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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Y7K | 33668 | 2024-04-05 | 2022-06-22 | 4.4 | 4.96 | 5.46 | 4.3 | 0.010 | 1.63 | 0.0 | 0.07 | 13.11 | 0.01 | 2.215 | 33.93 | 3.90 | 10.3 | 86.1 | 3.6 | -2.50 | 0.71 | 0.63 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.04 | 11.35 | 0.00 | 2.166 | 15.16 | 0.35 | 7.5 | 92.3 | 0.2 | -1.11 | 1.42 | 0.73 | 0.68 | — | 2942 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DFM | 27408 | 2024-04-09 | 2022-06-22 | 3.45 | 4.16 | 3.29 | 3.6 | 0.008 | 1.14 | 0.0 | 0.07 | 12.32 | 0.01 | 2.387 | 1.31 | 0.00 | 2.0 | 98.0 | 0.0 | -0.37 | 0.88 | 0.83 | 3.25 | 3.6 | 0.004 | 0.59 | 0.0 | 0.04 | 11.36 | 0.00 | 2.036 | 4.91 | 0.36 | 2.9 | 97.1 | 0.0 | 1.08 | 1.44 | 0.88 | 0.84 | 3.36 | 15966 | 1126 | 10 | 0 | 10 | 0 | 7566 | logfile |
✔ | 7D9T | 30620 | 2024-04-06 | 2020-10-14 | 4.1 | 4.18 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 11.03 | 0.00 | 2.230 | 6.74 | 0.00 | 3.9 | 96.1 | 0.0 | -1.91 | 0.84 | 0.81 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 11.36 | 0.00 | 2.145 | 7.66 | 0.00 | 3.1 | 96.9 | 0.0 | 1.11 | 0.44 | 0.85 | 0.81 | — | 7451 | 1079 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6NAV | 0397 | 2024-04-10 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.005 | 0.66 | 0.0 | 0.04 | 11.36 | 0.00 | 2.106 | 8.25 | 0.00 | 6.6 | 93.4 | 0.0 | -1.06 | 1.52 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L8S | 23235 | 2024-04-09 | 2020-12-31 | 4.3 | 4.42 | 4.07 | 4.3 | 0.022 | 1.74 | 3.0 | 0.15 | 11.45 | 0.01 | 2.287 | 1.20 | 0.00 | 1.3 | 98.7 | 0.0 | 1.27 | 0.78 | 0.80 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 11.37 | 0.00 | 2.244 | 10.48 | 0.20 | 3.1 | 96.9 | 0.0 | -0.03 | 0.93 | 0.78 | 0.82 | — | 16057 | 1713 | 42 | 0 | 315 | 0 | 0 | logfile |
✔ | 5YZ0 | 6862 | 2024-04-15 | 2017-12-11 | 4.7 | 4.90 | — | 4.7 | 0.008 | 1.37 | 6.0 | 0.07 | 11.42 | 0.01 | 2.154 | 17.47 | 0.97 | 15.6 | 82.8 | 1.7 | -4.74 | 0.87 | 0.78 | — | 4.7 | 0.003 | 0.81 | 0.0 | 0.04 | 11.39 | 0.00 | 2.024 | 15.84 | 0.00 | 13.4 | 86.0 | 0.5 | -0.27 | 1.59 | 0.86 | 0.78 | — | 33371 | 5404 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VHY | 8687 | 2024-04-13 | 2017-04-13 | 4.6 | 4.98 | — | 4.7 | 0.007 | 1.12 | 0.0 | 0.04 | 8.41 | 0.01 | 1.831 | 19.00 | 0.17 | 5.2 | 93.0 | 1.8 | -1.87 | 0.77 | 0.64 | — | 4.7 | 0.003 | 0.62 | 0.0 | 0.04 | 11.39 | 0.00 | 2.078 | 14.86 | 0.00 | 4.4 | 95.2 | 0.3 | 0.85 | 5.52 | 0.84 | 0.84 | — | 27572 | 3484 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 7PEo | 13355 | 2024-04-12 | 2021-08-11 | 4.37 | 6.48 | — | 4.4 | 0.009 | 1.63 | 0.0 | 0.13 | 22.19 | 0.02 | 2.206 | 4.00 | 0.60 | 2.5 | 97.5 | 0.0 | -2.52 | 0.90 | 0.86 | — | 4.3 | 0.002 | 0.62 | 0.0 | 0.04 | 11.40 | 0.00 | 2.092 | 8.37 | 0.09 | 2.6 | 97.4 | 0.0 | 1.95 | 1.36 | 0.91 | 0.89 | — | 26278 | 3388 | 42 | 0 | 210 | 0 | 0 | logfile |
✔ | 6MRD | 9196 | 2024-04-15 | 2018-10-12 | 3.82 | 4.44 | — | 3.9 | 0.008 | 0.88 | 0.0 | 0.07 | 10.50 | 0.00 | 1.941 | 43.72 | 0.00 | 9.7 | 90.1 | 0.2 | -2.91 | 0.90 | 0.86 | 1.24 | 3.9 | 0.003 | 0.64 | 1.0 | 0.07 | 11.40 | 0.00 | 1.725 | 60.49 | 0.59 | 9.3 | 90.7 | 0.0 | 0.17 | 0.52 | 0.90 | 0.87 | 1.10 | 34517 | 4396 | 21 | 0 | 14 | 0 | 1477 | logfile |
