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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GEN | 4396 | 2022-12-21 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.46 | 0.01 | 2.109 | 5.91 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 21.23 | 0.00 | 0.995 | 17.66 | 0.20 | 4.8 | 95.2 | 0.0 | -0.46 | 1.69 | 0.84 | 0.74 | 0.00 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✔ | 7YG1 | 33804 | 2022-12-11 | 2022-07-09 | 3.77 | 4.01 | 3.78 | 3.9 | 0.005 | 1.15 | 1.0 | 0.06 | 14.00 | 0.01 | 2.230 | 42.87 | 1.33 | 14.0 | 86.0 | 0.0 | -3.77 | 0.65 | 0.65 | 0.57 | 3.9 | 0.005 | 0.97 | 0.0 | 0.05 | 16.57 | 0.01 | 2.087 | 31.79 | 0.88 | 10.2 | 89.6 | 0.1 | -2.07 | 1.48 | 0.68 | 0.69 | 0.02 | 6208 | 770 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2022-12-12 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 17.88 | 0.00 | 2.141 | 15.46 | 0.41 | 0.7 | 99.3 | 0.0 | 2.04 | 2.05 | 0.60 | 0.86 | 0.03 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2022-12-16 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 16.99 | 0.01 | 1.960 | 18.18 | 0.55 | 10.5 | 89.4 | 0.1 | -1.71 | 2.06 | 0.28 | 0.23 | 0.03 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 7RTT | 24688 | 2022-12-11 | 2021-08-15 | 3.5 | 3.91 | — | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 14.95 | 0.00 | 2.239 | 5.02 | 0.00 | 3.6 | 96.4 | 0.0 | 2.65 | 0.60 | 0.73 | 1.03 | 3.9 | 0.003 | 0.52 | 0.0 | 0.04 | 16.54 | 0.00 | 2.204 | 6.22 | 0.45 | 4.5 | 95.5 | 0.0 | 3.76 | 1.64 | 0.61 | 0.74 | 0.07 | 6268 | 791 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 6iP1 | 9697 | 2022-12-12 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 8.09 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.93 | 0.0 | 0.04 | 18.52 | 0.00 | 2.136 | 17.12 | 0.59 | 7.8 | 92.2 | 0.0 | -0.47 | 1.27 | 0.61 | 0.75 | 0.08 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2022-12-14 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.80 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.70 | 0.0 | 0.04 | 14.56 | 0.00 | 2.047 | 30.78 | 0.28 | 5.0 | 95.0 | 0.0 | 0.03 | 4.65 | 0.60 | 0.35 | 0.08 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LC9 | 23270 | 2022-12-11 | 2021-01-10 | 3.2 | 3.25 | — | 3.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.46 | 0.00 | 1.884 | 31.60 | 18.58 | 13.4 | 86.6 | 0.0 | -4.15 | 0.71 | 0.77 | -0.84 | 3.1 | 0.009 | 0.92 | 0.0 | 0.05 | 16.86 | 0.00 | 1.984 | 46.70 | 2.65 | 14.8 | 85.2 | 0.0 | -3.60 | 0.67 | 0.70 | 0.81 | 0.10 | 3497 | 525 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MF3 | 23810 | 2022-12-14 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.45 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.003 | 0.71 | 0.0 | 0.04 | 17.45 | 0.00 | 1.915 | 18.68 | 0.24 | 7.4 | 92.6 | 0.0 | -0.79 | 1.45 | 0.91 | 0.74 | 0.10 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7RTU | 24689 | 2022-12-11 | 2021-08-15 | 3.89 | 4.06 | — | 4.1 | 0.003 | 0.51 | 0.0 | 0.04 | 14.84 | 0.00 | 2.175 | 7.11 | 0.16 | 3.1 | 96.9 | 0.0 | 4.32 | 0.55 | 0.69 | 0.15 | 4.1 | 0.004 | 0.56 | 0.0 | 0.04 | 16.78 | 0.00 | 2.208 | 7.11 | 0.16 | 2.8 | 97.2 | 0.0 | 4.06 | 0.28 | 0.62 | 0.73 | 0.11 | 5962 | 754 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7Woo | 32653 | 2022-12-13 | 2022-01-22 | 3.71 | 4.08 | — | 3.9 | 