Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S61	10101	2021-09-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.30	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.63	0.0	0.04	14.73	0.00	1.766	5.08	0.65	1.2	98.8	0.0	4.22	0.74	0.78	0.88	8.81	71060	4128	72	0	30	3854	32904	logfile
✔	7N1W	24125	2021-09-04	2021-05-28	3.33	2.63	—	2.0	0.013	1.77	17.0	0.12	13.88	0.01	1.951	6.08	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	1.9	0.006	0.80	0.0	0.05	16.12	0.00	2.058	14.16	0.95	6.2	93.8	0.0	-0.50	1.59	0.84	0.82	2.31	26810	3257	35	0	95	0	0	logfile
✔	7E9G	31031	2021-09-04	2021-03-04	3.5	2.34	—	1.9	0.006	0.52	0.0	0.06	11.69	0.01	2.229	8.11	0.00	4.0	96.0	0.0	-3.14	0.70	0.66	1.29	1.9	0.007	0.86	0.0	0.04	14.85	0.01	1.913	17.84	0.11	5.6	94.4	0.0	-1.59	0.66	0.72	0.71	1.82	18816	2557	10	0	3	0	0	logfile
✔	6ZGL	11210	2021-09-03	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	8.33	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.55	0.0	0.04	15.71	0.00	2.114	4.82	1.06	0.7	99.3	0.0	3.63	0.75	0.75	0.82	7.01	15760	1848	24	0	0	964	0	logfile
✔	7MKM	23899	2021-09-02	2021-04-24	3.16	2.47	—	2.2	0.003	0.80	0.0	0.05	13.76	0.01	2.304	8.33	0.00	2.2	97.8	0.0	-0.82	0.52	0.59	1.64	1.9	0.004	0.77	0.0	0.05	15.50	0.01	2.306	11.54	0.86	6.0	94.0	0.0	-2.01	0.74	0.53	0.62	1.26	3192	406	3	0	1	0	0	logfile
✔	7E9H	31032	2021-09-03	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	7.98	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.013	1.26	1.0	0.04	14.96	0.01	1.865	19.99	0.30	5.0	94.9	0.1	-1.15	2.04	0.71	0.66	—	16847	2309	8	0	0	0	0	logfile
✔	6TAX	10429	2021-09-05	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.47	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.003	0.67	0.0	0.04	13.77	0.00	2.020	9.13	0.13	7.5	92.5	0.0	0.05	1.92	0.88	0.81	1.88	35235	4349	1	0	71	0	0	logfile
✔	7N1U	24123	2021-09-04	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.48	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.77	0.0	0.05	15.86	0.01	2.124	11.51	0.28	4.0	96.0	0.0	-0.03	0.72	0.84	0.82	2.24	26619	3225	39	0	99	0	0	logfile
✔	6Xi8	22191	2021-09-02	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.38	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.009	1.35	0.0	0.05	17.52	0.01	2.145	20.27	0.97	8.5	91.5	0.0	-2.30	1.29	0.69	0.64	0.08	5022	636	4	0	2	0	0	logfile
✔	7M3N	23658	2021-09-02	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.64	0.0	0.04	15.95	0.00	2.168	5.62	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.64	0.0	0.05	17.03	0.01	2.269	6.98	2.75	4.4	95.5	0.1	-0.58	0.48	0.44	0.83	4.83	6004	759	3	0	0	0	0	logfile
✔	7LBM	23255	2021-09-05	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.00	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.0	0.003	0.84	0.0	0.05	14.68	0.01	1.899	19.74	0.03	8.4	91.5	0.1	-0.87	1.58	0.61	0.61	—	129277	15887	68	128	19	0	0	logfile
✔	5FTJ	3295	2021-09-05	2016-01-14	2.3	2.04	—	2.0	0.010	1.36	0.0	0.18	14.83	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.005	0.85	0.0	0.05	17.99	0.01	2.121	14.14	2.36	6.5	93.3	0.1	-0.59	1.25	0.47	0.68	1.50	34602	4338	18	0	18	120	0	logfile
✔	6WWS	21946	2021-09-02	2020-05-09	2.7	2.11	2.68	2.0	0.014	1.24	8.0	0.09	16.06	0.02	2.077	8.07	3.06	6.5	93.1	0.3	-3.99	0.59	0.78	4.41	2.0	0.005	0.68	0.0	0.05	17.63	0.00	1.991	5.93	1.82	4.1	95.9	0.0	-0.57	1.04	0.59	0.83	4.10	9696	1216	6	1	4	0	0	logfile
✔	6YL3	10835	2021-09-11	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.003	0.71	0.0	0.05	16.22	0.00	1.819	5.07	1.52	3.6	96.2	0.1	0.08	0.82	0.81	0.86	6.95	150156	9552	84	0	24	3672	73044	logfile
✔	7LT3	23510	2021-09-06	2021-02-18	4.6	3.52	—	4.3	0.012	1.33	34.0	0.08	16.13	0.01	2.017	24.92	1.63	10.7	89.2	0.1	-2.30	0.59	0.56	—	2.0	0.003	0.79	0.0	0.04	15.12	0.01	2.064	18.80	0.01	5.2	94.7	0.0	-0.42	1.86	0.60	0.66	—	93244	11261	22	122	42	0	0	logfile
✔	7B18	11981	2021-09-05	2020-11-24	2.62	2.27	2.75	2.1	0.007	0.84	0.0	0.06	12.74	0.01	2.028	12.91	0.40	4.1	95.8	0.1	-0.36	0.72	0.71	3.05	2.0	0.011	0.91	1.0	0.05	15.95	0.01	1.842	14.06	2.10	4.8	95.2	0.0	-0.27	0.49	0.73	0.73	2.51	30105	3814	13	0	44	0	0	logfile
✔	6WWU	21948	2021-09-02	2020-05-09	2.7	2.08	2.76	1.9	0.015	1.25	1.0	0.08	16.20	0.02	2.072	6.82	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	2.0	0.005	0.73	0.0	0.05	17.60	0.00	2.008	7.61	2.97	4.3	95.6	0.1	-0.68	0.68	0.59	0.81	4.10	9688	1216	6	1	4	0	0	logfile
✔	7MiJ	23853	2021-09-04	2021-04-17	1.98	1.95	—	2.0	0.005	1.58	4.0	0.05	21.88	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.58	0.0	0.04	18.65	0.00	2.126	5.87	0.92	3.0	97.0	0.0	1.16	1.11	0.77	0.83	4.74	23010	2556	12	0	38	328	0	logfile
✔	7N1Y	24127	2021-09-04	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.61	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	2.0	0.010	0.89	1.0	0.05	14.51	0.01	2.030	15.83	0.07	6.4	93.6	0.0	-1.58	1.41	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7LJC	23390	2021-09-02	2021-01-28	3.0	2.23	—	2.1	0.022	1.12	0.0	0.52	9.06	0.01	2.282	5.07	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	1.11	0.0	0.16	15.05	0.01	2.115	16.40	2.68	2.6	97.4	0.0	0.52	1.25	0.76	0.78	3.01	8544	1040	6	0	14	0	0	logfile

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