✔ | 7M64 | 23688 | 2024-04-05 | 2021-03-25 | 4.0 | 4.02 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.07 | 10.07 | 0.00 | 2.451 | 19.77 | 0.00 | 8.7 | 91.3 | 0.0 | -3.84 | 0.52 | 0.75 | — | 4.3 | 0.004 | 0.89 | 0.0 | 0.04 | 11.40 | 0.00 | 2.234 | 7.06 | 0.48 | 5.7 | 94.3 | 0.0 | -4.00 | 1.13 | 0.51 | 0.74 | — | 1850 | 250 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6X35 | 22018 | 2024-04-06 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 11.41 | 0.00 | 2.182 | 7.29 | 0.01 | 2.5 | 97.5 | 0.0 | 1.11 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 7PP6 | 13580 | 2024-04-08 | 2021-09-13 | 3.4 | 4.07 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 12.33 | 0.00 | 1.846 | 6.09 | 0.19 | 9.2 | 90.8 | 0.0 | -2.04 | 0.77 | 0.76 | 1.96 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 11.41 | 0.00 | 1.966 | 7.06 | 0.48 | 8.0 | 92.0 | 0.0 | -1.36 | 0.40 | 0.78 | 0.80 | 1.77 | 66562 | 4592 | 22 | 0 | 28 | 92 | 31702 | logfile |
✔ | 7LRC | 23494 | 2024-04-05 | 2021-02-16 | 2.97 | 4.17 | 2.92 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 8.07 | 0.01 | 1.795 | 5.33 | 0.30 | 0.8 | 99.2 | 0.0 | 3.49 | 0.72 | 0.74 | 3.03 | 3.5 | 0.002 | 0.58 | 0.0 | 0.04 | 11.41 | 0.00 | 1.994 | 9.18 | 1.20 | 0.4 | 99.6 | 0.0 | 3.64 | 0.54 | 0.76 | 0.86 | 3.04 | 6202 | 762 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7JMi | 22395 | 2024-04-08 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.47 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | 4.2 | 0.004 | 0.91 | 0.0 | 0.05 | 11.41 | 0.01 | 1.586 | 21.66 | 0.00 | 11.8 | 88.0 | 0.2 | -3.52 | 0.81 | 0.81 | 0.69 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7K8Y | 22735 | 2024-04-13 | 2020-09-27 | 4.4 | 5.34 | — | 4.4 | 0.003 | 0.55 | 0.0 | 0.05 | 10.96 | 0.00 | 1.137 | 21.70 | 0.04 | 2.8 | 97.0 | 0.3 | -2.11 | 0.80 | 0.77 | — | 4.4 | 0.004 | 0.66 | 0.0 | 0.04 | 11.44 | 0.00 | 2.045 | 19.44 | 0.00 | 5.6 | 94.2 | 0.2 | -0.67 | 1.16 | 0.82 | 0.82 | — | 25560 | 3242 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 8DS6 | 27684 | 2024-04-07 | 2022-07-21 | 4.9 | 4.18 | 4.54 | 3.7 | 0.012 | 1.43 | 0.0 | 0.06 | 10.65 | 0.01 | 2.494 | 0.39 | 0.00 | 1.4 | 98.6 | 0.0 | 1.06 | 0.85 | 0.67 | — | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 11.45 | 0.01 | 2.212 | 9.28 | 0.00 | 2.3 | 97.7 | 0.0 | 1.68 | 1.09 | 0.85 | 0.63 | — | 10135 | 669 | 2 | 0 | 0 | 0 | 5107 | logfile |
✔ | 7KF9 | 22847 | 2024-04-08 | 2020-10-13 | 4.4 | 5.43 | — | 4.5 | 0.021 | 1.88 | 0.0 | 0.12 | 12.39 | 0.01 | 2.470 | 0.89 | 0.43 | 2.4 | 97.6 | 0.0 | 0.37 | 0.68 | 0.77 | — | 4.5 | 0.004 | 0.74 | 0.0 | 0.04 | 11.45 | 0.01 | 2.177 | 22.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.18 | 0.85 | 0.69 | 0.81 | — | 13161 | 1662 | 18 | 0 | 24 | 0 | 0 | logfile |
✔ | 6CS1 | 7579 | 2024-04-12 | 2018-03-19 | 4.6 | 4.79 | 4.84 | 6.8 | 0.006 | 0.92 | 0.0 | 0.06 | 13.39 | 0.01 | 2.229 | 7.26 | 0.00 | 7.2 | 92.8 | 0.0 | -4.20 | 0.61 | 0.31 | — | 4.6 | 0.004 | 0.84 | 0.0 | 0.05 | 11.48 | 0.01 | 1.983 | 23.93 | 0.00 | 9.1 | 90.9 | 0.0 | -2.58 | 1.88 | 0.71 | 0.57 | — | 25995 | 3202 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 8DFQ | 27411 | 2024-04-08 | 2022-06-22 | 3.96 | 4.53 | 3.89 | 4.0 | 0.007 | 1.12 | 0.0 | 0.06 | 13.05 | 0.01 | 2.270 | 0.98 | 0.15 | 1.8 | 98.2 | 0.0 | -1.00 | 0.84 | 0.79 | 2.57 | 4.0 | 0.004 | 0.64 | 0.0 | 0.04 | 11.48 | 0.00 | 2.109 | 3.84 | 0.60 | 5.1 | 94.9 | 0.0 | -0.12 | 0.56 | 0.84 | 0.81 | 1.79 | 14233 | 1114 | 8 | 0 | 7 | 0 | 6514 | logfile |
✔ | 5ACo | 3121 | 2024-04-11 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.98 | 3.0 | 0.11 | 17.67 | 0.02 | 1.986 | 10.73 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.007 | 0.95 | 0.0 | 0.05 | 11.49 | 0.00 | 2.046 | 17.42 | 0.00 | 8.4 | 91.1 | 0.5 | -1.31 | 1.61 | 0.82 | 0.84 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |