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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3KTT | 5148 | 2023-08-09 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.6 | 0.005 | 1.21 | 0.0 | 0.05 | 17.07 | 0.01 | 2.016 | 34.63 | 0.49 | 11.5 | 87.3 | 1.2 | -2.51 | 2.08 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7USM | 26739 | 2023-08-12 | 2022-04-25 | 2.7 | 2.25 | — | 1.5 | 0.003 | 0.63 | 0.0 | 0.04 | 12.76 | 0.01 | 2.109 | 6.35 | 0.00 | 3.9 | 96.1 | 0.0 | -0.89 | 0.72 | 0.68 | 2.45 | 1.6 | 0.003 | 0.69 | 0.0 | 0.04 | 16.30 | 0.00 | 2.109 | 9.21 | 1.75 | 3.8 | 96.2 | 0.0 | -0.43 | 0.48 | 0.73 | 0.72 | 2.18 | 11893 | 1521 | 5 | 0 | 15 | 0 | 0 | logfile |
✔ | 8CPM | 16783 | 2023-08-23 | 2023-03-03 | 1.81 | 1.57 | 1.84 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 15.21 | 0.01 | 1.916 | 7.77 | 0.00 | 1.0 | 99.0 | 0.0 | 2.32 | 0.70 | 0.75 | 7.56 | 1.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.38 | 0.00 | 2.043 | 7.22 | 0.11 | 2.3 | 97.7 | 0.0 | 4.30 | 0.37 | 0.71 | 0.77 | 7.46 | 36090 | 4152 | 72 | 0 | 38 | 1972 | 0 | logfile |
✔ | 7SiL | 25143 | 2023-08-12 | 2021-10-14 | 2.7 | 1.97 | — | 1.5 | 0.004 | 0.70 | 0.0 | 0.05 | 13.66 | 0.00 | 2.160 | 6.65 | 0.15 | 2.1 | 97.9 | 0.0 | 0.60 | 0.75 | 0.72 | 3.10 | 1.6 | 0.003 | 0.58 | 0.0 | 0.04 | 16.10 | 0.00 | 2.167 | 8.36 | 1.77 | 2.8 | 97.2 | 0.0 | 0.57 | 0.39 | 0.77 | 0.78 | 2.87 | 12924 | 1564 | 8 | 0 | 34 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2023-08-12 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.50 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.84 | 0.00 | 2.196 | 9.00 | 0.81 | 1.6 | 98.4 | 0.0 | 0.50 | 0.93 | 0.75 | 0.76 | 3.23 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7UTZ | 26795 | 2023-08-17 | 2022-04-28 | 2.4 | 2.07 | — | 2.4 | 0.004 | 0.69 | 0.0 | 0.04 | 12.27 | 0.01 | 2.137 | 3.96 | 0.08 | 3.0 | 97.0 | 0.0 | -0.05 | 0.66 | 0.68 | 3.51 | 1.6 | 0.004 | 0.62 | 0.0 | 0.04 | 15.20 | 0.00 | 1.878 | 9.89 | 2.26 | 4.4 | 95.6 | 0.0 | -0.39 | 0.77 | 0.72 | 0.77 | 3.66 | 23679 | 1536 | 10 | 0 | 8 | 0 | 11632 | logfile |
✔ | 8CPU | 16786 | 2023-08-23 | 2023-03-03 | 1.76 | 1.54 | 1.80 | 1.6 | 0.004 | 0.71 | 0.0 | 0.05 | 14.91 | 0.01 | 1.976 | 4.95 | 0.00 | 1.0 | 99.0 | 0.0 | 2.29 | 0.71 | 0.77 | 8.55 | 1.6 | 0.004 | 0.62 | 0.0 | 0.04 | 15.65 | 0.00 | 2.051 | 5.31 | 0.57 | 1.8 | 98.2 | 0.0 | 3.90 | 0.29 | 0.73 | 0.80 | 8.29 | 35823 | 4152 | 72 | 0 | 38 | 1705 | 0 | logfile |
