Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NA7	24267	2023-02-18	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	12.93	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.79	1.0	0.07	15.85	0.00	2.129	9.26	2.34	2.5	97.5	0.0	0.49	0.54	0.81	0.82	3.65	9036	1142	7	0	2	0	0	logfile
✔	7TDF	25827	2023-02-26	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.71	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.004	0.59	0.0	0.04	15.48	0.00	2.065	5.37	0.95	2.5	97.5	0.0	2.22	1.13	0.76	0.81	3.66	19566	1188	2	0	0	0	9792	logfile
✔	7E9G	31031	2023-02-24	2021-03-04	3.5	2.34	—	3.1	0.004	0.59	0.0	0.10	11.66	0.00	2.196	9.64	0.00	3.8	96.2	0.0	-3.17	0.70	0.67	1.96	1.9	0.004	0.66	0.0	0.04	14.64	0.00	2.144	15.11	0.49	6.0	94.0	0.0	-1.46	0.67	0.72	0.71	1.96	18816	2557	10	0	3	0	0	logfile
✔	7SC8	25029	2023-02-22	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	6Xi8	22191	2023-02-17	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.49	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.004	0.90	0.0	0.05	17.20	0.01	2.175	17.74	0.97	9.0	91.0	0.0	-2.43	1.23	0.69	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7P6A	13223	2023-02-17	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	7XBK	33104	2023-02-25	2022-03-21	3.7	2.43	3.78	1.9	0.005	0.86	0.0	0.05	15.01	0.01	2.095	5.74	0.00	2.9	97.0	0.0	-1.71	0.69	0.63	1.49	1.9	0.004	0.74	0.0	0.05	17.64	0.00	1.818	17.19	0.59	2.4	97.6	0.0	0.15	0.72	0.69	0.69	1.64	25745	3139	19	0	33	0	0	logfile
✔	7UWM	26836	2023-02-18	2022-05-03	2.5	2.14	2.51	1.9	0.003	0.57	0.0	0.04	18.13	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.002	0.55	0.0	0.04	18.27	0.00	2.114	7.45	4.39	2.9	97.1	0.0	-0.44	0.23	0.80	0.79	2.29	7972	967	9	0	9	0	0	logfile
✔	7UM5	26597	2023-02-18	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.57	0.0	0.04	11.84	0.00	2.281	2.29	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.14	0.00	2.252	3.96	1.06	4.1	95.9	0.0	0.30	0.34	0.83	0.83	3.86	8277	1104	6	0	1	1	0	logfile
✔	7L1S	23117	2023-02-24	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.65	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.9	0.003	0.84	0.0	0.05	17.89	0.01	1.910	18.19	0.78	4.3	95.7	0.0	-0.16	1.69	0.65	0.69	0.79	24176	3118	12	0	11	0	0	logfile
✔	7E9H	31032	2023-02-22	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.04	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.003	0.70	0.0	0.04	14.89	0.00	2.095	14.63	0.54	4.7	95.3	0.0	-0.84	2.00	0.72	0.68	—	16847	2309	8	0	0	0	0	logfile
✔	7WiC	32528	2023-02-19	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	7S8o	24899	2023-02-18	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7RCV	24407	2023-02-22	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.10	20.33	0.01	1.915	13.92	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.004	0.81	0.0	0.05	18.81	0.01	2.061	12.36	1.93	2.6	97.4	0.0	0.83	0.91	0.81	0.84	5.21	54656	5544	114	0	228	1236	0	logfile
✔	7NJ1	12369	2023-02-20	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.21	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.51	0.00	2.141	11.09	1.36	6.1	93.7	0.1	0.95	0.58	0.77	0.76	1.93	11096	1501	2	0	0	0	0	logfile
✔	7UQX	26701	2023-02-19	2022-04-20	3.3	2.35	3.18	2.0	0.002	0.50	0.0	0.04	10.15	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.003	0.61	0.0	0.04	14.05	0.00	2.149	12.36	0.29	4.0	96.0	0.0	0.03	0.95	0.74	0.75	2.83	9491	1154	5	2	5	0	0	logfile
✔	8AG5	15416	2023-02-21	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.51	0.0	0.04	17.77	0.00	2.178	6.90	0.45	3.7	96.3	0.0	0.53	0.87	0.76	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	6ZGL	11210	2023-02-21	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7N5E	24187	2023-02-22	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.58	0.0	0.04	16.11	0.00	2.127	6.31	1.10	1.8	98.2	0.0	2.74	0.58	0.78	0.79	3.16	17915	2176	14	0	7	0	0	logfile
✔	8E9W	27966	2023-02-18	2022-08-27	2.69	2.11	2.70	1.9	0.004	0.67	0.0	0.04	12.89	0.00	2.210	7.31	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.54	0.0	0.04	15.58	0.00	2.160	7.61	1.60	2.8	97.2	0.0	0.74	0.35	0.80	0.81	2.82	8529	1123	6	0	1	0	0	logfile

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