Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S8L	24896	2023-02-18	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7ADZ	11734	2023-02-26	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.44	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.003	0.60	0.0	0.04	16.34	0.00	2.160	3.15	1.73	2.7	97.3	0.0	0.40	0.66	0.66	0.88	4.16	67794	8508	30	0	0	0	0	logfile
✔	7PBP	13298	2023-02-28	2021-08-02	3.2	3.11	—	3.2	0.004	0.73	0.0	0.04	14.69	0.01	1.860	1.52	0.12	1.0	99.0	0.0	-0.71	0.79	0.83	2.81	3.2	0.003	0.57	0.0	0.04	16.76	0.00	1.827	3.17	0.18	2.1	97.9	0.0	1.23	0.81	0.80	0.86	2.23	32077	1968	16	30	9	0	15818	logfile
✔	7QET	13940	2023-02-23	2021-12-03	2.1	2.53	2.11	2.3	0.009	0.63	0.0	0.04	13.40	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.003	0.52	0.0	0.04	14.36	0.00	2.194	3.17	1.93	1.2	98.8	0.0	3.60	0.39	0.82	0.92	3.53	19205	2256	36	0	60	305	0	logfile
✔	7S8o	24899	2023-02-18	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7UHC	26512	2023-02-24	2022-03-26	3.1	3.68	3.18	3.5	0.010	1.31	0.0	0.08	9.95	0.00	2.551	0.55	0.31	2.6	97.3	0.1	0.29	0.79	0.80	4.24	3.5	0.002	0.54	0.0	0.04	12.64	0.00	2.197	3.19	0.16	1.8	98.2	0.0	1.37	0.56	0.75	0.80	3.77	23136	3192	21	0	60	0	0	logfile
✔	7AU2	11923	2023-02-20	2020-11-02	2.43	2.52	—	2.5	0.005	0.67	0.0	0.05	14.84	0.00	2.392	2.29	0.83	2.2	97.8	0.0	-0.04	0.71	0.86	4.87	2.5	0.003	0.57	0.0	0.04	15.75	0.00	2.295	3.19	1.74	2.4	97.6	0.0	0.45	0.74	0.73	0.89	4.13	11236	1372	6	0	12	0	0	logfile
✔	6U68	20662	2023-02-19	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.71	0.0	0.05	4.13	0.00	2.325	3.21	0.00	6.1	93.9	0.0	-0.04	1.78	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	8D68	27220	2023-02-20	2022-06-06	3.36	3.13	3.28	3.2	0.008	1.06	0.0	0.06	15.51	0.01	2.212	3.37	0.00	7.0	93.0	0.0	-1.43	0.70	0.84	3.63	3.2	0.005	0.68	0.0	0.05	15.03	0.00	2.171	3.22	0.14	7.1	92.9	0.0	-0.63	0.30	0.70	0.83	2.87	13055	1560	10	0	5	0	0	logfile
✔	6SAG	10130	2023-02-21	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	6AYG	7020	2023-02-19	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.58	0.0	0.04	10.75	0.00	2.146	3.23	0.00	2.6	97.4	0.0	1.83	0.90	0.83	0.78	—	10456	1756	4	0	0	0	0	logfile
✔	7QKL	14046	2023-02-17	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.62	0.0	0.05	17.01	0.00	2.552	3.25	0.25	2.7	97.3	0.0	-1.29	2.03	0.44	0.91	7.62	3468	456	6	0	0	0	0	logfile
✔	6Y5G	10696	2023-02-20	2020-02-25	3.0	3.07	3.02	3.0	0.005	0.56	0.0	0.10	14.04	0.00	2.189	3.69	0.94	4.6	95.4	0.0	-2.94	0.73	0.84	4.03	3.0	0.004	0.65	0.0	0.05	16.34	0.00	2.221	3.30	2.50	4.3	95.7	0.0	-0.71	1.18	0.74	0.86	3.98	12036	1470	18	0	36	0	0	logfile
✔	6VPS	21316	2023-02-16	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.003	0.51	0.0	0.03	20.10	0.00	2.351	3.30	1.31	6.9	93.1	0.0	-3.83	1.19	0.47	0.87	6.39	2736	279	9	0	0	0	0	logfile
✔	7STN	25434	2023-02-25	2021-11-14	3.19	3.43	—	3.4	0.008	0.75	0.0	0.04	9.95	0.00	2.366	1.05	0.15	2.2	97.8	0.0	2.30	0.66	0.80	3.21	3.4	0.004	0.49	0.0	0.04	12.77	0.00	2.129	3.31	0.00	4.2	95.8	0.0	1.91	1.29	0.64	0.82	2.88	25188	1580	4	0	10	0	12256	logfile
✔	7oR0	13036	2023-02-23	2021-06-04	2.64	3.23	2.80	3.0	0.011	1.06	0.0	0.35	13.24	0.01	2.217	2.61	1.15	5.4	94.2	0.3	-1.99	0.72	0.85	3.40	3.0	0.002	0.54	0.0	0.04	14.74	0.00	2.270	3.31	1.72	3.8	96.2	0.0	1.57	1.12	0.71	0.85	2.78	19869	2384	16	0	33	52	0	logfile
✔	7DZY	30921	2023-02-22	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.91	0.0	0.00	5.70	0.00	2.051	3.31	0.00	15.9	83.9	0.1	-2.90	2.20	0.70	0.69	—	18708	4677	9	0	0	0	0	logfile
✔	7T11	25587	2023-02-18	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	2.0	0.04	10.76	0.00	2.107	3.46	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.005	0.68	2.0	0.04	13.72	0.00	2.232	3.33	0.93	3.5	96.5	0.0	0.85	0.43	0.62	0.80	3.68	8151	1132	6	0	2	0	0	logfile
✔	7SoD	25267	2023-02-17	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.22	0.0	0.07	9.29	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.004	0.55	0.0	0.04	12.65	0.00	2.296	3.33	0.49	3.9	96.1	0.0	1.13	1.29	0.67	0.90	5.26	3830	473	5	0	7	0	0	logfile
✔	7SQ6	25377	2023-02-21	2021-11-04	2.32	2.12	—	2.3	0.006	0.77	0.0	0.06	16.54	0.00	2.408	4.99	0.00	2.8	97.2	0.0	1.57	0.69	0.88	4.86	2.3	0.004	0.58	0.0	0.04	16.64	0.00	2.218	3.33	2.45	2.1	97.9	0.0	2.12	0.91	0.70	0.90	4.69	15342	1868	16	0	14	12	0	logfile

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