✔ | 6Z9F | 11122 | 2023-08-20 | 2020-06-03 | 1.56 | 1.61 | 1.61 | 1.6 | 0.015 | 1.74 | 48.0 | 0.10 | 15.51 | 0.01 | 1.782 | 5.46 | 3.66 | 1.7 | 98.3 | 0.0 | 2.70 | 0.68 | 0.69 | 8.63 | 1.6 | 0.003 | 0.63 | 0.0 | 0.04 | 14.99 | 0.00 | 2.122 | 4.64 | 3.05 | 1.8 | 98.2 | 0.0 | 4.60 | 0.98 | 0.85 | 0.86 | 8.43 | 41020 | 4152 | 72 | 0 | 32 | 4172 | 0 | logfile |
✔ | 7ZGU | 14713 | 2023-08-24 | 2022-04-04 | 3.4 | 2.24 | 3.39 | 2.1 | 0.003 | 0.68 | 0.0 | 0.04 | 14.94 | 0.00 | 2.201 | 11.55 | 0.55 | 6.2 | 93.8 | 0.0 | -0.91 | 0.69 | 0.68 | 1.58 | 1.6 | 0.005 | 0.84 | 0.0 | 0.05 | 17.66 | 0.01 | 2.037 | 16.05 | 1.02 | 7.5 | 92.5 | 0.0 | -1.49 | 1.02 | 0.71 | 0.73 | 1.75 | 38940 | 4854 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6W6P | 21562 | 2023-08-19 | 2020-03-17 | 2.9 | 2.21 | — | 1.7 | 0.010 | 1.07 | 0.0 | 0.06 | 16.55 | 0.01 | 1.989 | 6.48 | 16.52 | 12.1 | 87.6 | 0.3 | -4.00 | 0.77 | 0.84 | 2.96 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 16.11 | 0.01 | 1.971 | 5.86 | 8.23 | 8.7 | 91.2 | 0.1 | -1.86 | 1.60 | 0.79 | 0.86 | 2.56 | 133554 | 5058 | 51 | 4378 | 4 | 0 | 0 | logfile |
✔ | 7UAF | 26423 | 2023-08-15 | 2022-03-12 | 2.4 | 2.07 | 3.04 | 1.6 | 0.012 | 1.82 | 13.0 | 0.10 | 13.98 | 0.02 | 1.783 | 1.19 | 0.16 | 3.1 | 96.9 | 0.0 | -0.18 | 0.80 | 0.80 | 5.45 | 1.6 | 0.004 | 0.64 | 0.0 | 0.04 | 17.33 | 0.00 | 1.873 | 6.71 | 2.11 | 3.7 | 96.3 | 0.0 | -0.06 | 1.19 | 0.83 | 0.83 | 4.25 | 17864 | 2131 | 22 | 0 | 58 | 0 | 0 | logfile |
✔ | 8CAM | 16530 | 2023-08-21 | 2023-01-24 | 1.86 | 1.57 | 1.83 | 1.7 | 0.010 | 1.53 | 0.0 | 0.11 | 14.23 | 0.03 | 1.821 | 0.54 | 0.27 | 3.0 | 96.8 | 0.1 | -1.28 | 0.64 | 0.76 | 6.57 | 1.6 | 0.005 | 0.88 | 0.0 | 0.05 | 14.56 | 0.01 | 1.757 | 7.16 | 1.42 | 2.3 | 97.6 | 0.0 | 0.01 | 0.34 | 0.73 | 0.82 | 6.32 | 86648 | 2767 | 65 | 2724 | 322 | 6113 | 0 | logfile |
✔ | 8oM9 | 16971 | 2023-08-13 | 2023-03-31 | 3.32 | 2.45 | 3.31 | 2.0 | 0.008 | 1.29 | 3.0 | 0.09 | 18.80 | 0.00 | 2.025 | 25.29 | 2.76 | 6.3 | 93.7 | 0.0 | -1.44 | 0.71 | 0.73 | 0.58 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 19.00 | 0.00 | 1.822 | 19.87 | 0.65 | 5.7 | 94.3 | 0.1 | -0.75 | 0.53 | 0.67 | 0.66 | 0.65 | 13314 | 1548 | 6 | 44 | 4 | 0 | 0 | logfile |
