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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7S8N | 24898 | 2023-07-04 | 2021-09-18 | 2.9 | 2.20 | 2.92 | 2.1 | 0.012 | 0.90 | 0.0 | 0.06 | 13.04 | 0.01 | 2.202 | 4.10 | 0.00 | 5.1 | 94.9 | 0.0 | -0.33 | 0.79 | 0.80 | 3.96 | 2.1 | 0.004 | 0.60 | 0.0 | 0.04 | 15.91 | 0.00 | 2.215 | 3.02 | 1.47 | 3.2 | 96.8 | 0.0 | 0.80 | 1.01 | 0.82 | 0.83 | 2.92 | 8154 | 1090 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7R5M | 14331 | 2023-07-06 | 2022-02-11 | 3.3 | 3.09 | 3.20 | 3.2 | 0.006 | 0.94 | 0.0 | 0.06 | 14.64 | 0.00 | 2.411 | 1.26 | 0.80 | 4.6 | 95.4 | 0.0 | -0.79 | 0.70 | 0.80 | 2.46 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 16.00 | 0.00 | 2.111 | 3.04 | 0.08 | 1.6 | 98.4 | 0.0 | 1.73 | 1.36 | 0.70 | 0.86 | 2.07 | 11295 | 1491 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M05 | 23609 | 2023-07-04 | 2021-03-10 | 2.39 | 2.66 | 2.49 | 2.6 | 0.013 | 0.89 | 0.0 | 0.06 | 14.64 | 0.01 | 2.064 | 3.66 | 0.50 | 6.9 | 92.3 | 0.8 | -3.01 | 0.75 | 0.81 | 4.52 | 2.6 | 0.004 | 0.63 | 0.0 | 0.05 | 16.24 | 0.00 | 2.046 | 3.05 | 1.19 | 3.6 | 96.3 | 0.1 | 0.16 | 1.27 | 0.79 | 0.84 | 4.23 | 57152 | 3636 | 12 | 0 | 4 | 0 | 28188 | logfile |
✔ | 8GV8 | 34287 | 2023-07-04 | 2022-09-14 | 3.08 | 3.29 | 3.09 | 3.3 | 0.019 | 1.93 | 51.0 | 0.09 | 14.99 | 0.01 | 1.614 | 6.04 | 3.97 | 5.6 | 93.7 | 0.7 | -0.32 | 0.63 | 0.82 | 2.59 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.32 | 0.01 | 2.259 | 3.05 | 0.23 | 2.4 | 97.6 | 0.0 | 1.13 | 2.29 | 0.60 | 0.82 | 2.57 | 8161 | 1027 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7oD3 | 12818 | 2023-07-11 | 2021-04-28 | 2.8 | 2.59 | 3.00 | 2.7 | 0.004 | 0.61 | 0.0 | 0.05 | 14.00 | 0.00 | 1.953 | 2.55 | 0.23 | 4.8 | 95.2 | 0.0 | -1.05 | 0.73 | 0.81 | 3.95 | 2.7 | 0.007 | 0.78 | 0.0 | 0.05 | 16.38 | 0.01 | 2.113 | 3.07 | 2.32 | 5.5 | 94.5 | 0.0 | -0.87 | 0.30 | 0.75 | 0.85 | 3.90 | 24222 | 3036 | 6 | 0 | 36 | 0 | 0 | logfile |
✔ | 8FHP | 29098 | 2023-07-04 | 2022-12-14 | 3.04 | 3.38 | 3.13 | 3.3 | 0.009 | 0.80 | 0.0 | 0.05 | 13.08 | 0.01 | 2.227 | 5.38 | 0.39 | 3.8 | 96.2 | 0.0 | -1.88 | 0.61 | 0.85 | 2.63 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 15.04 | 0.00 | 2.254 | 3.07 | 0.39 | 2.5 | 97.5 | 0.0 | 0.71 | 0.34 | 0.56 | 0.84 | 2.14 | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7MQE | 23944 | 2023-07-11 | 2021-05-05 | 3.69 | 3.22 | 3.67 | 3.5 | 0.008 | 0.84 | 0.0 | 0.06 | 13.45 | 0.00 | 2.308 | 1.58 | 0.77 | 1.7 | 98.3 | 0.0 | 0.67 | 