Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SAG	10130	2021-12-01	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.61	0.0	0.04	15.39	0.01	2.062	3.07	1.30	3.0	97.0	0.0	1.51	0.73	0.60	0.89	6.85	54080	6120	240	120	240	2840	0	logfile
✔	5M5H	4155	2021-12-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.13	—	1086	132	1	0	0	0	0	logfile
✔	7KUE	23036	2021-12-01	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.62	3.0	0.11	15.98	0.01	2.205	5.62	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	2.1	0.009	1.55	0.0	0.05	18.51	0.01	2.248	14.64	0.78	7.3	92.7	0.0	-2.26	0.60	0.72	0.71	1.53	4726	577	4	0	2	0	0	logfile
✔	6WWM	21940	2021-12-01	2020-05-09	2.8	2.26	2.84	2.1	0.012	1.04	0.0	0.06	14.80	0.02	1.967	5.47	0.77	6.9	93.1	0.0	-3.87	0.60	0.80	4.41	2.1	0.003	0.67	0.0	0.04	17.16	0.00	1.954	7.73	1.92	4.1	95.9	0.0	-0.45	1.09	0.61	0.85	3.41	9664	1212	6	1	4	0	0	logfile
✔	7EZH	31387	2021-12-01	2021-06-01	3.2	2.28	—	2.1	0.004	0.66	1.0	0.15	12.76	0.01	2.278	2.46	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.77	0.0	0.07	15.76	0.00	2.182	12.46	0.42	2.4	97.6	0.0	0.84	1.61	0.75	0.76	2.16	8838	1150	6	0	0	0	0	logfile
✔	7PBW	13307	2021-12-01	2021-08-02	2.1	1.98	—	2.1	0.013	4.31	0.0	0.05	21.01	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	2.40	0.0	0.04	17.14	0.01	2.127	8.41	0.15	0.0	100.0	0.0	4.26	0.30	0.77	0.89	7.33	9500	873	54	0	81	230	0	logfile
✔	7JVR	22511	2021-12-01	2020-08-22	2.8	2.21	—	2.0	0.016	0.95	0.0	0.07	8.77	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.77	0.0	0.04	14.52	0.00	2.222	15.28	2.06	2.5	97.5	0.0	0.43	0.67	0.76	0.77	2.53	8872	1126	6	0	1	0	0	logfile
✔	7EZK	31388	2021-12-01	2021-06-01	3.1	2.25	—	2.1	0.010	1.02	0.0	0.06	13.64	0.01	2.206	3.99	0.26	3.4	96.6	0.0	-1.02	0.72	0.73	3.21	2.1	0.004	0.66	0.0	0.04	15.92	0.00	2.150	9.87	0.65	1.9	98.1	0.0	0.80	1.61	0.75	0.78	2.92	7196	922	5	0	0	0	0	logfile
✔	6WWT	21947	2021-12-01	2020-05-09	3.2	2.29	3.15	2.1	0.009	1.28	1.0	0.06	15.21	0.01	2.106	5.94	1.72	6.8	92.9	0.3	-4.07	0.54	0.73	3.01	2.1	0.003	0.67	0.0	0.04	17.58	0.00	1.964	8.68	0.38	4.2	95.8	0.0	-0.44	1.30	0.56	0.78	2.39	9657	1215	5	1	3	0	0	logfile
✔	7LVR	23541	2021-12-01	2021-02-26	2.9	2.16	2.87	2.1	0.013	1.04	0.0	0.06	14.41	0.01	1.937	3.73	0.19	5.2	94.8	0.0	-3.15	0.57	0.78	4.33	2.1	0.004	0.67	0.0	0.04	17.14	0.01	1.915	7.31	2.18	2.8	97.2	0.0	-0.43	1.31	0.59	0.84	3.63	9802	1231	6	1	6	0	0	logfile
✔	6WWN	21941	2021-12-01	2020-05-09	3.5	2.22	3.47	2.2	0.008	0.95	0.0	0.05	14.93	0.01	1.991	6.13	0.66	6.7	93.1	0.2	-3.70	0.54	0.74	3.19	2.2	0.004	0.66	0.0	0.04	16.93	0.00	1.930	7.48	0.47	3.8	96.2	0.0	-0.64	1.04	0.56	0.79	3.14	9784	1230	6	1	6	0	0	logfile
✔	7MKM	23899	2021-12-01	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.76	0.01	2.304	8.49	0.00	2.2	97.8	0.0	-0.82	0.52	0.59	1.64	2.2	0.004	0.82	0.0	0.05	15.73	0.01	2.190	12.82	0.29	7.5	92.5	0.0	-1.99	0.63	0.53	0.61	1.36	3192	406	3	0	1	0	0	logfile
✔	6SK0	10219	2021-12-01	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile
✔	7P6C	13225	2021-12-01	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.72	0.0	0.05	17.16	0.00	2.203	5.95	0.86	3.5	96.5	0.0	-2.59	0.96	0.44	0.89	7.28	8120	1080	10	0	0	0	0	logfile
✔	6WWP	21943	2021-12-01	2020-05-09	3.1	2.34	3.10	2.2	0.007	0.96	0.0	0.07	15.33	0.01	1.992	6.69	0.67	6.5	93.3	0.2	-4.23	0.58	0.80	3.85	2.2	0.004	0.65	0.0	0.04	17.29	0.00	1.905	7.27	0.58	4.3	95.6	0.1	-0.40	1.10	0.60	0.85	2.99	9645	1213	5	1	3	0	0	logfile
✔	6LXV	30007	2021-12-01	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.58	0.0	0.04	16.42	0.00	2.155	4.23	0.68	2.5	97.5	0.0	1.11	0.93	0.79	0.91	6.02	54924	6448	24	0	16	2967	0	logfile
✔	7MTQ	23994	2021-12-02	2021-05-13	3.65	2.61	—	2.2	0.011	0.84	1.0	0.05	13.67	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.004	0.63	0.0	0.04	14.34	0.01	2.159	7.68	0.22	2.9	97.1	0.0	0.05	0.42	0.72	0.75	1.82	10388	1486	4	0	4	0	0	logfile
✔	7EXD	31371	2021-12-01	2021-05-27	3.4	2.47	—	2.2	0.002	0.58	0.0	0.15	12.81	0.00	2.114	6.44	0.53	2.1	97.9	0.0	1.95	0.73	0.73	1.79	2.2	0.003	0.66	0.0	0.04	16.20	0.00	2.081	12.41	0.42	2.8	97.2	0.0	0.81	1.21	0.76	0.77	1.99	8749	1118	5	0	1	0	0	logfile
✔	7DRT	30827	2021-12-01	2020-12-29	2.2	2.32	—	2.3	0.011	1.53	9.0	0.09	13.34	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.74	0.0	0.04	17.33	0.01	2.233	9.77	4.90	5.1	94.8	0.1	-0.18	1.11	0.64	0.76	2.48	6849	830	7	0	7	10	0	logfile
✔	7M22	23629	2021-12-01	2021-03-15	3.65	2.59	3.89	2.3	0.004	0.82	0.0	0.05	14.14	0.01	2.168	7.55	0.61	4.1	95.9	0.0	-0.78	0.72	0.73	2.84	2.3	0.009	1.24	0.0	0.05	16.80	0.01	2.087	13.43	0.76	5.3	94.7	0.0	-1.00	1.24	0.73	0.74	2.60	6042	748	6	0	3	0	0	logfile

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