Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2023-08-09	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7ZPK	14856	2023-08-18	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	13.25	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.1	0.004	0.67	0.0	0.04	15.75	0.01	1.886	22.41	0.38	4.9	95.1	0.0	0.42	2.37	0.86	0.73	-0.53	25935	1513	3	55	0	0	12760	logfile
✔	8ERL	28554	2023-08-10	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.78	0.0	0.04	15.62	0.00	2.101	21.34	0.27	9.5	90.5	0.0	-2.63	1.05	0.87	0.78	-0.50	6600	830	2	0	0	0	0	logfile
✔	8EFP	28087	2023-08-09	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.003	0.86	0.0	0.04	18.75	0.00	2.083	23.79	0.38	9.6	90.4	0.0	-2.53	0.88	0.84	0.73	-0.29	4705	594	2	0	0	0	0	logfile
✔	7N8N	24238	2023-08-12	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.74	0.0	0.04	28.70	0.01	2.032	25.58	0.31	6.5	93.3	0.3	-0.47	1.28	0.87	0.80	-0.27	11121	798	6	250	0	0	0	logfile
✔	7TTS	26122	2023-08-15	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.67	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.61	0.00	1.831	19.04	0.24	3.7	96.2	0.1	1.97	1.03	0.84	0.81	-0.20	18793	2686	12	0	23	0	0	logfile
✔	7ZNK	14804	2023-08-21	2022-04-21	3.9	6.01	—	7.4	0.006	0.88	2.0	0.05	11.83	0.01	1.707	9.96	5.83	6.4	93.3	0.3	-2.12	0.73	0.46	0.00	7.4	0.004	0.98	0.0	0.05	14.36	0.01	2.023	25.83	0.65	7.1	92.8	0.1	0.17	2.42	0.80	0.66	-0.17	88261	11599	32	6	0	0	0	logfile
✔	6C9K	7437	2023-08-24	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.77	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.58	0.0	0.04	14.68	0.00	2.172	14.08	0.15	1.7	98.3	0.0	3.68	0.87	0.81	0.66	-0.16	37632	4923	24	0	0	0	0	logfile
✔	6QYM	4679	2023-08-19	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	0.95	0.0	0.05	17.36	0.00	2.072	29.90	1.38	5.4	94.6	0.0	-0.66	2.36	0.69	0.67	-0.16	26880	3360	12	0	0	0	0	logfile
✔	7V66	31736	2023-08-22	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	5.1	0.004	0.76	0.0	0.04	15.44	0.00	2.197	20.43	1.35	4.9	95.1	0.0	2.55	1.19	0.16	0.14	-0.14	33216	4128	24	0	0	0	0	logfile
✔	8E55	27903	2023-08-12	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	6A7F	6993	2023-08-12	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.71	0.0	0.04	17.78	0.00	2.148	14.92	0.41	0.7	99.3	0.0	1.97	2.06	0.60	0.86	-0.08	10830	1410	30	0	0	0	0	logfile
✔	8BVT	16271	2023-08-09	2022-12-06	3.94	4.42	4.04	4.3	0.009	1.19	0.0	0.05	17.66	0.01	2.157	14.86	0.23	4.2	95.8	0.0	0.33	0.60	0.78	0.48	4.3	0.003	0.83	0.0	0.04	17.04	0.00	2.156	13.04	0.70	4.1	95.9	0.0	0.17	0.31	0.60	0.78	-0.07	4517	623	3	0	1	0	0	logfile
✔	8B3Q	15833	2023-08-18	2022-09-16	2.58	3.69	2.62	3.2	0.011	1.55	0.0	0.09	14.85	0.01	2.348	13.83	0.20	0.0	100.0	0.0	-1.09	0.83	0.94	3.67	3.3	0.003	0.57	0.0	0.03	17.28	0.00	2.211	5.54	2.39	0.2	99.8	0.0	6.19	2.57	0.78	0.88	-0.07	25095	3395	75	0	0	0	0	logfile
✔	7PQG	13593	2023-08-09	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.1	0.004	1.16	0.0	0.06	15.40	0.01	2.147	34.40	1.12	7.9	92.1	0.0	-1.28	0.74	0.56	0.77	-0.07	3251	423	2	0	0	0	0	logfile
✔	7RTT	24688	2023-08-09	2021-08-15	3.5	3.91	—	3.9	0.003	0.63	0.0	0.04	14.47	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.003	0.54	0.0	0.04	16.10	0.00	2.192	6.69	0.15	4.1	95.9	0.0	3.66	1.65	0.61	0.74	-0.06	6268	791	8	0	14	0	0	logfile
✔	8A1R	15084	2023-08-11	2022-06-01	3.6	5.63	3.62	3.4	0.014	1.35	0.0	0.05	15.14	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.77	1.0	0.05	16.10	0.00	2.170	19.32	0.41	5.9	94.1	0.0	-0.55	0.61	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7R4R	14315	2023-08-27	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.31	17.67	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.004	1.38	17.0	0.24	16.50	0.00	1.894	28.07	2.09	8.3	91.6	0.1	-2.33	1.31	0.68	0.60	-0.04	50505	3293	12	0	43	0	24171	logfile
✔	7VZF	32227	2023-08-09	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	7YG1	33804	2023-08-09	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.004	0.93	0.0	0.05	16.74	0.00	2.054	28.13	0.74	9.6	90.3	0.1	-2.02	1.47	0.68	0.69	0.01	6208	770	2	0	0	0	0	logfile

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