0.75 | 0.81 | 3.89 | 3.5 | 0.006 | 0.60 | 0.0 | 0.05 | 14.01 | 0.00 | 2.248 | 3.07 | 0.29 | 3.6 | 96.4 | 0.0 | 1.06 | 0.41 | 0.79 | 0.84 | 3.33 | 12163 | 1629 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 8DMY | 27549 | 2023-07-06 | 2022-07-09 | 3.07 | 3.43 | 3.15 | 3.4 | 0.004 | 0.62 | 0.0 | 0.05 | 18.68 | 0.00 | 2.379 | 4.32 | 0.63 | 3.3 | 96.7 | 0.0 | -1.24 | 0.57 | 0.84 | 2.69 | 3.4 | 0.004 | 0.65 | 0.0 | 0.05 | 17.26 | 0.00 | 2.220 | 3.08 | 0.48 | 4.8 | 95.2 | 0.0 | -0.70 | 1.02 | 0.64 | 0.89 | 2.35 | 11796 | 1494 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7PW8 | 13678 | 2023-07-09 | 2021-10-06 | 2.82 | 2.88 | — | 2.9 | 0.005 | 0.75 | 4.0 | 0.16 | 12.38 | 0.00 | 2.086 | 3.97 | 0.18 | 3.4 | 96.6 | 0.0 | 1.21 | 0.74 | 0.85 | 2.97 | 2.9 | 0.004 | 0.56 | 0.0 | 0.04 | 14.71 | 0.00 | 1.963 | 3.09 | 1.71 | 2.9 | 97.1 | 0.0 | 1.55 | 0.42 | 0.75 | 0.89 | 3.11 | 18960 | 2434 | 5 | 0 | 199 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2023-07-03 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.49 | 0.0 | 0.03 | 15.38 | 0.00 | 2.211 | 3.09 | 1.33 | 0.6 | 99.4 | 0.0 | 5.41 | 3.08 | 0.73 | 0.87 | 2.47 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RHX | 24470 | 2023-07-12 | 2021-07-19 | 3.23 | 3.49 | 3.31 | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 20.49 | 0.01 | 2.289 | 1.05 | 0.00 | 2.0 | 98.0 | 0.0 | -0.38 | 0.75 | 0.84 | 2.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 21.99 | 0.00 | 2.124 | 3.10 | 0.00 | 2.9 | 97.1 | 0.0 | 1.42 | 1.07 | 0.76 | 0.87 | 1.58 | 25787 | 1288 | 8 | 168 | 0 | 0 | 12159 | logfile |
✔ | 7ZH2 | 14718 | 2023-07-11 | 2022-04-05 | 2.71 | 2.24 | 2.66 | 2.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.21 | 0.00 | 2.038 | 2.41 | 0.30 | 3.3 | 96.6 | 0.1 | -0.81 | 0.73 | 0.81 | 3.90 | 2.5 | 0.003 | 0.61 | 0.0 | 0.05 | 15.62 | 0.00 | 2.217 | 3.10 | 1.74 | 4.6 | 95.4 | 0.0 | -0.72 | 0.39 | 0.74 | 0.83 | 4.04 | 24419 | 3060 | 9 | 0 | 36 | 0 | 0 | logfile |
✔ | 8ADG | 15362 | 2023-07-11 | 2022-07-08 | 3.0 | 3.31 | 3.06 | 3.3 | 0.006 | 0.62 | 0.0 | 0.04 | 14.03 | 0.00 | 1.941 | 3.67 | 0.00 | 4.0 | 96.0 | 0.0 | 0.24 | 0.64 | 0.82 | 3.73 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.23 | 0.00 | 1.375 | 3.11 | 1.11 | 4.0 | 96.0 | 0.0 | 0.35 | 0.90 | 0.60 | 0.83 | 3.53 | 23183 | 1506 | 6 | 0 | 0 | 0 | 11375 | logfile |
