Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GEN	4396	2022-12-21	2018-04-27	3.6	4.67	—	4.5	0.004	0.75	0.0	0.04	20.46	0.01	2.109	5.91	8.77	3.9	96.0	0.0	-4.51	0.78	0.58	-0.18	4.4	0.003	0.77	0.0	0.04	21.23	0.00	0.995	17.66	0.20	4.8	95.2	0.0	-0.46	1.69	0.84	0.74	0.00	44481	4683	29	346	151	0	0	logfile
✔	7YG1	33804	2022-12-11	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.87	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.005	0.97	0.0	0.05	16.57	0.01	2.087	31.79	0.88	10.2	89.6	0.1	-2.07	1.48	0.68	0.69	0.02	6208	770	2	0	0	0	0	logfile
✔	6A7F	6993	2022-12-12	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.72	0.0	0.04	17.88	0.00	2.141	15.46	0.41	0.7	99.3	0.0	2.04	2.05	0.60	0.86	0.03	10830	1410	30	0	0	0	0	logfile
✔	6FLQ	4275	2022-12-16	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.7	0.005	0.89	0.0	0.05	16.99	0.01	1.960	18.18	0.55	10.5	89.4	0.1	-1.71	2.06	0.28	0.23	0.03	30201	3868	10	91	3	0	0	logfile
✔	7RTT	24688	2022-12-11	2021-08-15	3.5	3.91	—	3.9	0.003	0.54	0.0	0.04	14.95	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.003	0.52	0.0	0.04	16.54	0.00	2.204	6.22	0.45	4.5	95.5	0.0	3.76	1.64	0.61	0.74	0.07	6268	791	8	0	14	0	0	logfile
✔	6iP1	9697	2022-12-12	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	8.09	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.04	18.52	0.00	2.136	17.12	0.59	7.8	92.2	0.0	-0.47	1.27	0.61	0.75	0.08	11245	1420	8	0	0	0	0	logfile
✔	8D6X	27225	2022-12-14	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.80	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.70	0.0	0.04	14.56	0.00	2.047	30.78	0.28	5.0	95.0	0.0	0.03	4.65	0.60	0.35	0.08	68362	8957	41	0	0	0	0	logfile
✔	7LC9	23270	2022-12-11	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	7MF3	23810	2022-12-14	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.45	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.71	0.0	0.04	17.45	0.00	1.915	18.68	0.24	7.4	92.6	0.0	-0.79	1.45	0.91	0.74	0.10	22938	2822	12	0	8	0	0	logfile
✔	7RTU	24689	2022-12-11	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.56	0.0	0.04	16.78	0.00	2.208	7.11	0.16	2.8	97.2	0.0	4.06	0.28	0.62	0.73	0.11	5962	754	6	0	12	0	0	logfile
✔	7Woo	32653	2022-12-13	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.20	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.80	0.0	0.04	16.41	0.00	2.026	14.26	0.37	7.9	91.8	0.3	-0.29	1.64	0.47	0.44	0.12	66949	8644	12	0	0	0	0	logfile
✔	7B6X	12057	2022-12-12	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.50	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.73	0.0	0.04	16.12	0.00	2.142	22.87	0.69	7.2	92.8	0.0	-1.05	1.37	0.75	0.71	0.12	10470	1290	8	0	0	0	0	logfile
✔	6H5i	0140	2022-12-11	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	15.15	0.00	2.076	14.87	0.34	4.1	95.9	0.0	1.09	1.96	0.38	0.25	0.14	43900	5392	26	0	0	0	0	logfile
✔	6UMM	20820	2022-12-15	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	12.01	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.003	0.92	0.0	0.05	14.46	0.00	2.090	19.20	0.37	3.7	96.3	0.0	0.74	1.20	0.62	0.82	0.16	23658	3184	10	0	0	0	0	logfile
✔	7XMX	33307	2022-12-16	2022-04-27	3.62	3.63	3.44	22.0	0.011	1.29	7.0	0.09	12.50	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.004	0.73	0.0	0.05	14.45	0.00	2.073	13.41	0.38	6.3	93.6	0.1	-1.25	1.16	0.34	0.17	0.17	28727	3700	12	0	24	0	0	logfile
✔	6YUF	10930	2022-12-14	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.71	8.0	0.08	18.03	0.01	2.033	13.41	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.003	0.76	0.0	0.04	19.04	0.00	2.083	14.63	0.24	7.4	92.6	0.0	-0.88	0.64	0.78	0.76	0.18	19528	2264	8	64	4	0	0	logfile
✔	6MDo	9102	2022-12-21	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.12	13.30	0.01	2.012	6.72	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.005	0.72	0.0	0.08	13.76	0.00	1.781	20.24	0.41	7.9	92.1	0.0	-1.53	1.53	0.87	0.85	0.19	45373	2843	13	0	11	0	22858	logfile
✔	5L4K	4002	2022-12-15	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.08	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.003	0.76	0.0	0.04	17.33	0.00	1.807	15.67	0.55	8.2	91.3	0.5	-1.41	1.81	0.37	0.70	0.19	79649	5000	12	0	0	0	39990	logfile
✔	6Z3A	11055	2022-12-21	2020-05-19	3.8	4.08	—	3.8	0.007	1.25	2.0	0.06	12.46	0.01	1.678	11.06	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.004	0.97	0.0	0.05	15.71	0.00	1.980	28.03	0.49	9.3	90.7	0.0	-1.99	2.34	0.80	0.76	0.21	46142	5730	6	0	4	0	0	logfile
✔	6XSS	22305	2022-12-11	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.91	0.00	2.278	17.30	0.24	1.0	99.0	0.0	2.54	1.34	0.75	0.79	0.21	8048	1040	4	0	0	0	0	logfile

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