Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z1Z	14453	2022-07-07	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.63	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.006	0.82	0.0	0.05	18.28	0.01	2.072	15.77	0.34	3.9	96.1	0.0	-0.07	0.74	0.68	0.68	1.51	35605	4031	36	140	12	0	0	logfile
✔	7P13	13154	2022-07-04	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.7	0.004	0.52	0.0	0.04	17.33	0.00	2.087	15.59	1.88	2.8	97.2	0.0	4.89	0.51	0.84	0.88	3.66	13727	1743	7	0	0	0	154	logfile
✔	6W6P	21562	2022-07-06	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.51	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.7	0.006	0.83	1.0	0.05	16.24	0.01	1.958	5.88	8.11	9.5	90.4	0.1	-1.91	1.60	0.79	0.86	2.57	133554	5058	51	4378	4	0	0	logfile
✔	7VD8	31910	2022-07-07	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7L1Q	23115	2022-07-05	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.72	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.007	0.92	0.0	0.05	18.00	0.01	1.739	18.25	1.41	5.3	94.6	0.0	-0.45	2.07	0.73	0.74	1.50	24204	3118	13	0	13	0	0	logfile
✔	7TU5	26126	2022-07-07	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile
✔	7SQG	25384	2022-07-03	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.58	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.006	0.67	0.0	0.05	18.89	0.01	2.071	8.38	1.88	4.2	95.8	0.0	1.28	0.97	0.81	0.82	3.52	6630	810	6	0	12	0	0	logfile
✔	7VD9	31911	2022-07-04	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7RPo	24618	2022-07-03	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.005	0.77	0.0	0.05	18.51	0.01	1.983	13.27	0.00	11.0	89.0	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7L1S	23117	2022-07-05	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.68	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.8	0.005	0.87	0.0	0.05	17.94	0.01	1.709	17.90	0.59	4.5	95.5	0.0	-0.15	1.68	0.66	0.69	0.74	24176	3118	12	0	11	0	0	logfile
✔	7SX3	25492	2022-07-07	2021-11-22	3.1	2.52	3.30	1.7	0.004	0.66	0.0	0.08	14.47	0.01	2.199	3.25	0.00	2.8	97.2	0.0	0.09	0.73	0.81	2.40	1.8	0.005	0.70	0.0	0.05	16.20	0.00	2.144	6.25	0.34	2.6	97.4	0.0	1.71	0.44	0.74	0.84	1.89	37959	4608	6	0	85	0	0	logfile
✔	7MW6	24064	2022-07-07	2021-05-15	3.22	2.55	—	1.7	0.004	0.80	1.0	0.09	14.34	0.01	1.556	11.22	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.8	0.007	0.79	1.0	0.05	15.64	0.01	2.070	11.61	0.24	5.7	93.7	0.6	-0.52	0.43	0.80	0.76	2.81	35247	4446	45	0	87	0	0	logfile
✔	7M3G	23654	2022-07-03	2021-03-18	2.5	2.29	—	1.8	0.007	0.95	14.0	0.06	16.94	0.01	2.281	2.29	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.56	14.0	0.04	17.35	0.01	2.182	4.31	2.29	3.2	96.8	0.0	0.03	1.15	0.85	0.87	3.24	13298	1627	11	0	41	0	0	logfile
✔	7PF1	13364	2022-07-07	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.61	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	11.41	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✔	8CZo	27100	2022-07-06	2022-05-25	4.3	2.75	4.13	2.2	0.004	0.75	0.0	0.04	16.53	0.00	2.084	18.96	0.00	10.9	89.1	0.0	-2.32	0.50	0.66	—	1.8	0.004	0.89	0.0	0.05	14.10	0.01	2.033	16.83	0.05	9.1	90.9	0.0	-0.71	1.45	0.50	0.65	—	34518	4268	44	0	0	0	0	logfile
✔	7N1X	24126	2022-07-05	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	10.07	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.008	0.89	1.0	0.05	16.35	0.01	2.088	14.18	0.60	4.9	95.1	0.0	-1.02	1.09	0.80	0.68	—	26810	3257	35	0	95	0	0	logfile
✔	7UFM	26477	2022-07-07	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	1.8	0.006	1.10	0.0	0.05	19.48	0.01	2.099	21.44	1.07	8.3	91.7	0.0	-1.94	1.02	0.68	0.66	0.48	36392	4354	30	72	14	0	0	logfile
✔	7TBG	25798	2022-07-05	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	7E9H	31032	2022-07-04	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.13	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.007	0.92	0.0	0.04	15.19	0.01	2.081	15.55	0.24	5.1	94.9	0.0	-1.08	2.01	0.71	0.67	—	16847	2309	8	0	0	0	0	logfile
✔	7N1Y	24127	2022-07-05	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.91	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	1.9	0.006	0.92	0.0	0.05	14.68	0.01	2.042	15.20	0.04	6.6	93.4	0.0	-1.50	0.70	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile

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