Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XJG	33226	2022-12-13	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.72	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.003	0.57	0.0	0.04	21.98	0.00	2.110	7.64	4.90	4.0	96.0	0.0	0.64	0.25	0.79	0.79	2.59	13167	1066	12	216	2	0	0	logfile
✔	7SiM	25144	2022-12-13	2021-10-14	2.7	2.00	—	1.6	0.005	0.69	0.0	0.05	13.44	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.004	0.58	0.0	0.04	15.83	0.00	2.195	9.63	1.11	1.6	98.4	0.0	0.29	0.93	0.75	0.77	3.30	12826	1564	8	0	28	0	0	logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	7oUF	13075	2022-12-13	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.57	0.0	0.04	17.33	0.00	1.686	6.32	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.90	0.01	1.891	10.11	1.92	2.7	97.3	0.0	0.08	1.74	0.79	0.80	2.70	15094	1664	16	80	10	12	0	logfile
✔	7UX1	26845	2022-12-16	2022-05-04	3.48	2.70	3.70	2.1	0.003	0.56	0.0	0.04	12.46	0.00	2.260	6.32	0.00	2.7	97.3	0.0	3.19	0.76	0.72	1.53	1.6	0.004	0.62	0.0	0.04	13.26	0.00	1.933	7.97	0.49	3.5	96.5	0.0	1.88	0.45	0.77	0.77	1.54	28931	4991	7	0	0	0	0	logfile
✔	7USM	26739	2022-12-12	2022-04-25	2.7	2.25	—	1.5	0.003	0.61	0.0	0.04	12.70	0.01	2.109	6.48	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.005	0.75	0.0	0.05	16.31	0.01	2.088	10.40	2.05	4.3	95.7	0.0	-0.67	0.48	0.74	0.72	2.45	11893	1521	5	0	15	0	0	logfile
✔	6Z9F	11122	2022-12-15	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	5.54	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	7ZGU	14713	2022-12-20	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.86	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	1.6	0.004	0.79	0.0	0.04	17.60	0.00	2.076	14.71	0.41	6.7	93.3	0.0	-1.18	1.01	0.71	0.72	1.73	38940	4854	12	0	6	0	0	logfile
✔	7Z0o	14428	2022-12-12	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.24	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.59	0.0	0.04	21.16	0.00	2.152	8.87	3.02	2.1	97.9	0.0	1.78	0.48	0.77	0.79	3.25	11864	1256	10	78	0	0	0	logfile
✔	7L1S	23117	2022-12-15	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.68	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.7	0.005	0.87	0.0	0.05	17.92	0.01	1.655	19.17	1.06	5.1	94.9	0.0	-0.42	1.70	0.66	0.69	0.71	24176	3118	12	0	11	0	0	logfile
✔	7Z1Z	14453	2022-12-19	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.63	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.004	0.78	0.0	0.05	18.31	0.00	2.067	15.01	0.23	3.9	96.1	0.0	-0.07	0.75	0.67	0.67	1.49	35605	4031	36	140	12	0	0	logfile
✔	7VD8	31910	2022-12-20	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.74	0.80	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7L1Q	23115	2022-12-15	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.72	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.003	0.77	0.0	0.05	17.74	0.01	1.877	15.00	0.82	3.5	96.5	0.0	0.03	2.07	0.72	0.73	1.29	24204	3118	13	0	13	0	0	logfile
✔	7MW6	24064	2022-12-19	2021-05-15	3.22	2.55	—	1.7	0.004	0.80	1.0	0.09	14.34	0.01	1.556	11.22	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.7	0.004	0.70	0.0	0.05	15.55	0.01	2.124	11.64	0.27	5.7	93.8	0.6	-0.49	0.44	0.80	0.75	2.87	35247	4446	45	0	87	0	0	logfile
✔	7S3H	24823	2022-12-12	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.91	0.01	2.234	3.82	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.003	0.64	0.0	0.04	18.78	0.00	2.138	12.03	2.29	3.1	96.9	0.0	-0.02	0.75	0.78	0.76	2.09	9966	1030	4	75	1	0	0	logfile
✔	8AG4	15415	2022-12-12	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.7	0.002	0.47	0.0	0.04	15.71	0.00	2.188	6.06	1.03	3.2	96.8	0.0	0.97	0.89	0.81	0.83	3.75	11155	1384	4	0	0	0	0	logfile
✔	7UWL	26835	2022-12-12	2022-05-03	3.7	2.40	3.59	1.9	0.004	0.75	1.0	0.05	16.20	0.00	2.137	15.86	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.004	0.81	0.0	0.05	16.95	0.01	2.075	17.58	0.81	9.0	91.0	0.0	-1.77	0.45	0.69	0.65	1.78	10100	1236	16	0	22	0	0	logfile
✔	7N5F	24188	2022-12-11	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.36	0.78	3.26	3037	386	1	0	1	0	0	logfile
✔	7oUG	13076	2022-12-13	2021-06-11	3.1	2.33	3.12	1.7	0.005	0.73	0.0	0.04	17.64	0.01	1.769	5.73	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.7	0.003	0.69	0.0	0.04	19.41	0.00	1.953	10.06	0.55	2.0	98.0	0.0	-0.03	0.62	0.78	0.79	2.32	15090	1664	16	80	10	8	0	logfile
✔	7TU5	26126	2022-12-20	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile

• ← previous
• Page 2 of 443
• next →