0.010 | 1.69 | 139.0 | 0.10 | 15.86 | 0.01 | 1.041 | 23.20 | 4.33 | 9.3 | 88.5 | 2.2 | -3.11 | 0.47 | 0.44 | 0.31 | 3.9 | 0.003 | 0.80 | 0.0 | 0.04 | 16.41 | 0.00 | 2.026 | 14.26 | 0.37 | 7.9 | 91.8 | 0.3 | -0.29 | 1.64 | 0.47 | 0.44 | 0.12 | 66949 | 8644 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B6X | 12057 | 2022-12-12 | 2020-12-08 | 3.6 | 2.59 | — | 2.5 | 0.008 | 1.06 | 0.0 | 0.06 | 14.17 | 0.01 | 2.035 | 44.50 | 0.09 | 13.3 | 86.7 | 0.0 | -2.77 | 0.75 | 0.72 | 0.42 | 2.5 | 0.003 | 0.73 | 0.0 | 0.04 | 16.12 | 0.00 | 2.142 | 22.87 | 0.69 | 7.2 | 92.8 | 0.0 | -1.05 | 1.37 | 0.75 | 0.71 | 0.12 | 10470 | 1290 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2022-12-11 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.15 | 0.00 | 2.076 | 14.87 | 0.34 | 4.1 | 95.9 | 0.0 | 1.09 | 1.96 | 0.38 | 0.25 | 0.14 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UMM | 20820 | 2022-12-15 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 12.01 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | 4.1 | 0.003 | 0.92 | 0.0 | 0.05 | 14.46 | 0.00 | 2.090 | 19.20 | 0.37 | 3.7 | 96.3 | 0.0 | 0.74 | 1.20 | 0.62 | 0.82 | 0.16 | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XMX | 33307 | 2022-12-16 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.011 | 1.29 | 7.0 | 0.09 | 12.50 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 20.0 | 0.004 | 0.73 | 0.0 | 0.05 | 14.45 | 0.00 | 2.073 | 13.41 | 0.38 | 6.3 | 93.6 | 0.1 | -1.25 | 1.16 | 0.34 | 0.17 | 0.17 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6YUF | 10930 | 2022-12-14 | 2020-04-27 | 3.94 | 4.30 | 4.21 | 4.1 | 0.018 | 1.71 | 8.0 | 0.08 | 18.03 | 0.01 | 2.033 | 13.41 | 0.24 | 8.9 | 91.1 | 0.0 | -3.37 | 0.77 | 0.75 | 0.41 | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 19.04 | 0.00 | 2.083 | 14.63 | 0.24 | 7.4 | 92.6 | 0.0 | -0.88 | 0.64 | 0.78 | 0.76 | 0.18 | 19528 | 2264 | 8 | 64 | 4 | 0 | 0 | logfile |
✔ | 6MDo | 9102 | 2022-12-21 | 2018-09-04 | 3.9 | 5.46 | — | 4.2 | 0.015 | 1.44 | 0.0 | 0.12 | 13.30 | 0.01 | 2.012 | 6.72 | 0.16 | 0.3 | 99.6 | 0.0 | -3.28 | 0.79 | 0.68 | 0.38 | 4.2 | 0.005 | 0.72 | 0.0 | 0.08 | 13.76 | 0.00 | 1.781 | 20.24 | 0.41 | 7.9 | 92.1 | 0.0 | -1.53 | 1.53 | 0.87 | 0.85 | 0.19 | 45373 | 2843 | 13 | 0 | 11 | 0 | 22858 | logfile |
✔ | 5L4K | 4002 | 2022-12-15 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.08 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 17.33 | 0.00 | 1.807 | 15.67 | 0.55 | 8.2 | 91.3 | 0.5 | -1.41 | 1.81 | 0.37 | 0.70 | 0.19 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 6Z3A | 11055 | 2022-12-21 | 2020-05-19 | 3.8 | 4.08 | — | 3.8 | 0.007 | 1.25 | 2.0 | 0.06 | 12.46 | 0.01 | 1.678 | 11.06 | 1.08 | 11.1 | 88.8 | 0.1 | -4.47 | 0.78 | 0.75 | 0.21 | 3.8 | 0.004 | 0.97 | 0.0 | 0.05 | 15.71 | 0.00 | 1.980 | 28.03 | 0.49 | 9.3 | 90.7 | 0.0 | -1.99 | 2.34 | 0.80 | 0.76 | 0.21 | 46142 | 5730 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XSS | 22305 | 2022-12-11 | 2020-07-16 | 3.7 | 3.37 | — | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 12.31 | 0.00 | 1.843 | 28.34 | 0.00 | 2.5 | 97.5 | 0.0 | -0.32 | 0.74 | 0.78 | 0.04 | 3.3 | 0.003 | 0.80 | 0.0 | 0.04 | 16.91 | 0.00 | 2.278 | 17.30 | 0.24 | 1.0 | 99.0 | 0.0 | 2.54 | 1.34 | 0.75 | 0.79 | 0.21 | 8048 | 1040 | 4 | 0 | 0 | 0 | 0 | logfile |