✔ | 8GHV | 40052 | 2023-07-08 | 2023-03-12 | 2.8 | 3.09 | 2.84 | 3.1 | 0.005 | 0.92 | 0.0 | 0.05 | 14.01 | 0.01 | 2.190 | 3.46 | 0.76 | 3.3 | 96.7 | 0.0 | 0.26 | 0.59 | 0.79 | 3.50 | 3.1 | 0.004 | 0.63 | 0.0 | 0.04 | 14.39 | 0.00 | 2.177 | 3.14 | 1.52 | 4.8 | 95.2 | 0.0 | 0.71 | 0.97 | 0.67 | 0.86 | 4.06 | 15874 | 1125 | 6 | 0 | 1 | 0 | 7637 | logfile |
✔ | 8FHQ | 29099 | 2023-07-04 | 2022-12-14 | 2.81 | 3.05 | 2.83 | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.57 | 0.01 | 2.303 | 4.02 | 0.65 | 3.5 | 96.5 | 0.0 | -1.14 | 0.62 | 0.86 | 3.75 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 14.90 | 0.00 | 2.261 | 3.14 | 0.52 | 2.3 | 97.7 | 0.0 | 0.50 | 0.90 | 0.62 | 0.86 | 3.57 | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7S8L | 24896 | 2023-07-04 | 2021-09-18 | 2.45 | 2.08 | 2.46 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 12.22 | 0.00 | 2.238 | 2.45 | 0.00 | 3.5 | 96.5 | 0.0 | 1.27 | 0.81 | 0.80 | 4.28 | 1.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.52 | 0.00 | 2.231 | 3.14 | 1.70 | 3.2 | 96.8 | 0.0 | 1.39 | 0.34 | 0.84 | 0.84 | 3.79 | 8177 | 1096 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ADZ | 11734 | 2023-07-09 | 2020-09-17 | 2.5 | 2.56 | — | 2.5 | 0.015 | 1.54 | 0.0 | 0.09 | 11.19 | 0.01 | 1.343 | 4.44 | 0.08 | 2.0 | 98.0 | 0.0 | -0.11 | 0.64 | 0.85 | 4.72 | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.34 | 0.00 | 2.160 | 3.15 | 1.73 | 2.7 | 97.3 | 0.0 | 0.40 | 0.66 | 0.66 | 0.88 | 4.16 | 67794 | 8508 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P8W | 13256 | 2023-07-08 | 2021-07-23 | 2.2 | 2.34 | — | 2.3 | 0.014 | 1.79 | 4.0 | 0.09 | 14.82 | 0.01 | 2.340 | 1.55 | 0.75 | 3.8 | 96.0 | 0.2 | -1.36 | 0.85 | 0.92 | 6.91 | 2.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.80 | 0.00 | 2.207 | 3.16 | 0.52 | 3.0 | 97.0 | 0.0 | 0.52 | 1.15 | 0.85 | 0.91 | 6.20 | 17668 | 2008 | 12 | 0 | 8 | 1110 | 0 | logfile |
✔ | 8FUZ | 29482 | 2023-07-11 | 2023-01-18 | 2.1 | 2.08 | 2.21 | 2.1 | 0.007 | 0.86 | 0.0 | 0.05 | 17.81 | 0.01 | 2.232 | 4.59 | 1.17 | 2.1 | 97.9 | 0.0 | 0.92 | 0.78 | 0.91 | 5.73 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 17.79 | 0.00 | 2.228 | 3.17 | 1.53 | 1.6 | 98.4 | 0.0 | 0.75 | 0.34 | 0.77 | 0.91 | 5.53 | 24008 | 3120 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 7PBP | 13298 | 2023-07-15 | 2021-08-02 | 3.2 | 3.11 | — | 3.2 | 0.004 | 0.73 | 0.0 | 0.04 | 14.69 | 0.01 | 1.860 | 1.52 | 0.12 | 1.0 | 99.0 | 0.0 | -0.71 | 0.79 | 0.83 | 2.81 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 16.76 | 0.00 | 1.827 | 3.17 | 0.18 | 2.1 | 97.9 | 0.0 | 1.23 | 0.81 | 0.80 | 0.86 | 2.23 | 32077 | 1968 | 16 | 30 | 9 | 0 | 15818 | logfile |