Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BPA	16147	2023-07-05	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.80	0.0	0.04	18.78	0.01	2.140	16.42	0.53	4.4	95.6	0.0	0.14	1.61	0.69	0.66	1.15	10393	1280	6	0	7	0	0	logfile
✔	7TU5	26126	2023-07-17	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.006	0.58	0.0	0.04	16.46	0.00	1.927	5.68	2.06	1.7	98.3	0.0	1.28	0.78	0.87	0.87	5.20	19656	2574	18	0	6	6	0	logfile
✔	7UWL	26835	2023-07-05	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.04	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.004	0.80	0.0	0.05	16.76	0.01	2.078	15.76	0.63	8.1	91.9	0.0	-1.62	0.45	0.69	0.66	1.57	10100	1236	16	0	22	0	0	logfile
✔	7Z1Z	14453	2023-07-16	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.50	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.004	0.76	0.0	0.05	18.28	0.00	2.047	13.95	0.40	3.7	96.3	0.0	-0.02	0.74	0.68	0.68	1.46	35605	4031	36	140	12	0	0	logfile
✔	7S3H	24823	2023-07-05	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.86	0.01	2.234	3.77	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.003	0.64	0.0	0.04	18.76	0.00	2.130	12.44	1.96	2.8	97.2	0.0	-0.10	0.74	0.78	0.76	1.99	9966	1030	4	75	1	0	0	logfile
✔	7oUG	13076	2023-07-07	2021-06-11	3.1	2.33	3.12	1.7	0.004	0.74	0.0	0.04	17.59	0.01	1.769	5.66	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.7	0.003	0.66	0.0	0.04	19.44	0.00	1.919	9.45	0.48	2.1	97.9	0.0	0.04	0.63	0.78	0.79	2.36	15090	1664	16	80	10	8	0	logfile
✔	7U9X	26409	2023-07-14	2022-03-11	2.58	2.84	—	1.7	0.003	0.61	0.0	0.04	14.15	0.00	2.080	9.25	0.11	2.3	97.7	0.0	1.30	0.87	0.83	3.55	1.7	0.003	0.64	0.0	0.04	15.20	0.00	2.114	8.19	0.25	2.9	97.1	0.0	1.66	0.41	0.88	0.87	3.93	138588	17324	12	0	12	0	0	logfile
✔	8D37	27155	2023-07-07	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.52	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.003	0.70	0.0	0.04	18.24	0.00	2.139	11.10	3.36	3.1	96.9	0.0	0.70	1.11	0.67	0.74	1.64	15314	1784	6	48	2	0	0	logfile
✔	7N5F	24188	2023-07-03	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	8CPV	16787	2023-07-16	2023-03-03	1.76	1.73	1.80	1.7	0.006	0.91	0.0	0.07	14.41	0.01	2.182	2.58	0.00	1.0	99.0	0.0	2.15	0.78	0.84	8.93	1.7	0.002	0.49	0.0	0.03	14.99	0.00	2.274	3.00	0.00	1.8	98.2	0.0	4.87	1.19	0.81	0.87	8.51	35855	4152	72	0	38	1737	0	logfile
✔	7UA4	26414	2023-07-24	2022-03-11	2.93	3.30	—	1.7	0.003	0.71	0.0	0.04	14.43	0.01	1.425	10.26	1.34	3.6	96.3	0.1	1.05	0.87	0.82	3.16	1.7	0.003	0.67	1.0	0.04	15.15	0.00	2.076	9.43	0.41	3.7	96.2	0.1	1.21	1.23	0.88	0.85	3.21	147856	18472	16	0	20	0	0	logfile
✔	7L1Q	23115	2023-07-11	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.68	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.003	0.80	0.0	0.05	17.82	0.01	1.889	15.87	0.82	3.4	96.5	0.0	-0.23	1.90	0.73	0.73	1.36	24204	3118	13	0	13	0	0	logfile
✔	8CPS	16784	2023-07-16	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile
✔	7Z0o	14428	2023-07-06	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.60	0.0	0.04	21.27	0.00	2.148	9.25	3.29	2.0	98.0	0.0	1.65	0.48	0.77	0.79	3.26	11864	1256	10	78	0	0	0	logfile
✔	8CPX	16789	2023-07-16	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.7	0.002	0.52	0.0	0.04	15.88	0.00	2.212	2.81	1.31	1.8	98.2	0.0	4.58	0.39	0.78	0.85	7.90	35827	4152	72	0	38	1709	0	logfile
✔	7MW6	24064	2023-07-16	2021-05-15	3.22	2.55	—	1.7	0.005	0.84	1.0	0.09	12.90	0.01	1.556	11.05	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.7	0.004	0.74	0.0	0.05	14.42	0.01	2.123	11.72	0.19	5.9	93.5	0.6	-0.57	0.44	0.80	0.75	2.80	35247	4446	45	0	87	0	0	logfile
✔	7XA3	33086	2023-07-05	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.17	0.00	2.192	9.41	2.38	3.4	96.6	0.0	1.61	1.17	0.78	0.78	2.75	9591	1220	6	0	0	0	0	logfile
✔	7N8o	24239	2023-07-04	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✔	7T9i	25758	2023-07-11	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.76	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.67	0.0	0.04	15.11	0.00	1.904	9.43	2.50	6.3	93.7	0.0	-0.52	1.14	0.74	0.72	2.51	23529	1532	11	0	8	0	11557	logfile
✔	7M3G	23654	2023-07-06	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.07	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.004	0.61	0.0	0.04	17.55	0.00	2.167	4.31	2.22	3.7	96.3	0.0	-0.24	0.33	0.85	0.87	3.45	13298	1627	11	0	41	0	0	logfile

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