✔ | 7XJG | 33226 | 2023-08-13 | 2022-04-17 | 2.51 | 2.02 | 2.63 | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 22.26 | 0.01 | 1.962 | 7.64 | 3.44 | 4.1 | 95.9 | 0.0 | -0.23 | 0.76 | 0.76 | 2.80 | 1.6 | 0.004 | 0.57 | 0.0 | 0.04 | 21.98 | 0.00 | 2.113 | 7.40 | 4.28 | 3.9 | 96.1 | 0.0 | 0.70 | 0.25 | 0.79 | 0.79 | 2.46 | 13167 | 1066 | 12 | 216 | 2 | 0 | 0 | logfile |
✔ | 8BPA | 16147 | 2023-08-11 | 2022-11-16 | 3.7 | 2.50 | 3.80 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 18.50 | 0.01 | 2.127 | 18.60 | 0.97 | 4.0 | 96.0 | 0.0 | 0.00 | 0.69 | 0.65 | 0.97 | 1.6 | 0.003 | 0.80 | 0.0 | 0.04 | 18.78 | 0.01 | 2.140 | 16.42 | 0.53 | 4.4 | 95.6 | 0.0 | 0.14 | 1.61 | 0.69 | 0.66 | 1.15 | 10393 | 1280 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 7V7C | 31766 | 2023-08-25 | 2021-08-21 | 3.7 | 2.55 | — | 2.0 | 0.005 | 0.86 | 0.0 | 0.05 | 9.60 | 0.01 | 2.268 | 5.66 | 0.09 | 9.0 | 91.0 | 0.0 | -4.75 | 0.68 | 0.69 | 1.95 | 1.6 | 0.003 | 0.77 | 0.0 | 0.05 | 14.91 | 0.00 | 2.124 | 14.29 | 0.42 | 7.7 | 92.3 | 0.0 | -2.11 | 1.33 | 0.68 | 0.68 | 1.30 | 40264 | 5084 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UX1 | 26845 | 2023-08-20 | 2022-05-04 | 3.48 | 2.70 | 3.65 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.46 | 0.00 | 2.260 | 6.32 | 0.00 | 2.7 | 97.3 | 0.0 | 3.19 | 0.76 | 0.72 | 1.53 | 1.6 | 0.003 | 0.60 | 0.0 | 0.04 | 13.17 | 0.00 | 1.924 | 7.64 | 0.57 | 3.7 | 96.3 | 0.0 | 2.02 | 0.45 | 0.77 | 0.76 | 1.70 | 28931 | 4991 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M4X | 23669 | 2023-08-23 | 2021-03-22 | 2.66 | 1.75 | — | 1.6 | 0.006 | 0.56 | 0.0 | 0.03 | 15.11 | 0.01 | 1.789 | 3.62 | 0.00 | 2.5 | 97.4 | 0.1 | 1.32 | 0.77 | 0.73 | 3.46 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 16.10 | 0.01 | 1.684 | 5.41 | 2.69 | 3.2 | 96.7 | 0.1 | 0.26 | 0.35 | 0.79 | 0.76 | 3.35 | 139446 | 5528 | 73 | 4453 | 194 | 552 | 0 | logfile |
✔ | 7oUF | 13075 | 2023-08-13 | 2021-06-11 | 3.0 | 2.26 | 3.10 | 1.7 | 0.005 | 0.56 | 0.0 | 0.04 | 17.36 | 0.00 | 1.686 | 6.25 | 0.14 | 1.8 | 98.2 | 0.0 | 0.10 | 0.78 | 0.75 | 3.06 | 1.6 | 0.003 | 0.68 | 0.0 | 0.04 | 19.84 | 0.01 | 1.946 | 10.18 | 1.99 | 2.3 | 97.7 | 0.0 | 0.00 | 1.74 | 0.79 | 0.80 | 2.77 | 15094 | 1664 | 16 | 80 | 10 | 12 | 0 | logfile |
✔ | 7KBB | 22788 | 2023-08-10 | 2020-10-01 | 4.02 | 2.37 | 4.07 | 2.0 | 0.006 | 1.16 | 0.0 | 0.06 | 14.88 | 0.01 | 2.073 | 14.81 | 1.58 | 5.4 | 94.1 | 0.5 | -1.59 | 0.57 | 0.58 | — | 1.6 | 0.003 | 0.72 | 0.0 | 0.04 | 14.59 | 0.01 | 2.110 | 14.66 | 0.00 | 6.7 | 93.3 | 0.0 | -0.71 | 0.66 | 0.58 | 0.60 | — | 6422 | 812 | 7 | 0 | 0 | 0 | 0 | logfile |