Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WP9	32679	2022-05-15	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.09	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.64	0.0	0.05	16.42	0.00	2.068	8.99	2.25	5.0	95.0	0.0	-1.52	1.00	0.75	0.79	2.39	25077	3141	13	0	28	0	0	logfile
✔	7S8M	24897	2022-05-12	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.94	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.56	0.0	0.04	15.00	0.00	2.213	6.94	1.95	4.2	95.8	0.0	1.25	0.33	0.81	0.82	3.88	8346	1102	6	0	0	0	0	logfile
✔	7MW5	24063	2022-05-16	2021-05-15	3.42	3.24	—	2.0	0.003	0.69	0.0	0.05	15.22	0.01	2.140	14.32	0.11	8.0	91.5	0.6	-1.83	0.84	0.79	2.29	2.0	0.007	0.76	1.0	0.05	16.40	0.01	2.094	17.24	0.22	10.0	89.6	0.4	-1.65	1.14	0.84	0.81	2.04	33635	4242	41	0	83	0	0	logfile
✔	7QE7	13931	2022-05-15	2021-12-01	2.9	2.22	2.97	2.0	0.005	0.64	1.0	0.04	13.72	0.00	2.201	10.30	0.12	4.1	95.9	0.0	-2.47	0.78	0.80	2.70	2.0	0.003	0.71	1.0	0.04	17.27	0.00	2.065	11.67	1.73	3.2	96.8	0.0	0.90	1.18	0.77	0.80	2.24	71432	8928	24	0	6	0	0	logfile
✔	5FTK	3296	2022-05-16	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.10	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.008	1.12	1.0	0.05	18.03	0.01	2.074	19.63	4.07	8.9	91.0	0.1	-2.22	1.09	0.49	0.68	1.94	34374	4338	18	0	12	96	0	logfile
✔	5FTJ	3295	2022-05-16	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.004	0.84	0.0	0.05	18.68	0.01	2.113	14.60	2.17	6.1	93.7	0.1	-0.87	1.23	0.46	0.66	1.57	34602	4338	18	0	18	120	0	logfile
✔	7EZM	31389	2022-05-13	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.15	13.21	0.01	2.228	5.06	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.004	0.78	0.0	0.07	16.17	0.00	2.095	11.52	2.51	2.1	97.9	0.0	0.54	0.63	0.78	0.80	2.94	9008	1171	6	0	0	0	0	logfile
✔	7LVQ	23540	2022-05-13	2021-02-26	2.9	2.12	2.86	2.0	0.024	1.33	1.0	0.09	14.76	0.01	1.920	5.41	0.66	6.4	93.5	0.1	-3.20	0.55	0.77	4.09	2.0	0.003	0.65	0.0	0.04	17.22	0.00	2.029	8.32	1.42	3.0	97.0	0.0	0.02	1.04	0.57	0.82	3.35	9767	1226	6	1	5	0	0	logfile
✔	7S8L	24896	2022-05-12	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.57	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.55	0.01	2.252	3.26	1.34	3.5	96.5	0.0	1.25	0.35	0.85	0.84	3.95	8177	1096	6	0	0	0	0	logfile
✔	6YL3	10835	2022-05-22	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.58	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.78	0.0	0.05	16.28	0.01	1.724	5.71	1.55	4.1	95.8	0.1	-0.22	0.53	0.81	0.86	7.04	150156	9552	84	0	24	3672	73044	logfile
✔	7LJC	23390	2022-05-12	2021-01-28	3.0	2.23	—	2.1	0.005	1.00	0.0	0.07	8.58	0.01	2.282	5.42	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.63	0.0	0.04	14.85	0.00	2.147	11.14	1.45	2.5	97.5	0.0	0.50	1.23	0.76	0.78	3.06	8544	1040	6	0	14	0	0	logfile
✔	7Q2X	13783	2022-05-14	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.41	0.00	2.035	7.71	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.005	0.72	0.0	0.04	20.34	0.00	1.862	10.75	2.42	3.4	96.6	0.0	1.82	1.68	0.78	0.79	2.18	18240	2098	8	72	6	0	0	logfile
✔	6WWR	21945	2022-05-13	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.49	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.004	0.67	0.0	0.04	16.99	0.00	1.916	6.86	1.72	3.9	96.1	0.0	-0.28	1.08	0.62	0.84	3.85	9719	1220	6	1	4	0	0	logfile
✔	7B18	11981	2022-05-16	2020-11-24	2.62	2.27	2.75	2.1	0.007	0.84	0.0	0.06	12.74	0.01	2.028	13.06	0.40	4.1	95.8	0.1	-0.36	0.72	0.71	3.05	2.0	0.008	0.87	1.0	0.05	15.77	0.00	2.086	13.90	2.32	4.6	95.4	0.0	-0.29	0.45	0.74	0.74	2.62	30105	3814	13	0	44	0	0	logfile
✔	6YBQ	10771	2022-05-16	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	4.72	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.72	0.0	0.05	15.91	0.00	2.108	4.76	0.41	2.4	97.6	0.0	0.00	0.46	0.84	0.89	6.08	34092	4289	36	0	12	871	0	logfile
✔	6WWo	21942	2022-05-13	2020-05-09	2.8	2.07	2.79	1.9	0.011	1.28	3.0	0.06	15.86	0.02	1.958	6.13	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.004	0.69	0.0	0.04	17.72	0.00	1.941	8.00	2.75	3.7	96.2	0.1	-0.57	2.43	0.60	0.81	3.89	9784	1230	6	1	5	0	0	logfile
✔	7VDA	31912	2022-05-15	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	8.23	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.003	0.60	0.0	0.04	18.09	0.00	2.073	9.24	3.21	2.5	97.5	0.0	0.92	0.42	0.66	0.83	4.25	23292	2976	6	0	0	0	0	logfile
✔	7JSX	22462	2022-05-17	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.012	1.10	0.0	0.04	14.60	0.00	2.135	9.41	0.80	2.4	97.6	0.0	1.01	0.64	0.82	0.89	6.51	38813	4832	40	0	0	1141	0	logfile
✔	7NJN	12392	2022-05-15	2021-02-17	2.64	2.61	—	2.0	0.004	0.51	0.0	0.04	14.52	0.00	1.931	6.50	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.005	0.54	0.0	0.04	15.84	0.00	1.682	6.81	0.55	2.5	97.4	0.1	1.46	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile
✔	6WWS	21946	2022-05-13	2020-05-09	2.7	2.11	2.68	2.0	0.010	1.28	8.0	0.07	15.94	0.02	2.077	8.13	3.06	6.5	93.1	0.3	-3.99	0.59	0.78	4.41	2.0	0.005	0.64	0.0	0.04	17.50	0.00	1.943	6.29	2.01	4.0	96.0	0.0	-0.68	1.05	0.61	0.84	4.31	9696	1216	6	1	4	0	0	logfile

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