Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oLL	20116	2022-04-06	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.004	0.78	0.0	0.04	5.43	0.00	2.174	5.73	0.00	13.1	86.9	0.0	-2.32	2.07	0.74	0.68	—	10426	2114	6	0	0	0	0	logfile
✔	6oLM	20117	2022-04-06	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.66	0.0	0.04	5.44	0.00	2.217	8.78	0.00	6.2	93.8	0.0	-0.92	1.58	0.91	0.83	—	10602	2112	12	0	6	0	0	logfile
✔	4UQ8	2676	2022-04-07	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7BZY	30263	2022-04-04	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	5VLZ	8709	2022-04-08	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	7MJP	23881	2022-04-05	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	5.79	0.00	2.276	1.31	0.00	9.5	90.5	0.0	-0.73	0.44	0.57	0.70	—	14163	2818	10	0	8	0	0	logfile
✔	5N8Y	3602	2022-04-06	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	16.57	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.80	0.0	0.04	5.88	0.00	2.247	3.81	0.00	9.7	90.2	0.0	-2.16	3.82	0.74	0.79	—	23514	4752	24	0	0	0	0	logfile
✔	7JG6	22312	2022-04-06	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.003	0.91	0.0	0.00	5.94	0.00	2.230	1.09	0.00	10.6	89.3	0.1	-1.07	1.66	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	6oEF	20020	2022-04-09	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.198	8.14	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	7DZW	30915	2022-04-05	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.92	0.0	0.00	6.11	0.00	2.144	5.08	0.00	15.8	84.1	0.1	-2.69	2.06	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	6PWC	20505	2022-04-04	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.71	0.0	0.04	6.38	0.00	2.135	12.03	0.00	6.0	94.0	0.0	-0.57	2.41	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✔	6VE3	21153	2022-04-06	2019-12-28	4.3	4.68	4.39	4.4	0.005	1.17	2.0	0.07	5.96	0.01	2.179	22.46	0.00	3.4	96.3	0.3	-0.31	0.81	0.69	—	4.4	0.003	0.83	0.0	0.05	6.53	0.00	2.137	7.70	0.00	8.0	92.0	0.0	-2.25	1.88	0.81	0.81	—	22484	4578	14	0	0	0	0	logfile
✔	6LHV	0900	2022-04-05	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.009	1.36	0.0	0.05	6.54	0.00	2.055	51.70	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6LHW	0901	2022-04-05	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.037	44.10	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	7RFP	24444	2022-04-04	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.89	0.00	2.185	8.70	0.00	15.2	84.3	0.5	-4.03	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	7KPW	22990	2022-04-04	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	6MZJ	9303	2022-04-05	2018-11-05	4.8	5.06	—	4.4	0.014	1.50	0.0	0.08	8.01	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.004	0.77	0.0	0.05	7.02	0.00	2.212	5.11	0.00	7.1	92.9	0.1	-1.34	2.19	0.77	0.65	—	12653	2088	10	0	149	0	0	logfile
✔	6oR5	9032	2022-04-05	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.56	0.0	0.04	7.06	0.00	2.221	3.09	0.00	12.5	87.5	0.0	-0.20	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	7JG7	22313	2022-04-06	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.25	0.01	2.136	3.94	0.00	14.0	85.9	0.1	-2.12	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	7JG9	22315	2022-04-06	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.55	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	3.4	0.006	1.09	0.0	0.09	7.30	0.01	2.145	4.77	0.00	17.1	82.8	0.1	-2.40	1.34	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile

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