Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3KTT	5148	2023-08-09	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.6	0.005	1.21	0.0	0.05	17.07	0.01	2.016	34.63	0.49	11.5	87.3	1.2	-2.51	2.08	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	7USM	26739	2023-08-12	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.76	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.003	0.69	0.0	0.04	16.30	0.00	2.109	9.21	1.75	3.8	96.2	0.0	-0.43	0.48	0.73	0.72	2.18	11893	1521	5	0	15	0	0	logfile
✔	8CPM	16783	2023-08-23	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	1.6	0.003	0.60	0.0	0.04	16.38	0.00	2.043	7.22	0.11	2.3	97.7	0.0	4.30	0.37	0.71	0.77	7.46	36090	4152	72	0	38	1972	0	logfile
✔	7SiL	25143	2023-08-12	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.66	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.58	0.0	0.04	16.10	0.00	2.167	8.36	1.77	2.8	97.2	0.0	0.57	0.39	0.77	0.78	2.87	12924	1564	8	0	34	0	0	logfile
✔	7SiM	25144	2023-08-12	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.50	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.55	0.0	0.04	15.84	0.00	2.196	9.00	0.81	1.6	98.4	0.0	0.50	0.93	0.75	0.76	3.23	12826	1564	8	0	28	0	0	logfile
✔	7UTZ	26795	2023-08-17	2022-04-28	2.4	2.07	—	2.4	0.004	0.69	0.0	0.04	12.27	0.01	2.137	3.96	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.004	0.62	0.0	0.04	15.20	0.00	1.878	9.89	2.26	4.4	95.6	0.0	-0.39	0.77	0.72	0.77	3.66	23679	1536	10	0	8	0	11632	logfile
✔	8CPU	16786	2023-08-23	2023-03-03	1.76	1.54	1.80	1.6	0.004	0.71	0.0	0.05	14.91	0.01	1.976	4.95	0.00	1.0	99.0	0.0	2.29	0.71	0.77	8.55	1.6	0.004	0.62	0.0	0.04	15.65	0.00	2.051	5.31	0.57	1.8	98.2	0.0	3.90	0.29	0.73	0.80	8.29	35823	4152	72	0	38	1705	0	logfile
✔	6Z9F	11122	2023-08-20	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.003	0.63	0.0	0.04	14.99	0.00	2.122	4.64	3.05	1.8	98.2	0.0	4.60	0.98	0.85	0.86	8.43	41020	4152	72	0	32	4172	0	logfile
✔	7ZGU	14713	2023-08-24	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.55	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	1.6	0.005	0.84	0.0	0.05	17.66	0.01	2.037	16.05	1.02	7.5	92.5	0.0	-1.49	1.02	0.71	0.73	1.75	38940	4854	12	0	6	0	0	logfile
✔	6W6P	21562	2023-08-19	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.48	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.6	0.004	0.72	0.0	0.04	16.11	0.01	1.971	5.86	8.23	8.7	91.2	0.1	-1.86	1.60	0.79	0.86	2.56	133554	5058	51	4378	4	0	0	logfile
✔	7UAF	26423	2023-08-15	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.82	13.0	0.10	13.98	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.004	0.64	0.0	0.04	17.33	0.00	1.873	6.71	2.11	3.7	96.3	0.0	-0.06	1.19	0.83	0.83	4.25	17864	2131	22	0	58	0	0	logfile
✔	8CAM	16530	2023-08-21	2023-01-24	1.86	1.57	1.83	1.7	0.010	1.53	0.0	0.11	14.23	0.03	1.821	0.54	0.27	3.0	96.8	0.1	-1.28	0.64	0.76	6.57	1.6	0.005	0.88	0.0	0.05	14.56	0.01	1.757	7.16	1.42	2.3	97.6	0.0	0.01	0.34	0.73	0.82	6.32	86648	2767	65	2724	322	6113	0	logfile
✔	8oM9	16971	2023-08-13	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.80	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.6	0.004	0.72	0.0	0.04	19.00	0.00	1.822	19.87	0.65	5.7	94.3	0.1	-0.75	0.53	0.67	0.66	0.65	13314	1548	6	44	4	0	0	logfile
✔	7XJG	33226	2023-08-13	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.57	0.0	0.04	21.98	0.00	2.113	7.40	4.28	3.9	96.1	0.0	0.70	0.25	0.79	0.79	2.46	13167	1066	12	216	2	0	0	logfile
✔	8BPA	16147	2023-08-11	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.80	0.0	0.04	18.78	0.01	2.140	16.42	0.53	4.4	95.6	0.0	0.14	1.61	0.69	0.66	1.15	10393	1280	6	0	7	0	0	logfile
✔	7V7C	31766	2023-08-25	2021-08-21	3.7	2.55	—	2.0	0.005	0.86	0.0	0.05	9.60	0.01	2.268	5.66	0.09	9.0	91.0	0.0	-4.75	0.68	0.69	1.95	1.6	0.003	0.77	0.0	0.05	14.91	0.00	2.124	14.29	0.42	7.7	92.3	0.0	-2.11	1.33	0.68	0.68	1.30	40264	5084	8	0	0	0	0	logfile
✔	7UX1	26845	2023-08-20	2022-05-04	3.48	2.70	3.65	2.1	0.003	0.56	0.0	0.04	12.46	0.00	2.260	6.32	0.00	2.7	97.3	0.0	3.19	0.76	0.72	1.53	1.6	0.003	0.60	0.0	0.04	13.17	0.00	1.924	7.64	0.57	3.7	96.3	0.0	2.02	0.45	0.77	0.76	1.70	28931	4991	7	0	0	0	0	logfile
✔	7M4X	23669	2023-08-23	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✔	7oUF	13075	2023-08-13	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.56	0.0	0.04	17.36	0.00	1.686	6.25	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.84	0.01	1.946	10.18	1.99	2.3	97.7	0.0	0.00	1.74	0.79	0.80	2.77	15094	1664	16	80	10	12	0	logfile
✔	7KBB	22788	2023-08-10	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.003	0.72	0.0	0.04	14.59	0.01	2.110	14.66	0.00	6.7	93.3	0.0	-0.71	0.66	0.58	0.60	—	6422	812	7	0	0	0	0	logfile

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