Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TK0	25948	2023-07-10	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.003	0.80	0.0	0.00	5.24	0.00	2.105	7.94	0.00	8.9	90.9	0.3	-0.45	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	8DXQ	27773	2023-07-05	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.004	0.64	0.0	0.04	5.26	0.00	2.238	1.07	0.00	12.2	87.7	0.0	0.18	0.28	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	6QPi	4614	2023-07-03	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	6SH5	10194	2023-07-06	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.004	0.82	0.0	0.04	5.28	0.00	2.265	5.49	0.00	16.4	83.6	0.0	-2.90	1.64	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	6ZD0	11172	2023-07-04	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	6CoZ	7545	2023-07-03	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6X64	22069	2023-07-08	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7JG8	22314	2023-07-09	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	2.2	0.003	0.83	0.0	0.08	5.44	0.00	2.294	0.43	0.00	8.9	91.0	0.1	-0.55	1.25	0.72	0.71	—	19573	4827	26	0	7	0	0	logfile
✔	8SRM	40735	2023-07-04	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.64	0.0	0.04	5.47	0.00	2.070	5.40	0.00	7.2	92.8	0.0	-0.25	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	4UQ8	2676	2023-07-13	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.47	0.00	2.110	23.19	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7WKK	32566	2023-07-16	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	3.8	0.005	0.74	0.0	0.04	5.51	0.00	2.124	3.84	0.00	9.6	90.4	0.0	-0.97	0.64	0.52	0.69	—	92821	18728	30	0	0	0	0	logfile
✔	7TKM	25974	2023-07-10	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.82	0.0	0.00	5.62	0.00	2.105	12.83	0.00	9.6	90.0	0.3	-0.78	1.55	0.82	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKP	25977	2023-07-10	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.67	0.00	2.069	13.64	0.00	9.3	90.5	0.2	-0.09	0.76	0.78	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	8P83	17540	2023-07-16	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile
✔	6YW7	10960	2023-07-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.01	0.0	0.02	5.70	0.00	2.420	14.13	0.00	13.2	86.6	0.2	-3.90	6.17	0.81	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	5N8Y	3602	2023-07-11	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	16.57	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.79	0.0	0.04	5.73	0.00	2.234	3.43	0.00	9.5	90.4	0.0	-1.95	3.82	0.74	0.79	—	23514	4752	24	0	0	0	0	logfile
✔	8i6Q	35203	2023-07-03	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	4.3	0.006	0.81	0.0	0.04	5.74	0.00	1.976	14.06	0.00	12.3	87.4	0.3	-1.52	0.96	0.69	0.83	—	3975	810	4	0	0	0	0	logfile
✔	7TKo	25976	2023-07-10	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.004	0.84	0.0	0.00	5.80	0.00	2.139	12.52	0.00	10.1	89.6	0.2	-0.46	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7JG6	22312	2023-07-09	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.90	0.0	0.00	5.83	0.00	2.226	1.17	0.00	11.4	88.6	0.0	-0.80	1.65	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7KPW	22990	2023-07-03	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile

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