Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UFR	20759	2021-12-01	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.52	0.89	5.06	4420	630	20	0	0	90	0	logfile
✔	7AUE	11927	2021-12-01	2020-11-02	2.97	2.67	—	2.8	0.006	0.79	2.0	0.05	13.82	0.01	2.077	1.67	0.11	4.2	95.8	0.0	-4.47	0.62	0.84	3.98	2.8	0.003	0.59	2.0	0.04	16.60	0.00	2.223	4.55	1.28	3.2	96.8	0.0	-0.78	1.79	0.63	0.85	3.24	8755	1129	8	0	5	1	0	logfile
✔	7D4F	30572	2021-12-01	2020-09-23	2.57	2.76	—	2.7	0.011	0.98	0.0	0.06	13.80	0.01	1.326	5.95	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.002	0.51	0.0	0.04	16.07	0.00	2.216	5.79	1.81	1.7	98.3	0.0	0.46	0.44	0.75	0.88	3.47	9534	1181	4	0	4	0	0	logfile
✔	6W6M	21559	2021-12-01	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.72	2.71	2.8	0.004	0.78	0.0	0.05	14.60	0.01	2.143	6.54	3.05	6.3	93.7	0.0	-1.25	1.69	0.73	0.82	2.55	43638	5768	14	0	0	0	0	logfile
✔	7MHY	23836	2021-12-01	2021-04-16	2.7	2.86	—	2.8	0.115	2.81	1.0	0.18	22.85	0.01	2.160	8.28	0.54	3.3	96.7	0.0	1.01	0.65	0.88	3.72	2.8	0.005	1.07	0.0	0.04	22.75	0.00	2.015	41.04	1.89	3.3	96.7	0.0	1.21	0.27	0.62	0.89	3.30	7904	912	6	0	18	15	0	logfile
✔	6WBV	21599	2021-12-02	2020-03-27	2.5	2.82	2.57	2.7	0.006	0.94	2.0	0.05	15.30	0.01	1.797	7.03	4.26	3.5	96.5	0.0	-0.54	0.67	0.87	4.32	2.8	0.007	1.07	0.0	0.04	16.43	0.01	1.950	6.66	2.66	2.3	97.7	0.0	1.97	0.96	0.54	0.59	3.80	6860	892	7	0	4	11	0	logfile
✔	7RPi	24615	2021-12-01	2021-08-03	2.5	2.74	2.62	2.8	0.016	1.82	2.0	0.11	13.77	0.01	2.170	0.93	0.12	2.0	98.0	0.0	-0.69	0.50	0.73	4.35	2.8	0.003	0.63	0.0	0.04	15.23	0.00	2.235	5.73	0.74	1.6	98.4	0.0	1.66	1.00	0.60	0.82	3.00	8526	926	1	0	35	43	0	logfile
✔	7EZ2	31386	2021-12-01	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	2.9	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.27	0.00	0.0	0.0	0.0	—	1.04	0.70	0.82	—	8698	0	3	406	31	0	0	logfile
✔	7BX7	30235	2021-12-01	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	6SKi	10225	2021-12-01	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.66	0.86	4.48	4434	569	2	0	0	0	0	logfile
✔	6VSC	21376	2021-12-01	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.30	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.75	0.0	0.05	18.24	0.01	2.083	17.03	3.77	0.2	99.7	0.1	0.63	1.23	0.87	0.84	3.28	9670	1175	5	0	0	0	0	logfile
✔	7A5J	11645	2021-12-01	2020-08-21	3.1	2.70	3.04	3.0	0.009	0.98	0.0	0.05	17.10	0.01	1.265	4.14	0.84	5.2	94.7	0.2	-4.41	0.63	0.73	2.66	2.9	0.006	0.73	1.0	0.04	17.75	0.01	1.400	10.73	0.51	4.4	95.6	0.0	-0.76	0.53	0.65	0.79	2.48	106132	8540	71	1694	205	0	0	logfile
✔	7N72	24217	2021-12-01	2021-06-09	2.5	3.08	2.57	2.9	0.007	0.87	0.0	0.06	13.12	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.004	0.61	0.0	0.04	14.47	0.01	1.812	5.79	1.07	2.4	97.6	0.0	1.61	0.42	0.66	0.82	2.83	7705	1030	1	0	11	5	0	logfile
✔	7BZX	30262	2021-12-01	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	6K41	9911	2021-12-01	2019-05-23	2.9	2.88	—	2.9	0.009	1.09	0.0	0.06	10.20	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.84	4.09	2.9	0.003	0.59	0.0	0.04	15.55	0.00	2.071	6.25	3.29	3.4	96.6	0.0	0.71	0.69	0.75	0.84	3.17	8430	1077	6	0	1	0	0	logfile
✔	6LN7	0926	2021-12-01	2019-12-28	2.8	2.90	2.71	2.9	0.006	0.62	0.0	0.04	11.52	0.00	2.101	5.64	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.008	0.98	0.0	0.04	16.55	0.00	2.104	7.22	1.39	2.4	97.6	0.0	0.35	0.44	0.72	0.87	3.03	7840	1011	1	0	4	0	0	logfile
✔	6LN5	0924	2021-12-01	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.60	0.0	0.04	12.21	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.002	0.54	0.0	0.04	15.95	0.00	2.262	6.21	1.50	1.4	98.6	0.0	0.84	1.33	0.69	0.85	2.73	7840	1011	1	0	4	0	0	logfile
✔	7RPK	24617	2021-12-01	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.23	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.002	0.59	0.0	0.04	15.70	0.00	2.211	5.50	1.24	2.3	97.7	0.0	2.10	1.02	0.72	0.88	3.63	10018	1104	5	0	40	42	0	logfile
✔	6LLY	0915	2021-12-01	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.26	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.002	0.57	0.0	0.04	15.50	0.00	1.263	8.69	1.75	2.9	97.1	0.0	-0.03	0.48	0.66	0.79	1.81	7774	1006	1	0	2	0	0	logfile
✔	7CMV	30411	2021-12-01	2020-07-29	2.7	2.91	—	2.9	0.008	0.50	0.0	0.04	12.72	0.00	2.032	3.78	0.00	1.5	98.5	0.0	2.95	0.61	0.78	2.85	2.9	0.003	0.54	0.0	0.04	15.56	0.00	2.140	5.67	1.87	2.0	98.0	0.0	1.94	0.47	0.64	0.84	3.28	8775	1123	5	0	1	0	0	logfile

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