Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2023-02-16	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7ZPK	14856	2023-02-25	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	13.25	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.1	0.004	0.67	0.0	0.04	15.75	0.01	1.886	22.41	0.38	4.9	95.1	0.0	0.42	2.37	0.86	0.73	-0.53	25935	1513	3	55	0	0	12760	logfile
✔	7N8N	24238	2023-02-20	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.74	0.0	0.04	28.70	0.01	2.032	25.58	0.31	6.5	93.3	0.3	-0.47	1.28	0.87	0.80	-0.27	11121	798	6	250	0	0	0	logfile
✔	7TTS	26122	2023-02-22	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.67	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.61	0.00	1.831	19.04	0.24	3.7	96.2	0.1	1.97	1.03	0.84	0.81	-0.20	18793	2686	12	0	23	0	0	logfile
✔	6QYM	4679	2023-02-25	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	0.95	0.0	0.05	17.36	0.00	2.072	29.86	1.38	5.4	94.6	0.0	-0.66	2.36	0.69	0.67	-0.16	26880	3360	12	0	0	0	0	logfile
✔	8E55	27903	2023-02-20	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	6A7F	6993	2023-02-19	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.71	0.0	0.04	17.78	0.00	2.148	14.92	0.41	0.7	99.3	0.0	1.97	2.06	0.60	0.86	-0.08	10830	1410	30	0	0	0	0	logfile
✔	7RTV	24690	2023-02-17	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.88	0.0	0.04	18.40	0.00	2.174	15.94	0.97	3.0	97.0	0.0	2.97	1.77	0.41	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7PQG	13593	2023-02-17	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.21	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.1	0.004	1.16	0.0	0.06	15.40	0.01	2.147	34.40	1.12	7.9	92.1	0.0	-1.28	0.74	0.56	0.77	-0.07	3251	423	2	0	0	0	0	logfile
✔	6CXC	7774	2023-02-21	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.003	0.80	0.0	0.05	16.00	0.00	2.124	20.73	0.34	5.3	94.7	0.0	-2.08	2.14	0.73	0.76	-0.05	15196	1945	18	0	6	0	0	logfile
✔	6M71	11007	2023-02-18	2020-03-16	2.9	3.22	3.22	51.0	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.04	0.02	0.33	3.1	0.004	0.73	0.0	0.04	15.84	0.00	2.163	13.70	3.17	5.0	95.0	0.0	-0.20	1.62	0.06	0.05	-0.05	8614	1085	4	0	0	0	0	logfile
✔	6UZZ	33318	2023-02-21	2019-11-16	3.1	3.28	3.51	36.0	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.02	0.00	0.27	3.1	0.003	0.66	0.0	0.04	14.00	0.00	2.048	10.48	0.12	3.1	96.9	0.0	1.34	2.50	0.07	0.13	-0.03	15832	1984	12	0	8	0	0	logfile
✔	7VZF	32227	2023-02-16	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	7YG1	33804	2023-02-17	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.004	0.93	0.0	0.05	16.74	0.00	2.054	28.13	0.74	9.6	90.3	0.1	-2.02	1.47	0.68	0.69	0.01	6208	770	2	0	0	0	0	logfile
✔	6CAJ	23209	2023-02-25	2018-01-31	2.8	3.42	—	70.0	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.12	0.02	-0.04	2.9	0.003	0.73	0.0	0.04	14.60	0.01	2.063	15.80	3.90	5.9	94.1	0.0	-1.06	1.40	0.15	0.14	0.02	24295	3210	11	0	1	0	0	logfile
✔	5VA2	8651	2023-02-22	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.004	0.98	0.0	0.05	16.04	0.00	2.082	26.45	0.70	5.3	94.3	0.4	-1.34	2.67	0.67	0.83	0.03	17576	2232	4	0	0	0	0	logfile
✔	6PMJ	20395	2023-02-22	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.71	0.0	0.04	17.51	0.00	1.817	21.36	0.34	8.4	91.4	0.1	-2.26	1.66	0.89	0.77	0.03	57984	3453	10	110	4	0	28609	logfile
✔	7oCK	12809	2023-02-26	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.005	0.92	0.0	0.05	16.96	0.01	2.008	39.34	0.37	7.5	92.4	0.1	-1.36	1.42	0.87	0.65	0.03	28276	3666	12	0	0	0	0	logfile
✔	7SC1	26879	2023-02-27	2021-09-26	3.2	3.82	3.39	20.0	0.006	0.60	0.0	0.05	14.85	0.00	2.169	10.07	0.06	4.0	96.0	0.0	-0.55	0.14	0.01	-0.05	3.3	0.003	0.66	0.0	0.05	16.70	0.00	2.082	13.14	0.37	3.8	96.2	0.0	-0.67	0.87	0.20	0.14	0.03	29415	3705	12	0	45	0	0	logfile
✔	7MF3	23810	2023-02-24	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.34	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.72	0.0	0.04	17.39	0.00	1.957	17.25	0.24	7.0	93.0	0.0	-0.87	1.45	0.91	0.74	0.04	22938	2822	12	0	8	0	0	logfile

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