Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SQV	25396	2023-11-13	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7SC0	25007	2023-11-15	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.003	0.59	0.0	0.04	14.15	0.00	2.371	1.37	0.54	9.0	90.2	0.8	-0.63	1.49	0.68	0.82	2.11	11638	1419	11	0	0	0	0	logfile
✔	8Q8D	18251	2023-11-14	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	3.0	0.004	0.55	0.0	0.05	16.73	0.00	2.333	1.41	0.76	1.4	98.6	0.0	-1.23	1.65	0.39	0.87	5.95	7074	456	6	0	0	0	3606	logfile
✔	7QV6	14168	2023-11-13	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.39	0.0	0.06	11.93	0.00	2.389	1.45	0.00	0.0	100.0	0.0	0.74	0.46	0.40	0.86	5.96	4842	306	18	0	0	0	2556	logfile
✔	6SH4	10193	2023-11-15	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.69	0.0	0.04	4.47	0.00	2.243	1.49	0.00	7.0	92.8	0.2	0.09	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	8Q27	18070	2023-11-14	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.002	0.54	0.0	0.05	17.00	0.00	2.208	1.57	0.51	2.5	97.5	0.0	-1.37	1.20	0.34	0.88	7.21	7002	453	6	0	0	0	3567	logfile
✔	7UXU	26862	2023-11-14	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	14.12	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.002	0.52	0.0	0.04	16.52	0.00	2.133	1.60	0.62	1.7	98.3	0.0	0.38	1.29	0.54	0.86	4.10	8776	536	8	0	4	0	4268	logfile
✔	8oQ7	17107	2023-11-16	2023-04-11	2.2	2.13	2.08	2.2	0.009	0.90	0.0	0.09	11.00	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.004	0.66	0.0	0.04	14.48	0.00	2.108	1.61	1.33	2.1	97.9	0.0	2.06	1.02	0.73	0.86	5.76	14702	1680	15	0	57	505	0	logfile
✔	7LiK	23381	2023-11-18	2021-01-27	2.91	3.15	—	3.2	0.007	0.93	0.0	0.06	14.31	0.01	2.239	2.52	3.02	6.8	93.2	0.0	-1.80	0.79	0.86	3.33	3.2	0.005	0.77	0.0	0.05	16.30	0.01	2.318	1.66	2.51	7.1	92.9	0.0	-1.17	0.25	0.80	0.88	2.68	130800	15900	60	0	60	0	0	logfile
✔	8Q9i	18282	2023-11-13	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	17.83	0.00	2.169	1.76	0.00	0.5	99.5	0.0	-1.49	4.60	0.38	0.87	7.68	3411	219	3	0	0	0	1740	logfile
✔	8FMY	29300	2023-11-14	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.417	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.002	0.56	0.0	0.04	14.14	0.00	2.354	1.76	0.73	3.2	96.8	0.0	1.03	1.49	0.83	0.83	3.32	9597	1260	3	0	0	0	0	logfile
✔	8oRG	17123	2023-11-13	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.57	0.0	0.05	17.00	0.00	2.261	1.77	2.63	1.6	98.4	0.0	-2.71	1.18	0.37	0.83	4.10	3966	258	3	0	0	0	2025	logfile
✔	8E32	27854	2023-11-15	2022-08-16	2.35	2.96	2.64	2.8	0.006	0.51	0.0	0.03	12.84	0.02	2.005	1.20	0.74	4.6	95.4	0.0	0.03	0.74	0.91	5.35	2.8	0.005	0.63	0.0	0.04	13.96	0.01	1.935	1.77	1.17	5.4	94.6	0.0	-0.60	0.26	0.70	0.90	5.47	115899	1179	11	3016	2	1	41852	logfile
✔	8E48	27883	2023-11-15	2022-08-17	2.27	2.95	2.47	2.8	0.005	0.52	0.0	0.03	12.68	0.02	1.808	1.21	0.53	4.6	95.4	0.0	0.36	0.69	0.84	3.07	2.7	0.005	0.72	0.0	0.04	13.95	0.01	1.775	1.78	1.59	6.3	93.6	0.1	-0.67	0.60	0.71	0.90	5.13	115959	1179	11	3016	1	0	41918	logfile
✔	8H3E	34465	2023-11-19	2022-10-08	3.06	3.44	3.40	3.3	0.004	0.51	0.0	0.04	16.69	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.006	0.70	0.0	0.05	16.95	0.00	2.119	1.79	0.07	6.2	93.8	0.0	-1.99	0.90	0.81	0.89	2.79	24957	3159	6	0	18	0	0	logfile
✔	6RRS	4989	2023-11-21	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.84	0.0	0.00	7.15	0.00	2.195	1.79	0.00	15.0	85.0	0.0	-1.14	2.03	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	8Q8C	18250	2023-11-14	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.56	0.0	0.05	16.18	0.00	2.145	1.81	0.27	1.4	98.6	0.0	-1.06	1.98	0.39	0.90	7.60	6618	429	6	0	0	0	3372	logfile
✔	7UL5	26592	2023-11-13	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.33	0.00	2.337	1.84	0.37	1.7	98.3	0.0	2.87	0.30	0.64	0.86	3.19	2773	371	2	0	0	0	0	logfile
✔	8QCP	18331	2023-11-14	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.003	0.58	0.0	0.05	15.97	0.00	2.209	1.86	0.00	3.9	96.1	0.0	-2.06	3.54	0.35	0.85	5.32	7002	453	6	0	0	0	3567	logfile
✔	8EL7	28223	2023-11-13	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.46	0.0	0.04	14.99	0.00	2.314	1.88	1.74	2.2	97.8	0.0	0.68	0.27	0.58	0.81	2.13	4562	604	2	0	0	5	0	logfile

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