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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FU8 | 4319 | 2023-08-09 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7ZPK | 14856 | 2023-08-18 | 2022-04-27 | 3.81 | 7.29 | 3.88 | 5.6 | 0.004 | 0.81 | 0.0 | 0.05 | 13.25 | 0.02 | 2.214 | 2.12 | 0.68 | 2.8 | 97.2 | 0.0 | 0.04 | 0.81 | 0.55 | -0.44 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.75 | 0.01 | 1.886 | 22.41 | 0.38 | 4.9 | 95.1 | 0.0 | 0.42 | 2.37 | 0.86 | 0.73 | -0.53 | 25935 | 1513 | 3 | 55 | 0 | 0 | 12760 | logfile |
✔ | 8ERL | 28554 | 2023-08-10 | 2022-10-12 | 3.9 | 4.58 | 3.40 | 4.1 | 0.005 | 1.28 | 0.0 | 0.07 | 15.42 | 0.01 | 2.296 | 4.84 | 0.27 | 9.5 | 90.5 | 0.0 | -3.82 | 0.86 | 0.76 | -0.02 | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 15.62 | 0.00 | 2.101 | 21.34 | 0.27 | 9.5 | 90.5 | 0.0 | -2.63 | 1.05 | 0.87 | 0.78 | -0.50 | 6600 | 830 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2023-08-09 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 18.75 | 0.00 | 2.083 | 23.79 | 0.38 | 9.6 | 90.4 | 0.0 | -2.53 | 0.88 | 0.84 | 0.73 | -0.29 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N8N | 24238 | 2023-08-12 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 28.11 | 0.01 | 2.035 | 27.61 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.005 | 0.74 | 0.0 | 0.04 | 28.70 | 0.01 | 2.032 | 25.58 | 0.31 | 6.5 | 93.3 | 0.3 | -0.47 | 1.28 | 0.87 | 0.80 | -0.27 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 7TTS | 26122 | 2023-08-15 | 2022-02-01 | 2.9 | 12.34 | — | — | 0.008 | 0.99 | 1.0 | 0.08 | 12.67 | 0.01 | 1.788 | 5.64 | 0.30 | 3.2 | 96.6 | 0.1 | 1.89 | 0.77 | 0.55 | -0.20 | — | 0.003 | 0.60 | 0.0 | 0.04 | 13.61 | 0.00 | 1.831 | 19.04 | 0.24 | 3.7 | 96.2 | 0.1 | 1.97 | 1.03 | 0.84 | 0.81 | -0.20 | 18793 | 2686 | 12 | 0 | 23 | 0 | 0 | logfile |
✔ | 7ZNK | 14804 | 2023-08-21 | 2022-04-21 | 3.9 | 6.01 | — | 7.4 | 0.006 | 0.88 | 2.0 | 0.05 | 11.83 | 0.01 | 1.707 | 9.96 | 5.83 | 6.4 | 93.3 | 0.3 | -2.12 | 0.73 | 0.46 | 0.00 | 7.4 | 0.004 | 0.98 | 0.0 | 0.05 | 14.36 | 0.01 | 2.023 | 25.83 | 0.65 | 7.1 | 92.8 | 0.1 | 0.17 | 2.42 | 0.80 | 0.66 | -0.17 | 88261 | 11599 | 32 | 6 | 0 | 0 | 0 | logfile |
✔ | 6C9K | 7437 | 2023-08-24 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 0.77 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.003 | 0.58 | 0.0 | 0.04 | 14.68 | 0.00 | 2.172 | 14.08 | 0.15 | 1.7 | 98.3 | 0.0 | 3.68 | 0.87 | 0.81 | 0.66 | -0.16 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QYM | 4679 | 2023-08-19 | 2019-03-09 | 3.6 | 3.25 | — | 4.0 | 0.007 | 0.89 | 0.0 | 0.05 | 9.66 | 0.01 | 2.201 | 8.77 | 0.00 | 6.5 | 93.5 | 0.0 | -4.63 | 0.62 | 0.60 | 0.02 | 3.5 | 0.005 | 0.95 | 0.0 | 0.05 | 17.36 | 0.00 | 2.072 | 29.90 | 1.38 | 5.4 | 94.6 | 0.0 | -0.66 | 2.36 | 0.69 | 0.67 | -0.16 | 26880 | 3360 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V66 | 31736 | 2023-08-22 | 2021-08-19 | 1.89 | 1.85 | — | 5.2 | 0.006 | 1.02 | 0.0 | 0.07 | 12.14 | 0.01 | 1.929 | 1.89 | 2.07 | 1.9 | 98.0 | 0.0 | 1.97 | 0.09 | 0.05 | 1.38 | 5.1 | 0.004 | 0.76 | 0.0 | 0.04 | 15.44 | 0.00 | 2.197 | 20.43 | 1.35 | 4.9 | 