Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RJU	4906	2021-08-07	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2021-08-08	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.26	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.77	0.0	0.04	29.16	0.01	2.108	26.03	0.62	7.3	92.4	0.3	-0.61	0.86	0.88	0.80	-0.33	11121	798	6	250	0	0	0	logfile
✔	6QYM	4679	2021-08-09	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	0.96	0.0	0.05	17.72	0.01	2.069	26.41	0.89	4.9	95.1	0.0	-0.92	2.40	0.69	0.67	-0.23	26880	3360	12	0	0	0	0	logfile
✔	6W62	21551	2021-08-07	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	15.94	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.005	0.86	0.0	0.05	16.96	0.01	2.079	21.16	0.30	11.6	88.4	0.0	-2.17	1.26	0.72	0.69	-0.20	7387	910	2	24	0	0	0	logfile
✔	7oCK	12809	2021-08-10	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	35.23	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.0	0.007	1.00	0.0	0.05	16.93	0.01	1.525	35.37	0.17	5.5	94.4	0.1	-0.77	1.70	0.88	0.68	-0.13	28276	3666	12	0	0	0	0	logfile
✔	6F1Z	4172	2021-08-07	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	11.67	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.5	0.004	0.96	0.0	0.05	16.51	0.01	2.074	30.11	0.00	8.6	91.4	0.0	-1.36	1.85	0.67	0.77	-0.13	2138	265	4	0	0	0	0	logfile
✔	6KKR	0701	2021-08-07	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.69	0.0	0.04	12.81	0.00	2.153	10.40	2.27	3.4	96.6	0.0	0.87	1.66	0.12	0.11	-0.13	8416	1074	4	0	24	0	0	logfile
✔	7o3X	12711	2021-08-15	2021-04-03	3.9	4.85	4.22	6.5	0.017	1.96	0.0	0.11	18.05	0.01	0.321	15.44	1.39	1.6	97.8	0.6	2.94	0.58	0.46	-0.41	6.7	0.005	1.19	0.0	0.05	19.65	0.01	2.045	31.17	0.72	1.7	98.2	0.1	1.55	2.48	0.76	0.84	-0.07	148395	19290	105	0	15	0	0	logfile
✔	7M2Z	23638	2021-08-08	2021-03-17	3.7	5.69	4.14	4.3	0.007	0.90	0.0	0.05	14.28	0.01	2.006	17.16	0.00	7.7	92.2	0.0	-1.39	0.84	0.67	0.31	4.5	0.004	0.89	0.0	0.05	15.78	0.00	2.112	15.37	0.48	4.0	96.0	0.0	0.13	0.91	0.88	0.84	-0.07	18330	2253	6	2	0	0	0	logfile
✔	6K9F	9948	2021-08-08	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.19	0.0	0.05	17.63	0.00	2.023	25.68	0.42	1.3	98.7	0.0	-0.68	3.89	0.67	0.84	-0.06	8484	1044	12	0	0	0	0	logfile
✔	7BW8	30230	2021-08-07	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	48.38	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.14	0.01	2.215	16.01	0.74	10.3	89.7	0.0	-3.02	1.61	0.68	0.63	-0.06	6021	737	3	0	0	0	0	logfile
✔	6A7F	6993	2021-08-08	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.70	0.0	0.04	18.00	0.00	2.155	15.91	0.57	1.0	99.0	0.0	2.02	2.07	0.60	0.86	-0.06	10830	1410	30	0	0	0	0	logfile
✔	6TUP	10593	2021-08-09	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.032	2.22	0.0	0.21	26.94	0.01	1.011	99.23	1.25	2.0	98.0	0.0	-1.97	9.62	0.56	0.59	-0.04	22400	2300	100	300	0	0	0	logfile
✔	6C9K	7437	2021-08-11	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.60	0.0	0.04	14.67	0.00	2.163	15.69	0.28	1.9	98.1	0.0	3.50	0.95	0.81	0.67	-0.02	37632	4923	24	0	0	0	0	logfile
✔	6FLQ	4275	2021-08-10	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	0.94	1.0	0.04	16.93	0.01	2.051	14.94	0.62	8.5	91.4	0.1	-1.49	2.13	0.25	0.20	-0.02	30201	3868	10	91	3	0	0	logfile
✔	5VA2	8651	2021-08-08	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.07	1.08	7.7	90.7	1.6	-3.86	0.64	0.73	-0.32	4.3	0.004	0.94	0.0	0.05	16.06	0.00	2.119	22.30	0.27	4.7	94.8	0.5	-1.05	2.67	0.67	0.83	0.00	17576	2232	4	0	0	0	0	logfile
✔	6oiG	20077	2021-08-10	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.41	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	0.92	2.0	0.05	18.05	0.01	1.456	22.61	0.69	10.7	89.1	0.1	-2.34	2.33	0.89	0.85	0.02	129140	6757	48	3522	116	0	0	logfile
✔	6iP1	9697	2021-08-08	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.003	0.91	0.0	0.04	18.50	0.00	2.156	17.08	0.85	7.7	92.3	0.0	-0.36	1.31	0.61	0.75	0.05	11245	1420	8	0	0	0	0	logfile
✔	6D9J	7836	2021-08-21	2018-04-30	3.2	9.32	4.90	4.8	0.003	0.79	0.0	0.05	15.21	0.01	0.444	5.63	0.03	4.7	95.3	0.0	-4.02	0.93	0.80	0.18	4.8	0.003	0.65	0.0	0.03	18.14	0.00	1.971	25.66	0.28	6.2	93.8	0.0	-1.32	1.97	0.94	0.86	0.05	227188	12745	90	5838	6	0	0	logfile
✔	6UMM	20820	2021-08-09	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.69	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.003	0.92	0.0	0.05	14.40	0.00	2.075	21.12	0.17	3.8	96.2	0.0	0.87	1.25	0.62	0.82	0.06	23658	3184	10	0	0	0	0	logfile

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