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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FU8 | 4319 | 2022-04-04 | 2018-02-26 | 3.2 | 4.43 | 2.97 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.003 | 0.82 | 0.0 | 0.04 | 14.91 | 0.00 | 2.261 | 15.40 | 0.00 | 10.0 | 88.8 | 1.2 | -1.84 | 3.11 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 6RJU | 4906 | 2022-04-04 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7N8N | 24238 | 2022-04-05 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 28.11 | 0.01 | 2.035 | 27.61 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.005 | 0.76 | 0.0 | 0.04 | 28.92 | 0.01 | 2.088 | 25.93 | 0.93 | 8.1 | 91.6 | 0.3 | -0.94 | 0.74 | 0.88 | 0.81 | -0.33 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 7M2Z | 23638 | 2022-04-06 | 2021-03-17 | 3.7 | 5.69 | 4.14 | 4.3 | 0.007 | 0.90 | 0.0 | 0.05 | 14.28 | 0.01 | 2.006 | 17.54 | 0.00 | 7.7 | 92.2 | 0.0 | -1.39 | 0.84 | 0.67 | 0.31 | 4.5 | 0.004 | 0.89 | 0.0 | 0.05 | 15.91 | 0.00 | 2.088 | 20.12 | 0.63 | 5.1 | 94.9 | 0.0 | -0.15 | 0.86 | 0.89 | 0.85 | -0.27 | 18330 | 2253 | 6 | 2 | 0 | 0 | 0 | logfile |
✔ | 6QYM | 4679 | 2022-04-07 | 2019-03-09 | 3.6 | 3.25 | — | 4.0 | 0.007 | 0.89 | 0.0 | 0.05 | 9.66 | 0.01 | 2.201 | 8.77 | 0.00 | 6.5 | 93.5 | 0.0 | -4.63 | 0.62 | 0.60 | 0.02 | 3.5 | 0.006 | 1.00 | 0.0 | 0.05 | 17.55 | 0.01 | 2.058 | 32.49 | 1.38 | 5.9 | 94.1 | 0.0 | -1.09 | 1.93 | 0.69 | 0.68 | -0.22 | 26880 | 3360 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C9K | 7437 | 2022-04-08 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 0.77 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.84 | 0.00 | 2.148 | 18.22 | 0.15 | 2.1 | 97.9 | 0.0 | 3.14 | 0.89 | 0.81 | 0.67 | -0.17 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2022-04-05 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.02 | 0.0 | 0.06 | 10.95 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.004 | 0.82 | 0.0 | 0.05 | 16.06 | 0.01 | 2.124 | 22.31 | 0.57 | 6.5 | 93.5 | 0.0 | -2.33 | 2.15 | 0.73 | 0.77 | -0.17 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NCi | 12267 | 2022-04-05 | 2021-01-28 | 3.55 | 3.67 | 3.44 | 4.0 | 0.012 | 1.57 | 2.0 | 0.10 | 15.57 | 0.01 | 2.481 | 0.35 | 0.00 | 8.9 | 91.1 | 0.0 | -3.74 | 0.68 | 0.59 | 1.81 | 4.0 | 0.003 | 0.59 | 2.0 | 0.05 | 14.74 | 0.00 | 1.986 | 16.42 | 0.37 | 11.1 | 88.9 | 0.0 | -4.08 | 1.11 | 0.64 | 0.57 | -0.11 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 7o3X | 12711 | 2022-04-12 | 2021-04-03 | 3.9 | 4.85 | 4.22 | 6.5 | 0.017 | 1.96 | 0.0 | 0.11 | 18.05 | 0.01 | 0.321 | 15.91 | 1.39 | 1.6 | 97.8 | 0.6 | 2.94 | 0.58 | 0.46 | -0.41 | 4.3 | 0.005 | 1.17 | 1.0 | 0.05 | 19.81 | 0.01 | 2.020 | 36.07 | 0.90 | 2.1 | 97.7 | 0.1 | 1.33 | 2.43 | 0.77 | 0.85 | -0.11 | 148395 | 19290 | 105 | 0 | 15 | 0 | 0 | logfile |