95.1 | 0.0 | 2.55 | 1.19 | 0.16 | 0.14 | -0.14 | 33216 | 4128 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-08-12 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✔ | 6A7F | 6993 | 2023-08-12 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BVT | 16271 | 2023-08-09 | 2022-12-06 | 3.94 | 4.42 | 4.04 | 4.3 | 0.009 | 1.19 | 0.0 | 0.05 | 17.66 | 0.01 | 2.157 | 14.86 | 0.23 | 4.2 | 95.8 | 0.0 | 0.33 | 0.60 | 0.78 | 0.48 | 4.3 | 0.003 | 0.83 | 0.0 | 0.04 | 17.04 | 0.00 | 2.156 | 13.04 | 0.70 | 4.1 | 95.9 | 0.0 | 0.17 | 0.31 | 0.60 | 0.78 | -0.07 | 4517 | 623 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8B3Q | 15833 | 2023-08-18 | 2022-09-16 | 2.58 | 3.69 | 2.62 | 3.2 | 0.011 | 1.55 | 0.0 | 0.09 | 14.85 | 0.01 | 2.348 | 13.83 | 0.20 | 0.0 | 100.0 | 0.0 | -1.09 | 0.83 | 0.94 | 3.67 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 17.28 | 0.00 | 2.211 | 5.54 | 2.39 | 0.2 | 99.8 | 0.0 | 6.19 | 2.57 | 0.78 | 0.88 | -0.07 | 25095 | 3395 | 75 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PQG | 13593 | 2023-08-09 | 2021-09-21 | 3.7 | 4.20 | — | 4.0 | 0.004 | 0.88 | 0.0 | 0.05 | 12.56 | 0.01 | 2.204 | 28.36 | 0.28 | 7.4 | 92.6 | 0.0 | -0.87 | 0.56 | 0.76 | 0.82 | 4.1 | 0.004 | 1.16 | 0.0 | 0.06 | 15.40 | 0.01 | 2.147 | 34.40 | 1.12 | 7.9 | 92.1 | 0.0 | -1.28 | 0.74 | 0.56 | 0.77 | -0.07 | 3251 | 423 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTT | 24688 | 2023-08-09 | 2021-08-15 | 3.5 | 3.91 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 14.47 | 0.00 | 2.239 | 5.02 | 0.00 | 3.6 | 96.4 | 0.0 | 2.65 | 0.60 | 0.73 | 1.03 | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 16.10 | 0.00 | 2.192 | 6.69 | 0.15 | 4.1 | 95.9 | 0.0 | 3.66 | 1.65 | 0.61 | 0.74 | -0.06 | 6268 | 791 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 8A1R | 15084 | 2023-08-11 | 2022-06-01 | 3.6 | 5.63 | 3.62 | 3.4 | 0.014 | 1.35 | 0.0 | 0.05 | 15.14 | 0.00 | 2.097 | 11.72 | 0.00 | 5.2 | 94.8 | 0.0 | -0.06 | 0.91 | 0.75 | -0.28 | 3.5 | 0.003 | 0.77 | 1.0 | 0.05 | 16.10 | 0.00 | 2.170 | 19.32 | 0.41 | 5.9 | 94.1 | 0.0 | -0.55 | 0.61 | 0.95 | 0.86 | -0.05 | 9286 | 1186 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7R4R | 14315 | 2023-08-27 | 2022-02-09 | 3.9 | 4.20 | — | 6.8 | 0.036 | 4.11 | 135.0 | 0.31 | 17.67 | 0.03 | 1.228 | 59.98 | 7.44 | 8.5 | 91.3 | 0.2 | -3.20 | 0.62 | 0.41 | -0.13 | 5.8 | 0.004 | 1.38 | 17.0 | 0.24 | 16.50 | 0.00 | 1.894 | 28.07 | 2.09 | 8.3 | 91.6 | 0.1 | -2.33 | 1.31 | 0.68 | 0.60 | -0.04 | 50505 | 3293 | 12 | 0 | 43 | 0 | 24171 | logfile |
✔ | 7VZF | 32227 | 2023-08-09 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.005 | 0.93 | 0.0 | 0.05 | 18.70 | 0.00 | 2.192 | 14.23 | 5.32 | 20.2 | 79.8 | 0.0 | -4.30 | 1.92 | 0.37 | 0.63 | -0.01 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YG1 | 33804 | 2023-08-09 | 2022-07-09 | 3.77 | 4.01 | 3.78 | 3.9 | 0.005 | 1.15 | 1.0 | 0.06 | 14.00 | 0.01 | 2.230 | 42.79 | 1.33 | 14.0 | 86.0 | 0.0 | -3.77 | 0.65 | 0.65 | 0.57 | 3.9 | 0.004 | 0.93 | 0.0 | 0.05 | 16.74 | 0.00 | 2.054 | 28.13 | 0.74 | 9.6 | 90.3 | 0.1 | -2.02 | 1.47 | 0.68 | 0.69 | 0.01 | 6208 | 770 | 2 | 0 | 0 | 0 | 0 | logfile |