90 | 2.36 | 31428 | 3772 | 48 | 0 | 60 | 0 | 0 | logfile |
✔ | 7Z4H | 14497 | 2024-03-17 | 2022-03-03 | 3.49 | 4.59 | 3.66 | 3.8 | 0.003 | 0.45 | 0.0 | 0.03 | 16.01 | 0.00 | 2.043 | 9.94 | 1.25 | 2.0 | 98.0 | 0.0 | 1.67 | 0.90 | 0.83 | 1.71 | 3.8 | 0.002 | 0.51 | 0.0 | 0.03 | 17.25 | 0.00 | 2.170 | 12.24 | 1.42 | 2.3 | 97.7 | 0.0 | 1.56 | 1.20 | 0.91 | 0.85 | 1.74 | 13900 | 1334 | 4 | 142 | 0 | 0 | 0 | logfile |
✔ | 8FKW | 29259 | 2024-03-19 | 2022-12-21 | 2.5 | 2.85 | 2.62 | 2.8 | 0.003 | 0.53 | 0.0 | 0.03 | 19.82 | 0.00 | 1.946 | 1.75 | 0.01 | 1.1 | 98.9 | 0.0 | 2.03 | 0.80 | 0.82 | 3.78 | 2.8 | 0.002 | 0.51 | 0.0 | 0.03 | 20.32 | 0.00 | 1.949 | 5.42 | 1.16 | 1.6 | 98.4 | 0.0 | 1.86 | 1.15 | 0.81 | 0.86 | 3.25 | 139783 | 10864 | 65 | 2499 | 63 | 0 | 0 | logfile |
✔ | 8FLD | 29275 | 2024-03-25 | 2022-12-21 | 2.58 | 2.89 | 2.64 | 2.9 | 0.009 | 0.83 | 0.0 | 0.04 | 21.82 | 0.03 | 1.041 | 2.28 | 0.00 | 2.1 | 97.9 | 0.0 | -0.07 | 0.86 | 0.86 | 4.32 | 2.9 | 0.004 | 0.70 | 0.0 | 0.03 | 22.11 | 0.01 | 1.053 | 5.54 | 2.01 | 2.1 | 97.9 | 0.0 | 1.04 | 0.45 | 0.86 | 0.88 | 3.66 | 148569 | 8505 | 68 | 3718 | 93 | 0 | 0 | logfile |
✔ | 8P3P | 17389 | 2024-03-18 | 2023-05-18 | 2.5 | 3.25 | 2.58 | 3.0 | 0.003 | 0.63 | 0.0 | 0.03 | 16.19 | 0.00 | 2.267 | 5.98 | 0.86 | 4.1 | 95.9 | 0.0 | 3.26 | 0.76 | 0.89 | 2.76 | 3.0 | 0.003 | 0.64 | 0.0 | 0.03 | 16.50 | 0.00 | 2.331 | 5.68 | 1.40 | 3.6 | 96.4 | 0.0 | 3.90 | 0.21 | 0.73 | 0.86 | 2.54 | 21224 | 2656 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2024-03-14 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.46 | 0.00 | 2.181 | 8.86 | 5.51 | 0.4 | 99.6 | 0.0 | 3.23 | 1.98 | 0.81 | 0.79 | 0.27 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 6XMF | 22257 | 2024-03-11 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 21.16 | 0.00 | 2.246 | 8.60 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 21.65 | 0.00 | 2.143 | 14.52 | 3.97 | 9.8 | 90.2 | 0.0 | -0.65 | 0.46 | 0.72 | 0.77 | 2.59 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 8DFU | 27414 | 2024-03-19 | 2022-06-22 | 3.44 | 3.84 | 3.52 | 3.8 | 0.010 | 0.92 | 0.0 | 1.18 | 31.93 | 0.00 | 2.461 | 3.48 | 0.00 | 1.2 | 98.8 | 0.0 | 1.08 | 0.59 | 0.85 | 1.18 | 3.8 | 0.003 | 0.53 | 0.0 | 0.03 | 29.65 | 0.01 | 2.303 | 5.51 | 0.55 | 1.3 | 98.7 | 0.0 | 4.56 | 1.18 | 0.58 | 0.84 | 0.37 | 22710 | 2520 | 56 | 0 | 60 | 0 | 0 | logfile |
