Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RYF	24738	2022-05-17	2021-08-25	2.65	2.01	—	2.3	0.006	0.62	0.0	0.07	15.08	0.02	1.764	4.34	0.02	2.5	97.4	0.1	1.04	0.76	0.73	2.78	1.6	0.006	0.85	0.0	0.05	16.12	0.01	1.778	6.93	2.66	3.2	96.7	0.1	0.11	0.35	0.78	0.76	2.66	137516	5497	55	4408	8	0	0	logfile
✔	7KBB	22788	2022-05-12	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	15.05	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.008	1.17	0.0	0.05	14.56	0.01	2.104	16.16	0.00	6.4	93.6	0.0	-0.45	1.23	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	7M4X	23669	2022-05-17	2021-03-22	2.66	1.75	—	1.6	0.008	0.57	0.0	0.05	15.13	0.01	1.789	3.68	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.71	0.0	0.04	16.13	0.01	1.695	5.30	2.25	3.0	96.9	0.1	0.31	0.34	0.80	0.76	3.36	139446	5528	73	4453	194	552	0	logfile
✔	6Z9F	11122	2022-05-16	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	5.54	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	6W6P	21562	2022-05-16	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.51	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.7	0.006	0.81	1.0	0.04	16.28	0.01	1.965	6.02	8.53	9.4	90.6	0.1	-1.98	1.59	0.79	0.86	2.65	133554	5058	51	4378	4	0	0	logfile
✔	7N5F	24188	2022-05-12	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	7Z0o	14428	2022-05-13	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.24	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.60	0.0	0.04	21.28	0.00	2.126	9.04	2.84	2.4	97.6	0.0	1.69	0.49	0.77	0.78	3.19	11864	1256	10	78	0	0	0	logfile
✔	7L1Q	23115	2022-05-15	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.72	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.007	0.92	0.0	0.05	18.00	0.01	1.739	18.25	1.41	5.3	94.6	0.0	-0.45	2.07	0.73	0.74	1.50	24204	3118	13	0	13	0	0	logfile
✔	7P13	13154	2022-05-13	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.7	0.004	0.52	0.0	0.04	17.33	0.00	2.087	15.59	1.88	2.8	97.2	0.0	4.89	0.51	0.84	0.88	3.66	13727	1743	7	0	0	0	154	logfile
✔	7VD8	31910	2022-05-17	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7S3H	24823	2022-05-13	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.91	0.01	2.234	3.82	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.010	0.83	1.0	0.04	19.08	0.00	2.094	13.21	2.50	3.6	96.4	0.0	-0.29	0.76	0.79	0.77	2.22	9966	1030	4	75	1	0	0	logfile
✔	7L1S	23117	2022-05-15	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.68	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.8	0.005	0.87	0.0	0.05	17.94	0.01	1.709	17.90	0.59	4.5	95.5	0.0	-0.15	1.68	0.66	0.69	0.74	24176	3118	12	0	11	0	0	logfile
✔	7MW6	24064	2022-05-17	2021-05-15	3.22	2.55	—	1.7	0.004	0.80	1.0	0.09	14.34	0.01	1.556	11.22	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.8	0.007	0.79	1.0	0.05	15.64	0.01	2.070	11.61	0.24	5.7	93.7	0.6	-0.52	0.43	0.80	0.76	2.81	35247	4446	45	0	87	0	0	logfile
✔	7TBG	25798	2022-05-15	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	7PF1	13364	2022-05-17	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.61	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	11.41	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✔	7K00	22586	2022-05-21	2020-09-02	1.98	1.72	—	1.9	0.007	0.96	3.0	0.05	15.24	0.02	1.588	7.51	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.006	0.84	0.0	0.04	15.29	0.01	1.757	8.10	3.17	3.9	96.1	0.0	0.01	0.86	0.71	0.86	4.96	149338	5585	117	4555	331	7248	0	logfile
✔	7N1X	24126	2022-05-15	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	10.07	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.008	0.89	1.0	0.05	16.35	0.01	2.088	14.18	0.60	4.9	95.1	0.0	-1.02	1.09	0.80	0.68	—	26810	3257	35	0	95	0	0	logfile
✔	7VD9	31911	2022-05-14	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7oUH	13077	2022-05-13	2021-06-11	3.5	2.47	3.44	2.1	0.013	0.74	0.0	0.04	17.34	0.01	1.666	7.68	0.00	1.6	98.4	0.0	0.40	0.76	0.71	2.22	1.8	0.004	0.80	0.0	0.04	19.82	0.01	1.880	14.67	0.62	3.2	96.8	0.0	-0.45	0.67	0.75	0.75	2.34	15088	1664	18	80	10	6	0	logfile
✔	7RPo	24618	2022-05-13	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.005	0.77	0.0	0.05	18.51	0.01	1.983	13.27	0.00	11.0	89.0	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile

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