Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MDo	9102	2021-04-04	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.11	13.31	0.01	2.012	6.67	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.003	0.64	0.0	0.08	12.58	0.00	1.954	14.66	0.00	6.4	93.6	0.0	-0.70	1.63	0.87	0.84	0.16	45373	2843	13	0	11	0	22858	logfile
✔	5ZEP	6921	2021-04-05	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.05	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	4.5	0.003	0.65	0.0	0.03	16.86	0.01	1.982	23.91	0.00	7.5	92.3	0.2	-1.27	3.10	0.90	0.86	0.17	152451	6193	58	4802	262	0	0	logfile
✔	6QYM	4679	2021-04-03	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	0.92	0.0	0.05	13.53	0.00	1.997	26.11	0.00	6.3	93.7	0.0	-1.11	2.39	0.69	0.68	0.18	26880	3360	12	0	0	0	0	logfile
✔	6RED	4850	2021-04-04	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.05	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	28.0	0.005	0.83	0.0	0.04	13.22	0.01	2.011	16.34	0.03	4.4	95.5	0.1	-0.63	1.94	0.24	0.15	0.19	33899	4503	25	0	10	0	0	logfile
✔	5LKH	4068	2021-04-04	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.004	0.79	0.0	0.04	13.68	0.00	2.112	26.91	0.02	7.0	92.9	0.0	-1.11	2.56	0.40	0.27	0.20	37345	4740	5	0	0	0	0	logfile
✔	6LBo	0870	2021-04-23	2019-11-14	3.18	3.32	—	38.0	0.012	1.05	0.0	0.07	14.32	0.01	0.262	60.54	0.49	5.6	94.3	0.1	-2.10	0.19	0.02	-0.07	3.2	0.004	0.82	0.0	0.05	13.87	0.01	2.017	19.38	0.03	8.0	92.0	0.0	-2.35	1.64	0.30	0.22	0.20	329705	42029	183	0	0	0	0	logfile
✔	6F1Y	4171	2021-04-01	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.25	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.5	0.004	0.79	0.0	0.04	13.31	0.00	2.165	14.13	0.00	10.2	89.8	0.0	-0.91	2.20	0.50	0.75	0.21	4316	472	2	0	111	0	0	logfile
✔	6FLQ	4275	2021-04-03	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.7	0.003	0.80	0.0	0.04	15.22	0.01	2.017	14.84	0.00	8.9	91.1	0.1	-1.89	2.31	0.26	0.22	0.22	30201	3868	10	91	3	0	0	logfile
✔	6TQM	10555	2021-04-04	2019-12-16	3.8	4.34	3.78	20.0	0.013	0.92	0.0	0.12	14.97	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.72	0.0	0.04	13.70	0.00	1.948	12.65	0.00	8.2	91.8	0.0	-3.50	1.53	0.38	0.24	0.22	39616	2578	6	0	4	0	19804	logfile
✔	6iLo	9689	2021-04-22	2018-10-19	3.2	3.31	—	20.0	0.008	1.03	60.0	0.06	10.45	0.01	0.510	60.79	0.00	7.8	92.2	0.0	-4.23	0.16	0.02	0.06	3.2	0.004	0.83	1.0	0.05	12.00	0.01	1.961	21.59	0.01	8.7	91.3	0.1	-2.80	2.34	0.27	0.21	0.23	328140	41580	180	0	0	0	0	logfile
✔	6VU3	21386	2021-04-13	2020-02-14	3.7	4.15	—	75.0	0.008	1.23	37.0	0.10	16.64	0.01	1.029	8.05	8.23	7.1	91.8	1.1	-2.95	0.26	0.02	0.12	3.8	0.006	1.10	0.0	0.05	20.18	0.01	1.646	42.33	0.01	12.1	87.8	0.2	-2.54	3.25	0.42	0.29	0.23	300609	9496	67	4755	3	0	124724	logfile
✔	6Z3A	11055	2021-04-04	2020-05-19	3.8	4.08	—	3.8	0.007	1.23	2.0	0.06	12.44	0.01	1.678	10.95	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.003	0.82	0.0	0.04	13.02	0.00	2.002	20.68	0.08	8.8	91.2	0.0	-1.81	2.33	0.79	0.75	0.24	46142	5730	6	0	4	0	0	logfile
✔	6LB1	0867	2021-04-23	2019-11-13	2.58	2.93	—	38.0	0.011	1.02	0.0	0.06	10.72	0.01	0.386	65.49	0.16	7.2	92.7	0.1	-2.98	0.27	0.02	0.07	2.6	0.005	0.96	0.0	0.05	12.51	0.01	1.915	25.89	0.01	11.1	88.9	0.0	-2.93	1.87	0.37	0.23	0.24	329705	42029	183	0	0	0	0	logfile
✔	6YUF	10930	2021-04-02	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.70	8.0	0.08	18.03	0.01	2.033	13.13	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.003	0.68	0.0	0.04	17.23	0.00	1.125	12.56	0.00	6.7	93.3	0.0	-0.71	1.33	0.77	0.76	0.25	19528	2264	8	64	4	0	0	logfile
✔	6LBQ	0871	2021-04-24	2019-11-14	2.6	2.57	—	38.0	0.012	1.05	0.0	0.07	14.32	0.01	0.262	60.54	0.49	5.6	94.3	0.1	-2.10	0.15	0.02	-0.02	2.5	0.004	0.79	0.0	0.05	13.53	0.01	1.864	18.71	0.01	7.3	92.7	0.0	-2.27	1.49	0.23	0.17	0.26	329705	42029	183	0	0	0	0	logfile
✔	5KPX	8282	2021-04-05	2016-07-05	3.9	5.30	4.08	3.8	0.008	1.18	6.0	0.09	14.40	0.01	2.087	29.47	0.58	13.2	80.2	6.6	-4.56	0.90	0.77	0.50	4.0	0.005	0.69	0.0	0.04	15.96	0.01	2.025	31.48	0.02	11.2	87.8	1.0	-2.12	1.62	0.94	0.90	0.26	154603	6623	59	4812	0	0	0	logfile
✔	6H5i	0140	2021-04-05	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	13.36	0.00	2.074	14.63	0.00	4.3	95.7	0.0	0.62	1.46	0.38	0.26	0.26	43900	5392	26	0	0	0	0	logfile
✔	5SYG	8323	2021-04-07	2016-08-11	3.5	4.52	—	4.3	0.014	2.16	26.0	0.08	16.28	0.01	1.825	21.96	1.10	4.7	94.9	0.4	-3.19	0.55	0.72	0.18	4.3	0.004	0.89	0.0	0.05	15.93	0.01	1.968	23.24	0.00	4.8	95.2	0.0	0.21	1.72	0.56	0.79	0.27	176592	22152	104	26	78	0	0	logfile
✔	7AS9	11890	2021-04-03	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.18	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.006	0.88	0.0	0.04	18.11	0.01	1.956	40.20	0.03	12.5	87.4	0.1	-2.88	1.13	0.92	0.84	0.28	93137	3720	32	2999	0	0	0	logfile
✔	6PMJ	20395	2021-04-05	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	10.86	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.005	0.78	0.0	0.04	16.29	0.01	1.790	30.86	0.00	11.7	88.2	0.1	-2.87	1.87	0.89	0.78	0.28	57984	3453	10	110	4	0	28609	logfile

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