✔ | 6XL0 | 22231 | 2024-03-23 | 2020-06-27 | 3.4 | 3.44 | 3.37 | 3.5 | 0.008 | 0.81 | 0.0 | 0.05 | 12.66 | 0.00 | 2.137 | 9.20 | 0.00 | 3.0 | 97.0 | 0.0 | 0.73 | 0.50 | 0.80 | 1.02 | 3.4 | 0.003 | 0.55 | 0.0 | 0.03 | 15.89 | 0.00 | 2.100 | 7.25 | 2.57 | 2.6 | 97.4 | 0.0 | 3.37 | 1.15 | 0.51 | 0.83 | 1.17 | 38820 | 5420 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T0X | 25584 | 2024-03-24 | 2021-11-30 | 4.4 | 4.45 | — | 4.3 | 0.006 | 0.81 | 0.0 | 0.04 | 13.87 | 0.00 | 2.117 | 45.77 | 0.00 | 1.3 | 98.7 | 0.0 | -0.28 | 0.74 | 0.80 | — | 4.3 | 0.004 | 0.68 | 0.0 | 0.03 | 15.27 | 0.00 | 2.068 | 16.37 | 0.00 | 0.8 | 99.2 | 0.0 | 1.86 | 1.55 | 0.74 | 0.79 | — | 147840 | 17640 | 840 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2024-03-10 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.004 | 0.55 | 0.0 | 0.03 | 10.92 | 0.00 | 1.988 | 9.72 | 0.00 | 1.7 | 98.3 | 0.0 | 2.09 | 1.49 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 7RX5 | 24725 | 2024-03-14 | 2021-08-21 | 3.4 | 3.65 | — | 3.6 | 0.002 | 0.25 | 0.0 | 0.03 | 11.98 | 0.00 | 2.288 | 5.05 | 0.00 | 0.0 | 100.0 | 0.0 | 4.54 | 0.70 | 0.85 | 3.58 | 3.6 | 0.002 | 0.33 | 0.0 | 0.03 | 13.43 | 0.00 | 2.264 | 5.87 | 0.00 | 0.0 | 100.0 | 0.0 | 5.24 | 0.23 | 0.71 | 0.87 | 2.92 | 9120 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZJ2 | 14739 | 2024-03-10 | 2022-04-08 | 3.32 | 3.56 | — | 3.6 | 0.014 | 2.21 | 0.0 | 0.08 | 15.29 | 0.01 | 2.548 | 0.00 | 0.00 | 2.3 | 97.7 | 0.0 | -3.75 | 0.47 | 0.78 | 4.64 | 3.6 | 0.007 | 0.75 | 0.0 | 0.03 | 16.74 | 0.00 | 2.133 | 17.07 | 8.91 | 3.9 | 96.1 | 0.0 | -3.48 | 1.43 | 0.43 | 0.76 | 4.95 | 3792 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HAM | 34596 | 2024-03-17 | 2022-10-26 | 4.5 | 4.52 | 4.33 | 3.7 | 0.003 | 0.56 | 0.0 | 0.03 | 25.16 | 0.00 | 2.260 | 9.62 | 0.00 | 1.4 | 98.6 | 0.0 | 2.08 | 0.84 | 0.77 | — | 3.7 | 0.003 | 0.59 | 0.0 | 0.03 | 26.47 | 0.00 | 2.202 | 13.46 | 0.00 | 2.1 | 97.9 | 0.0 | 2.15 | 2.21 | 0.87 | 0.84 | — | 17177 | 1288 | 11 | 330 | 0 | 0 | 0 | logfile |
✔ | 8ESR | 24422 | 2024-03-12 | 2022-10-14 | 3.2 | 3.24 | — | 3.0 | 0.002 | 0.47 | 0.0 | 0.03 | 21.68 | 0.00 | 2.118 | 7.71 | 0.28 | 3.0 | 96.9 | 0.1 | 0.71 | 0.76 | 0.74 | 2.20 | 3.0 | 0.002 | 0.52 | 0.0 | 0.03 | 21.26 | 0.00 | 2.101 | 10.03 | 1.95 | 3.3 | 96.6 | 0.1 | 1.22 | 0.34 | 0.77 | 0.77 | 2.05 | 116762 | 9286 | 57 | 2372 | 1 | 0 | 0 | logfile |