Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6U68	20662	2021-06-02	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.46	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.4	0.005	0.91	0.0	0.05	6.03	0.00	2.155	7.08	0.00	14.5	85.5	0.0	-2.32	1.51	0.78	0.82	—	10489	2133	8	0	0	0	0	logfile
✔	6PWC	20505	2021-06-01	2019-07-22	4.9	5.55	—	4.5	0.003	0.70	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.69	0.0	0.04	6.37	0.00	2.144	12.83	0.00	6.8	93.2	0.0	-0.36	2.68	0.64	0.77	—	5879	1055	5	0	0	0	0	logfile
✔	6LHV	0900	2021-06-02	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.60	—	4.4	0.009	1.32	0.0	0.04	6.43	0.00	2.066	51.11	0.00	0.0	0.0	0.0	—	3.59	0.83	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6oLL	20116	2021-06-03	2019-04-16	4.1	4.59	—	4.4	0.004	1.06	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.59	—	4.4	0.004	0.87	0.0	0.05	6.46	0.00	2.127	10.06	0.00	16.4	83.6	0.0	-3.58	2.19	0.74	0.68	—	10426	2114	6	0	0	0	0	logfile
✔	5VCA	8659	2021-06-02	2017-03-31	4.8	6.04	—	5.9	0.021	2.65	50.0	0.15	5.91	0.01	1.097	1.93	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.005	0.76	0.0	0.04	6.50	0.00	2.086	8.62	0.00	12.1	87.5	0.4	-1.20	2.94	0.75	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	6LHW	0901	2021-06-02	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.51	0.00	2.045	44.59	0.00	0.0	0.0	0.0	—	3.27	0.81	0.80	—	7644	0	3	0	1541	0	0	logfile
✔	6oLK	20115	2021-06-03	2019-04-16	4.0	4.14	—	4.1	0.005	1.05	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.004	0.85	0.0	0.05	6.56	0.00	2.044	8.89	0.00	14.1	85.9	0.0	-1.97	1.52	0.63	0.60	—	10323	2094	6	0	0	0	0	logfile
✔	7JLX	22383	2021-06-01	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	6.71	0.00	2.307	8.03	0.00	15.2	84.8	0.0	-1.73	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6ZD0	11172	2021-06-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	9.96	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.004	0.82	0.0	0.04	6.73	0.00	2.159	14.82	0.00	16.1	83.7	0.2	-3.80	2.56	0.54	0.53	—	7962	1611	6	0	0	0	0	logfile
✔	6VE3	21153	2021-06-03	2019-12-28	4.3	4.68	4.39	4.4	0.005	1.17	2.0	0.07	5.96	0.01	2.179	22.31	0.00	3.4	96.3	0.3	-0.31	0.81	0.69	—	4.4	0.003	0.84	0.0	0.05	6.77	0.00	2.100	9.99	0.00	10.2	89.8	0.0	-1.84	2.00	0.82	0.82	—	22484	4578	14	0	0	0	0	logfile
✔	7JG6	22312	2021-06-02	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.005	1.06	0.0	0.00	6.91	0.01	2.157	2.45	0.00	13.7	86.2	0.1	-1.84	1.69	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7JG7	22313	2021-06-02	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.19	0.0	0.00	7.16	0.01	2.147	2.85	0.00	15.2	84.7	0.1	-1.74	1.67	0.73	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6TNG	10532	2021-06-01	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	10.00	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.03	0.0	0.00	7.60	0.01	2.127	17.88	0.00	25.5	74.4	0.1	-4.07	0.39	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6oDJ	20021	2021-06-03	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.96	0.00	2.119	11.87	0.00	0.0	0.0	0.0	—	0.66	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6PZi	20535	2021-06-01	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	7.87	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.003	0.65	0.0	0.04	8.16	0.00	2.149	6.62	0.00	4.8	95.2	0.0	2.00	0.60	0.68	0.84	—	7985	1412	1	0	1	0	0	logfile
✔	5VLZ	8709	2021-06-03	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.67	—	4.4	0.007	1.17	0.0	0.00	8.24	0.01	2.032	7.27	0.00	15.6	84.4	0.0	-2.81	1.73	0.83	0.80	—	96897	24179	181	0	0	0	0	logfile
✔	7JG9	22315	2021-06-02	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.73	0.0	3.30	7.67	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	3.4	0.006	1.42	0.0	1.21	8.27	0.01	2.099	4.26	0.00	17.2	82.6	0.1	-2.71	1.74	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	6HYP	0309	2021-06-02	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.61	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.003	0.74	0.0	0.04	8.50	0.00	2.107	4.89	0.00	11.3	88.5	0.2	-1.05	0.69	0.76	0.74	—	12392	2082	1	0	192	0	0	logfile
✔	6MZJ	9303	2021-06-02	2018-11-05	4.8	5.06	—	4.4	0.014	1.51	0.0	0.08	8.06	0.00	2.352	0.86	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.008	1.01	0.0	0.06	8.60	0.01	2.129	12.80	0.00	15.8	84.1	0.1	-2.87	2.30	0.77	0.82	—	12653	2088	10	0	149	0	0	logfile
✔	7A95	11685	2021-06-03	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.48	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	4.4	0.003	0.63	0.0	0.04	8.96	0.00	2.160	9.50	0.00	3.8	96.1	0.1	-0.75	1.78	0.89	0.83	—	29887	3794	4	0	0	0	0	logfile

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