Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Xi8	22191	2021-09-02	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.38	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.009	1.35	0.0	0.05	17.52	0.01	2.145	20.27	0.97	8.5	91.5	0.0	-2.30	1.29	0.69	0.64	0.08	5022	636	4	0	2	0	0	logfile
✔	6Z3A	11055	2021-09-06	2020-05-19	3.8	4.08	—	3.8	0.007	1.23	2.0	0.06	12.44	0.01	1.678	10.95	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.005	0.98	0.0	0.05	15.72	0.01	2.000	25.05	0.57	9.0	91.0	0.0	-1.90	1.47	0.79	0.75	0.09	46142	5730	6	0	4	0	0	logfile
✔	6PMJ	20395	2021-09-03	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	10.86	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.004	0.74	0.0	0.04	17.77	0.00	1.847	25.76	0.78	10.4	89.5	0.1	-2.24	1.78	0.89	0.78	0.09	57984	3453	10	110	4	0	28609	logfile
✔	6GEN	4396	2021-09-06	2018-04-27	3.6	4.67	—	4.5	0.003	0.75	0.0	0.04	20.46	0.01	2.109	5.88	8.77	3.9	96.0	0.0	-4.51	0.78	0.59	-0.18	4.5	0.004	0.78	0.0	0.04	21.28	0.00	1.014	18.12	0.58	5.0	95.0	0.0	-0.45	1.47	0.84	0.74	0.09	44481	4683	29	346	151	0	0	logfile
✔	6MDo	9102	2021-09-06	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.12	13.30	0.01	2.012	6.67	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.004	0.67	0.0	0.08	13.86	0.00	1.940	17.65	0.33	6.6	93.4	0.0	-1.05	1.59	0.87	0.84	0.12	45373	2843	13	0	11	0	22858	logfile
✔	5VA1	8650	2021-09-03	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	7.81	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.003	0.85	0.0	0.05	15.60	0.00	2.098	20.92	0.38	2.2	97.8	0.0	0.26	2.76	0.66	0.84	0.13	17628	2240	4	0	0	0	0	logfile
✔	6CXC	7774	2021-09-03	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.005	0.88	0.0	0.05	16.12	0.01	2.040	27.12	0.80	9.0	91.0	0.0	-2.39	2.18	0.71	0.73	0.13	15196	1945	18	0	6	0	0	logfile
✔	3JCE	6550	2021-09-12	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.1	0.008	1.08	1.0	0.05	18.29	0.01	1.688	45.38	0.30	11.8	87.0	1.1	-3.25	1.56	0.67	0.36	0.15	154017	6546	59	4797	3	0	0	logfile
✔	6H5i	0140	2021-09-02	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.006	0.80	1.0	0.04	15.06	0.00	1.596	14.27	0.08	3.1	96.9	0.0	1.89	1.30	0.37	0.24	0.15	43900	5392	26	0	0	0	0	logfile
✔	6K9F	9948	2021-09-03	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.17	0.0	0.05	17.64	0.00	2.051	25.98	0.74	1.3	98.7	0.0	-0.82	3.90	0.68	0.84	0.15	8484	1044	12	0	0	0	0	logfile
✔	5KPX	8282	2021-09-12	2016-07-05	3.9	5.30	4.08	3.8	0.008	1.18	6.0	0.09	14.40	0.01	2.087	29.47	0.58	13.2	80.2	6.6	-4.56	0.90	0.77	0.50	4.0	0.004	0.73	1.0	0.03	16.33	0.00	2.056	26.80	0.79	9.9	89.1	1.0	-1.93	1.11	0.94	0.90	0.16	154603	6623	59	4812	0	0	0	logfile
✔	5ZEP	6921	2021-09-11	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.05	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	4.5	0.006	0.78	1.0	0.04	17.86	0.01	1.523	33.24	0.83	7.7	92.1	0.2	-1.37	1.72	0.90	0.87	0.16	152451	6193	58	4802	262	0	0	logfile
✔	6EK0	3883	2021-09-12	2017-09-24	2.9	3.27	—	40.0	0.012	1.13	0.0	0.06	16.18	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.004	0.83	2.0	0.03	17.28	0.01	1.254	15.49	2.44	8.1	91.9	0.0	-2.27	1.74	0.11	0.15	0.16	219596	11719	128	5861	415	61	0	logfile
✔	5LKH	4068	2021-09-06	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.004	0.82	0.0	0.04	15.63	0.01	2.059	26.51	0.27	6.4	93.5	0.0	-0.75	2.44	0.40	0.25	0.18	37345	4740	5	0	0	0	0	logfile
✔	5GAK	3227	2021-09-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.007	1.04	4.0	0.05	19.52	0.01	1.924	28.53	0.38	9.9	89.8	0.4	-2.67	1.87	0.33	0.24	0.21	128975	6434	50	3597	234	0	0	logfile
✔	7DPA	30802	2021-09-05	2020-12-18	3.8	4.83	3.79	3.0	0.006	0.85	0.0	0.05	15.30	0.01	2.038	21.88	0.00	12.3	87.7	0.0	-3.05	0.70	0.39	0.50	3.0	0.004	0.81	0.0	0.04	16.90	0.00	1.939	27.16	0.38	8.7	91.3	0.0	-1.67	1.23	0.89	0.76	0.22	32858	4034	6	0	0	0	0	logfile
✔	3JCD	6549	2021-09-09	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.012	1.73	4.0	0.08	22.58	0.01	1.060	92.69	0.27	19.3	79.2	1.5	-4.64	3.41	0.76	0.52	0.22	147815	5982	57	4715	0	0	0	logfile
✔	6XSS	22305	2021-09-02	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.15	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.016	1.55	0.0	0.04	17.50	0.01	2.308	17.36	0.24	1.0	99.0	0.0	2.38	1.34	0.75	0.79	0.22	8048	1040	4	0	0	0	0	logfile
✔	6oUo	20204	2021-09-09	2019-05-05	3.7	4.99	—	3.3	0.007	0.83	1.0	0.04	15.93	0.02	1.584	12.03	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.004	0.75	0.0	0.03	17.07	0.01	1.903	34.49	0.79	6.3	93.7	0.0	-1.47	3.93	0.92	0.84	0.22	146867	6028	61	4642	14	0	0	logfile
✔	7CR7	30448	2021-09-03	2020-08-12	3.7	3.92	—	3.8	0.008	0.79	0.0	0.04	14.07	0.00	1.825	91.45	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.89	0.0	0.04	17.25	0.00	2.079	17.95	0.30	3.7	96.3	0.0	0.24	1.88	0.63	0.70	0.23	16136	1988	12	0	4	0	0	logfile

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