✔ | 6TUP | 10593 | 2022-04-06 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.6 | 0.039 | 2.56 | 0.0 | 0.24 | 27.07 | 0.01 | 1.098 | 116.88 | 1.25 | 3.2 | 96.8 | 0.0 | -2.76 | 8.49 | 0.55 | 0.60 | -0.09 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 6F1Z | 4172 | 2022-04-04 | 2017-11-23 | 3.4 | 4.16 | — | 3.4 | 0.004 | 0.97 | 0.0 | 0.06 | 11.17 | 0.01 | 2.264 | 12.14 | 0.81 | 8.6 | 91.4 | 0.0 | -4.21 | 0.64 | 0.68 | -1.41 | 3.4 | 0.004 | 1.01 | 0.0 | 0.05 | 16.44 | 0.01 | 2.105 | 24.74 | 0.81 | 7.8 | 92.2 | 0.0 | -1.37 | 1.33 | 0.66 | 0.75 | -0.09 | 2138 | 265 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iP1 | 9697 | 2022-04-05 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 7.91 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.95 | 0.0 | 0.04 | 18.38 | 0.00 | 2.200 | 16.09 | 1.02 | 7.3 | 92.7 | 0.0 | -0.36 | 1.25 | 0.60 | 0.75 | -0.05 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QG8 | 13952 | 2022-04-12 | 2021-12-07 | 3.97 | 7.71 | — | 4.0 | 0.016 | 1.62 | 61.0 | 0.11 | 15.09 | 0.01 | 0.770 | 4.86 | 1.61 | 8.6 | 90.4 | 1.0 | -3.97 | 0.64 | 0.40 | 0.16 | 4.0 | 0.005 | 0.77 | 1.0 | 0.04 | 17.93 | 0.01 | 1.927 | 35.89 | 0.58 | 9.5 | 90.4 | 0.1 | -2.27 | 3.78 | 0.84 | 0.76 | -0.02 | 147108 | 5936 | 58 | 4695 | 3 | 9 | 0 | logfile |
✔ | 5VA1 | 8650 | 2022-04-06 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.003 | 0.86 | 0.0 | 0.05 | 15.41 | 0.00 | 2.184 | 19.30 | 0.38 | 2.0 | 98.0 | 0.0 | 0.18 | 2.74 | 0.66 | 0.83 | 0.01 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B6X | 12057 | 2022-04-05 | 2020-12-08 | 3.6 | 2.59 | — | 2.5 | 0.008 | 1.06 | 0.0 | 0.06 | 14.17 | 0.01 | 2.035 | 44.31 | 0.09 | 13.3 | 86.7 | 0.0 | -2.77 | 0.75 | 0.72 | 0.42 | 2.5 | 0.005 | 0.82 | 0.0 | 0.05 | 16.16 | 0.01 | 2.100 | 26.07 | 0.60 | 7.7 | 92.2 | 0.1 | -1.11 | 1.37 | 0.75 | 0.71 | 0.02 | 10470 | 1290 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D9J | 7836 | 2022-04-24 | 2018-04-30 | 3.2 | 9.32 | 4.90 | 4.8 | 0.003 | 0.79 | 0.0 | 0.05 | 15.21 | 0.01 | 0.444 | 5.63 | 0.03 | 4.7 | 95.3 | 0.0 | -4.02 | 0.93 | 0.80 | 0.18 | 4.8 | 0.004 | 0.73 | 1.0 | 0.04 | 18.69 | 0.01 | 1.886 | 34.50 | 0.16 | 7.7 | 92.3 | 0.0 | -1.84 | 2.21 | 0.90 | 0.77 | 0.03 | 227188 | 12745 | 90 | 5838 | 6 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2022-04-05 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 17.88 | 0.00 | 2.141 | 15.46 | 0.41 | 0.7 | 99.3 | 0.0 | 2.04 | 2.05 | 0.60 | 0.87 | 0.03 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oCK | 12809 | 2022-04-07 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 35.98 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.008 | 1.16 | 0.0 | 0.05 | 16.93 | 0.01 | 1.998 | 42.46 | 0.47 | 6.0 | 93.8 | 0.1 | -1.34 | 1.33 | 0.86 | 0.62 | 0.03 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VQU | 21357 | 2022-04-06 | 2020-02-05 | 3.88 | 4.99 | 3.94 | 4.1 | 0.007 | 0.94 | 0.0 | 0.06 | 14.62 | 0.01 | 2.276 | 5.09 | 1.70 | 3.4 | 96.6 | 0.0 | -2.26 | 0.73 | 0.86 | 0.46 | 4.1 | 0.004 | 0.76 | 0.0 | 0.04 | 14.93 | 0.00 | 2.146 | 14.46 | 0.21 | 2.4 | 97.6 | 0.0 | 1.83 | 1.06 | 0.73 | 0.88 | 0.06 | 9156 | 1178 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2022-04-13 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 12.42 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.009 | 1.22 | 4.0 | 0.05 | 18.03 | 0.01 | 1.651 | 53.00 | 0.21 | 10.9 | 88.4 | 0.7 | -2.75 | 2.46 | 0.66 | 0.41 | 0.07 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |