Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJ1	12369	2022-07-03	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	2.0	0.004	0.77	0.0	0.04	16.50	0.01	2.140	11.45	1.91	6.1	93.8	0.1	0.70	0.57	0.77	0.76	2.04	11096	1501	2	0	0	0	0	logfile
✔	7RZS	24776	2022-07-02	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.43	0.0	0.04	15.95	0.00	2.318	4.66	0.71	0.0	100.0	0.0	5.82	1.18	0.78	0.81	1.27	2445	324	6	0	0	0	0	logfile
✔	7TiK	25912	2022-07-02	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.80	1.38	2565	339	6	0	0	0	0	logfile
✔	7RZR	24775	2022-07-02	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.82	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZV	24779	2022-07-02	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.82	1.88	2562	339	6	0	0	0	0	logfile
✔	7LT3	23510	2022-07-06	2021-02-18	4.6	3.52	—	4.3	0.012	1.33	34.0	0.08	16.13	0.01	2.017	25.66	1.63	10.7	89.2	0.1	-2.30	0.59	0.56	—	2.0	0.004	0.84	0.0	0.05	15.24	0.01	2.078	21.48	0.01	6.5	93.5	0.0	-0.79	1.45	0.60	0.65	—	93244	11261	22	122	42	0	0	logfile
✔	7WPA	32680	2022-07-06	2022-01-23	2.77	2.26	—	2.1	0.003	0.76	2.0	0.05	14.12	0.01	2.327	3.44	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	2.0	0.005	0.70	0.0	0.05	16.69	0.01	2.180	9.60	2.78	5.8	94.1	0.1	-1.52	0.65	0.76	0.80	2.87	30444	3774	20	0	47	0	0	logfile
✔	7RQS	24635	2022-07-03	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.94	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.63	0.0	0.04	15.66	0.01	1.982	12.21	0.53	9.4	90.5	0.1	-1.03	0.59	0.70	0.69	2.57	7792	1074	1	0	1	0	0	logfile
✔	7P6B	13224	2022-07-03	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	7NJN	12392	2022-07-05	2021-02-17	2.64	2.61	—	2.0	0.004	0.51	0.0	0.04	14.52	0.00	1.931	6.50	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.005	0.54	0.0	0.04	15.84	0.00	1.682	6.81	0.55	2.5	97.4	0.1	1.46	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile
✔	7TZF	26208	2022-07-03	2022-02-15	2.4	2.00	2.39	2.3	0.004	0.52	0.0	0.04	14.53	0.00	2.252	5.13	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.004	0.63	0.0	0.04	16.84	0.00	2.207	6.55	1.72	1.9	98.1	0.0	0.56	0.84	0.56	0.80	4.91	10342	1272	13	0	19	25	0	logfile
✔	7LJC	23390	2022-07-03	2021-01-28	3.0	2.23	—	2.1	0.005	1.00	0.0	0.07	8.58	0.01	2.282	5.42	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.63	0.0	0.04	14.85	0.00	2.147	11.14	1.45	2.5	97.5	0.0	0.50	1.23	0.76	0.78	3.06	8544	1040	6	0	14	0	0	logfile
✔	6WWo	21942	2022-07-03	2020-05-09	2.8	2.07	2.79	1.9	0.011	1.28	3.0	0.06	15.86	0.02	1.958	6.13	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.004	0.69	0.0	0.04	17.72	0.00	1.941	8.00	2.75	3.7	96.2	0.1	-0.57	2.43	0.60	0.81	3.89	9784	1230	6	1	5	0	0	logfile
✔	6WWR	21945	2022-07-03	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.49	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.004	0.67	0.0	0.04	16.99	0.00	1.916	6.86	1.72	3.9	96.1	0.0	-0.28	1.08	0.62	0.84	3.85	9719	1220	6	1	4	0	0	logfile
✔	7WP9	32679	2022-07-05	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.09	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.64	0.0	0.05	16.42	0.00	2.068	8.99	2.25	5.0	95.0	0.0	-1.52	1.00	0.75	0.79	2.39	25077	3141	13	0	28	0	0	logfile
✔	7WPF	32685	2022-07-07	2022-01-23	2.92	2.31	—	2.1	0.003	0.66	10.0	0.09	11.76	0.00	2.025	5.38	0.03	4.1	95.9	0.0	-0.16	0.65	0.65	2.36	2.0	0.006	0.83	0.0	0.06	14.85	0.01	1.942	10.08	2.11	5.0	95.0	0.0	-0.38	0.50	0.67	0.71	2.23	36202	4743	17	0	39	0	0	logfile
✔	7EZM	31389	2022-07-03	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.15	13.21	0.01	2.228	5.06	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.004	0.78	0.0	0.07	16.17	0.00	2.095	11.52	2.51	2.1	97.9	0.0	0.54	0.63	0.78	0.80	2.94	9008	1171	6	0	0	0	0	logfile
✔	7N1W	24125	2022-07-05	2021-05-28	3.33	2.63	—	2.0	0.013	1.77	17.0	0.12	13.88	0.01	1.951	6.26	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	2.0	0.004	0.74	0.0	0.05	15.93	0.00	2.023	11.64	0.35	4.6	95.4	0.0	-0.21	1.57	0.84	0.82	2.34	26810	3257	35	0	95	0	0	logfile
✔	7QKY	14057	2022-07-03	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.40	0.84	7.35	5760	396	6	0	0	0	2862	logfile
✔	7L1R	23116	2022-07-05	2020-12-15	3.1	2.19	—	2.1	0.011	1.76	28.0	0.11	14.03	0.01	1.965	4.08	3.32	3.3	96.7	0.0	-0.59	0.65	0.71	2.77	2.0	0.005	0.76	0.0	0.05	18.17	0.01	1.800	9.94	0.90	4.0	96.0	0.0	-0.12	1.13	0.78	0.80	2.48	24199	3118	13	0	12	0	0	logfile

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