Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S8N	24898	2023-07-04	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.04	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.004	0.60	0.0	0.04	15.91	0.00	2.215	3.02	1.47	3.2	96.8	0.0	0.80	1.01	0.82	0.83	2.92	8154	1090	6	0	1	0	0	logfile
✔	7R5M	14331	2023-07-06	2022-02-11	3.3	3.09	3.20	3.2	0.006	0.94	0.0	0.06	14.64	0.00	2.411	1.26	0.80	4.6	95.4	0.0	-0.79	0.70	0.80	2.46	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.111	3.04	0.08	1.6	98.4	0.0	1.73	1.36	0.70	0.86	2.07	11295	1491	9	0	0	0	0	logfile
✔	7M05	23609	2023-07-04	2021-03-10	2.39	2.66	2.49	2.6	0.013	0.89	0.0	0.06	14.64	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.004	0.63	0.0	0.05	16.24	0.00	2.046	3.05	1.19	3.6	96.3	0.1	0.16	1.27	0.79	0.84	4.23	57152	3636	12	0	4	0	28188	logfile
✔	8GV8	34287	2023-07-04	2022-09-14	3.08	3.29	3.09	3.3	0.019	1.93	51.0	0.09	14.99	0.01	1.614	6.04	3.97	5.6	93.7	0.7	-0.32	0.63	0.82	2.59	3.3	0.003	0.58	0.0	0.04	15.32	0.01	2.259	3.05	0.23	2.4	97.6	0.0	1.13	2.29	0.60	0.82	2.57	8161	1027	4	0	2	0	0	logfile
✔	7oD3	12818	2023-07-11	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.61	0.0	0.05	14.00	0.00	1.953	2.55	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.007	0.78	0.0	0.05	16.38	0.01	2.113	3.07	2.32	5.5	94.5	0.0	-0.87	0.30	0.75	0.85	3.90	24222	3036	6	0	36	0	0	logfile
✔	8FHP	29098	2023-07-04	2022-12-14	3.04	3.38	3.13	3.3	0.009	0.80	0.0	0.05	13.08	0.01	2.227	5.38	0.39	3.8	96.2	0.0	-1.88	0.61	0.85	2.63	3.3	0.003	0.53	0.0	0.04	15.04	0.00	2.254	3.07	0.39	2.5	97.5	0.0	0.71	0.34	0.56	0.84	2.14	7306	950	4	0	4	0	0	logfile
✔	7MQE	23944	2023-07-11	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	13.45	0.00	2.308	1.58	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.006	0.60	0.0	0.05	14.01	0.00	2.248	3.07	0.29	3.6	96.4	0.0	1.06	0.41	0.79	0.84	3.33	12163	1629	16	16	0	0	0	logfile
✔	8DMY	27549	2023-07-06	2022-07-09	3.07	3.43	3.15	3.4	0.004	0.62	0.0	0.05	18.68	0.00	2.379	4.32	0.63	3.3	96.7	0.0	-1.24	0.57	0.84	2.69	3.4	0.004	0.65	0.0	0.05	17.26	0.00	2.220	3.08	0.48	4.8	95.2	0.0	-0.70	1.02	0.64	0.89	2.35	11796	1494	8	0	8	0	0	logfile
✔	7PW8	13678	2023-07-09	2021-10-06	2.82	2.88	—	2.9	0.005	0.75	4.0	0.16	12.38	0.00	2.086	3.97	0.18	3.4	96.6	0.0	1.21	0.74	0.85	2.97	2.9	0.004	0.56	0.0	0.04	14.71	0.00	1.963	3.09	1.71	2.9	97.1	0.0	1.55	0.42	0.75	0.89	3.11	18960	2434	5	0	199	0	0	logfile
✔	6MRT	9212	2023-07-03	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7RHX	24470	2023-07-12	2021-07-19	3.23	3.49	3.31	3.4	0.004	0.79	0.0	0.05	20.49	0.01	2.289	1.05	0.00	2.0	98.0	0.0	-0.38	0.75	0.84	2.43	3.4	0.003	0.60	0.0	0.04	21.99	0.00	2.124	3.10	0.00	2.9	97.1	0.0	1.42	1.07	0.76	0.87	1.58	25787	1288	8	168	0	0	12159	logfile
✔	7ZH2	14718	2023-07-11	2022-04-05	2.71	2.24	2.66	2.5	0.003	0.62	0.0	0.04	13.21	0.00	2.038	2.41	0.30	3.3	96.6	0.1	-0.81	0.73	0.81	3.90	2.5	0.003	0.61	0.0	0.05	15.62	0.00	2.217	3.10	1.74	4.6	95.4	0.0	-0.72	0.39	0.74	0.83	4.04	24419	3060	9	0	36	0	0	logfile
✔	8ADG	15362	2023-07-11	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	8GHV	40052	2023-07-08	2023-03-12	2.8	3.09	2.84	3.1	0.005	0.92	0.0	0.05	14.01	0.01	2.190	3.46	0.76	3.3	96.7	0.0	0.26	0.59	0.79	3.50	3.1	0.004	0.63	0.0	0.04	14.39	0.00	2.177	3.14	1.52	4.8	95.2	0.0	0.71	0.97	0.67	0.86	4.06	15874	1125	6	0	1	0	7637	logfile
✔	8FHQ	29099	2023-07-04	2022-12-14	2.81	3.05	2.83	3.1	0.008	0.82	0.0	0.05	13.57	0.01	2.303	4.02	0.65	3.5	96.5	0.0	-1.14	0.62	0.86	3.75	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.261	3.14	0.52	2.3	97.7	0.0	0.50	0.90	0.62	0.86	3.57	7306	950	4	0	4	0	0	logfile
✔	7S8L	24896	2023-07-04	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7ADZ	11734	2023-07-09	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.44	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.003	0.60	0.0	0.04	16.34	0.00	2.160	3.15	1.73	2.7	97.3	0.0	0.40	0.66	0.66	0.88	4.16	67794	8508	30	0	0	0	0	logfile
✔	7P8W	13256	2023-07-08	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.16	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	8FUZ	29482	2023-07-11	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	17.81	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.003	0.56	0.0	0.04	17.79	0.00	2.228	3.17	1.53	1.6	98.4	0.0	0.75	0.34	0.77	0.91	5.53	24008	3120	16	0	16	0	0	logfile
✔	7PBP	13298	2023-07-15	2021-08-02	3.2	3.11	—	3.2	0.004	0.73	0.0	0.04	14.69	0.01	1.860	1.52	0.12	1.0	99.0	0.0	-0.71	0.79	0.83	2.81	3.2	0.003	0.57	0.0	0.04	16.76	0.00	1.827	3.17	0.18	2.1	97.9	0.0	1.23	0.81	0.80	0.86	2.23	32077	1968	16	30	9	0	15818	logfile

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