Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YL3	10835	2021-04-04	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.81	0.0	0.05	16.26	0.01	1.730	5.48	1.50	4.1	95.7	0.2	-0.18	0.53	0.82	0.86	7.05	150156	9552	84	0	24	3672	73044	logfile
✔	6SAG	10130	2021-04-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6X8M	22094	2021-04-01	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.26	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	2.1	0.004	0.69	0.0	0.05	16.17	0.01	2.135	4.22	0.59	4.1	95.9	0.0	-0.03	1.62	0.76	0.88	5.87	133440	16800	60	0	0	0	0	logfile
✔	7JVR	22511	2021-04-01	2020-08-22	2.8	2.21	—	2.0	0.023	0.96	0.0	0.10	8.76	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.85	0.0	0.04	10.65	0.00	2.127	15.00	0.00	2.3	97.7	0.0	0.37	1.22	0.76	0.77	2.92	8872	1126	6	0	1	0	0	logfile
✔	6VYR	21469	2021-04-14	2020-02-27	3.8	2.08	—	3.0	0.008	1.23	37.0	0.10	16.68	0.01	1.028	8.06	8.21	7.0	91.9	1.1	-2.96	0.58	0.38	0.07	2.1	0.008	1.19	0.0	0.06	18.92	0.01	1.702	30.40	0.03	15.5	84.2	0.2	-4.14	2.18	0.70	0.62	1.19	300728	9496	67	4761	3	0	124723	logfile
✔	7JFo	22308	2021-04-04	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.67	1.23	3.9	96.1	0.0	-0.96	0.72	0.77	6.96	2.1	0.002	0.58	0.0	0.04	14.43	0.00	2.193	6.77	1.00	2.0	98.0	0.0	1.44	0.79	0.70	0.75	5.59	38958	4832	40	0	0	1198	0	logfile
✔	6ZJA	11233	2021-04-02	2020-06-28	2.0	2.10	2.09	2.1	0.005	0.86	0.0	0.06	14.30	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.75	0.0	0.05	16.03	0.01	1.665	1.38	0.54	4.2	95.8	0.0	-0.07	0.39	0.78	0.89	6.84	77951	9684	60	0	36	3191	0	logfile
✔	7LBM	23255	2021-04-05	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.00	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.1	0.007	0.88	0.0	0.05	14.73	0.01	1.865	19.32	0.04	8.4	91.5	0.1	-0.99	1.91	0.61	0.60	—	129277	15887	68	128	19	0	0	logfile
✔	7JJP	22358	2021-04-04	2020-07-27	1.94	2.15	2.08	2.1	0.011	1.21	0.0	0.07	14.56	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.002	0.54	0.0	0.04	14.98	0.00	2.108	7.63	0.61	0.9	99.1	0.0	3.79	0.93	0.72	0.87	4.90	40920	2352	36	0	180	396	19104	logfile
✔	6QB8	4489	2021-04-05	2018-12-20	3.97	4.19	—	2.3	0.005	0.96	0.0	0.06	15.67	0.01	2.238	11.60	0.76	8.2	91.8	0.0	-4.47	0.89	0.77	0.40	2.1	0.004	0.72	0.0	0.04	14.35	0.00	2.075	23.97	0.00	8.3	91.7	0.0	-1.49	1.58	0.89	0.78	0.47	60035	7870	18	0	2	0	0	logfile
✔	6XEY	22156	2021-04-03	2020-06-14	3.25	3.61	2.92	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.59	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.003	0.53	0.0	0.04	12.48	0.00	2.163	5.99	0.00	4.4	95.5	0.1	-0.21	0.34	0.89	0.85	2.59	28482	3788	24	0	63	0	0	logfile
✔	6WX6	21951	2021-04-01	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.54	0.0	0.04	16.22	0.00	2.001	2.31	0.69	1.2	98.8	0.0	4.73	0.53	0.78	0.89	7.36	68332	4128	56	0	8	2420	32664	logfile
✔	6M2W	30067	2021-04-05	2020-03-01	3.8	2.59	3.89	2.6	0.006	1.08	0.0	0.05	15.60	0.01	2.276	3.98	3.59	3.1	96.9	0.0	-5.38	0.77	0.64	0.21	2.1	0.004	0.65	0.0	0.04	13.28	0.00	2.137	8.54	0.00	2.9	97.1	0.0	0.08	1.86	0.83	0.80	2.60	120452	14972	16	0	1828	0	0	logfile
✔	5M5H	4155	2021-04-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	38.97	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.97	0.0	0.05	12.81	0.01	2.312	22.01	0.00	10.3	89.7	0.0	-1.07	2.79	0.15	0.15	—	1086	132	1	0	0	0	0	logfile
✔	6X19	21993	2021-04-01	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.48	6.0	0.08	14.12	0.01	2.134	12.47	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.80	0.0	0.04	16.71	0.00	2.132	6.38	1.10	2.0	98.0	0.0	1.16	1.56	0.72	0.87	4.45	10277	1258	9	0	1	136	0	logfile
✔	7KZN	23083	2021-04-03	2020-12-10	4.0	2.94	—	2.2	0.010	1.36	7.0	0.07	14.78	0.01	2.202	10.72	0.48	10.0	89.8	0.2	-3.22	0.70	0.67	—	2.2	0.004	0.77	0.0	0.05	14.19	0.01	2.104	14.93	0.04	9.2	90.8	0.0	-1.41	1.48	0.68	0.64	—	31205	4099	19	0	289	0	0	logfile
✔	6XS6	22301	2021-04-02	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.005	0.70	0.0	0.05	14.34	0.01	2.150	9.86	0.00	7.7	92.3	0.0	-1.38	0.32	0.58	0.59	2.42	18294	2357	3	0	0	0	0	logfile
✔	6SK0	10219	2021-04-01	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.006	0.74	0.0	0.05	17.20	0.00	2.132	11.20	0.81	4.5	95.5	0.0	-1.33	1.50	0.79	0.89	7.00	5826	792	3	0	0	0	0	logfile
✔	6WZ5	21970	2021-04-02	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.61	0.0	0.04	29.36	0.00	2.165	6.24	0.93	1.8	98.2	0.0	2.72	0.88	0.87	0.89	3.73	12443	774	10	306	0	0	0	logfile
✔	6RBD	4792	2021-04-02	2019-04-10	3.47	3.74	3.51	2.5	0.006	0.97	0.0	0.05	16.65	0.01	2.223	6.30	0.28	5.3	94.6	0.0	-3.01	0.90	0.81	1.85	2.2	0.010	0.89	0.0	0.05	17.59	0.01	1.974	27.17	0.02	7.7	92.3	0.1	-1.40	1.85	0.91	0.83	1.52	81048	5450	35	1777	0	0	0	logfile

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