Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N8o	24239	2023-11-14	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✔	7VD9	31911	2023-11-16	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7M3G	23654	2023-11-15	2021-03-18	2.5	2.29	—	1.8	0.014	0.96	0.0	0.06	17.07	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.59	0.0	0.04	17.55	0.00	2.171	4.46	2.43	3.7	96.3	0.0	-0.23	0.33	0.85	0.87	3.51	13298	1627	11	0	41	0	0	logfile
✔	7Y5S	33623	2023-11-15	2022-06-17	3.0	2.29	2.98	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.004	0.73	0.0	0.05	15.70	0.00	2.173	15.21	3.22	8.5	91.5	0.0	-2.15	1.35	0.79	0.79	3.18	11535	1515	3	0	0	0	0	logfile
✔	7TDF	25827	2023-11-19	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.71	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.004	0.59	0.0	0.04	15.48	0.00	2.065	5.42	0.95	2.5	97.5	0.0	2.22	1.13	0.76	0.81	3.66	19566	1188	2	0	0	0	9792	logfile
✔	8EWi	28646	2023-11-14	2022-10-23	3.5	2.81	3.63	2.1	0.003	0.53	0.0	0.04	12.21	0.00	2.153	14.61	5.25	5.7	94.2	0.1	-0.22	0.68	0.66	0.83	1.9	0.003	0.74	0.0	0.04	14.47	0.00	2.069	17.19	0.51	5.9	94.0	0.2	-0.30	0.52	0.68	0.65	0.65	55708	7100	8	0	12	0	0	logfile
✔	7QQ3	14121	2023-11-20	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.76	5.0	0.05	14.94	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.9	0.004	0.88	4.0	0.04	15.29	0.01	1.784	7.34	1.88	3.8	96.0	0.2	-0.53	1.23	0.64	0.70	4.00	87594	2903	35	3016	154	28	0	logfile
✔	7E9G	31031	2023-11-18	2021-03-04	3.5	2.34	—	3.1	0.004	0.59	0.0	0.10	11.66	0.00	2.196	9.69	0.00	3.8	96.2	0.0	-3.17	0.70	0.67	1.96	1.9	0.004	0.66	0.0	0.04	14.64	0.00	2.144	15.22	0.49	6.0	94.0	0.0	-1.46	0.67	0.72	0.71	1.96	18816	2557	10	0	3	0	0	logfile
✔	7UA1	26412	2023-11-20	2022-03-11	2.99	3.02	—	1.9	0.003	0.62	0.0	0.04	14.11	0.00	1.785	8.77	0.29	3.3	96.6	0.1	1.20	0.85	0.80	2.97	1.9	0.003	0.67	0.0	0.04	15.27	0.00	2.125	9.07	0.44	4.0	96.0	0.1	1.12	0.44	0.87	0.84	3.34	138680	17324	12	0	16	0	0	logfile
✔	7P6A	13223	2023-11-13	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	7WPC	32682	2023-11-14	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	14.23	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.003	0.61	0.0	0.04	17.18	0.00	1.955	9.72	1.62	3.9	96.1	0.0	-0.76	1.32	0.74	0.81	2.91	8057	980	6	0	9	0	0	logfile
✔	8AB6	15312	2023-11-21	2022-07-04	2.0	1.80	1.92	1.9	0.010	1.60	28.0	0.11	16.94	0.01	2.091	3.07	1.89	2.3	97.7	0.0	-0.82	0.68	0.86	6.61	1.9	0.003	0.59	0.0	0.04	16.51	0.00	2.033	3.75	0.65	1.6	98.4	0.0	2.05	0.98	0.72	0.87	6.11	32914	3878	53	0	30	1326	0	logfile
✔	7WiC	32528	2023-11-14	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	6ZGL	11210	2023-11-16	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7EFC	31083	2023-11-13	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	15.03	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.003	0.69	0.0	0.04	14.60	0.00	1.907	5.77	0.54	2.5	97.5	0.0	0.68	0.91	0.80	0.85	5.94	4004	480	4	0	4	156	0	logfile
✔	7VZ4	32220	2023-11-15	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.005	0.70	0.0	0.04	28.42	0.01	2.320	4.08	0.49	0.5	99.5	0.0	2.76	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	7EFD	31084	2023-11-13	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✔	7USL	26738	2023-11-19	2022-04-25	2.7	2.28	—	1.9	0.004	0.61	0.0	0.05	13.68	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.006	0.73	0.0	0.05	16.01	0.01	2.094	7.90	2.39	4.5	95.5	0.0	-0.76	0.37	0.78	0.78	3.09	19065	2464	10	0	49	0	0	logfile
✔	7E9H	31032	2023-11-16	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.04	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.003	0.70	0.0	0.04	14.89	0.00	2.095	14.69	0.54	4.7	95.3	0.0	-0.84	2.00	0.72	0.68	—	16847	2309	8	0	0	0	0	logfile
✔	8P5U	17453	2023-11-13	2023-05-24	2.17	2.20	2.21	1.9	0.032	1.60	0.0	0.08	15.06	0.01	1.601	3.66	0.31	3.0	97.0	0.0	-1.97	0.91	0.92	5.23	1.9	0.004	0.58	0.0	0.04	17.05	0.00	1.953	4.75	0.78	2.4	97.6	0.0	0.91	0.40	0.89	0.89	4.37	52878	6714	12	0	24	0	0	logfile

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