Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J5P	5778	2023-04-24	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.4	0.004	0.91	0.0	0.04	16.97	0.00	2.085	17.32	0.41	5.3	94.6	0.1	0.51	2.09	0.74	0.79	0.11	18636	2324	4	0	44	0	0	logfile
✔	8GWE	34310	2023-04-26	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.89	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	7Woo	32653	2023-04-24	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.81	0.0	0.04	16.42	0.00	2.097	15.49	0.35	8.6	91.1	0.3	-0.38	1.64	0.47	0.44	0.13	66949	8644	12	0	0	0	0	logfile
✔	6iP1	9697	2023-04-22	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.05	18.31	0.00	2.178	17.84	0.76	8.1	91.9	0.0	-0.42	1.25	0.61	0.75	0.15	11245	1420	8	0	0	0	0	logfile
✔	7VQ4	32085	2023-04-20	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.69	0.0	0.04	17.32	0.00	2.224	8.97	0.43	4.2	95.8	0.0	2.91	0.79	0.59	0.78	0.16	6306	800	2	0	0	0	0	logfile
✔	7XMX	33307	2023-04-28	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.55	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.70	0.0	0.04	14.46	0.00	2.060	11.54	0.19	5.7	94.2	0.1	-1.12	1.15	0.33	0.16	0.18	28727	3700	12	0	24	0	0	logfile
✔	6FLQ	4275	2023-04-29	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.003	0.76	0.0	0.04	16.91	0.00	1.971	14.51	0.26	8.9	91.0	0.1	-1.55	2.04	0.27	0.21	0.19	30201	3868	10	91	3	0	0	logfile
✔	7Vo9	32049	2023-04-20	2021-10-13	3.8	3.98	3.82	3.8	0.011	1.58	1.0	0.09	23.08	0.00	2.124	6.40	0.76	0.8	99.2	0.0	2.89	0.75	0.63	0.88	3.9	0.005	0.73	0.0	0.04	27.04	0.00	1.910	21.50	1.52	1.2	98.8	0.0	0.77	1.11	0.78	0.68	0.19	5711	524	10	86	12	0	0	logfile
✔	7WU7	32823	2023-04-24	2022-02-07	3.85	3.66	4.04	3.8	0.005	0.81	0.0	0.05	14.10	0.00	2.146	18.27	0.01	5.3	94.7	0.1	-1.14	0.70	0.65	0.47	3.8	0.003	0.81	0.0	0.05	16.42	0.00	2.125	19.61	0.46	5.8	94.2	0.0	-1.17	0.54	0.70	0.67	0.20	67031	8727	26	0	4	0	0	logfile
✔	7KNU	22963	2023-04-20	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.25	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.71	0.0	0.04	15.88	0.00	2.203	12.95	0.24	4.4	95.6	0.0	-0.32	0.56	0.59	0.76	0.21	3809	467	3	0	0	0	0	logfile
✔	7K8A	22724	2023-04-21	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	7KY5	23068	2023-04-22	2020-12-07	3.98	4.52	—	4.3	0.004	1.09	0.0	0.05	12.78	0.01	2.200	16.72	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.87	0.0	0.04	15.20	0.00	1.967	21.02	0.74	7.9	92.1	0.0	-1.15	1.03	0.73	0.78	0.22	12483	1534	6	0	15	0	0	logfile
✔	6YUF	10930	2023-04-25	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.71	8.0	0.08	18.03	0.01	2.033	13.39	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.003	0.77	0.0	0.04	19.06	0.00	2.048	15.09	0.34	7.5	92.5	0.0	-0.98	0.64	0.78	0.77	0.22	19528	2264	8	64	4	0	0	logfile
✔	7QFP	13946	2023-04-21	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.003	0.77	0.0	0.05	16.83	0.00	2.118	16.48	0.44	11.9	88.0	0.1	-2.89	0.77	0.85	0.76	0.24	9996	1233	1	0	0	0	0	logfile
✔	7YG0	33803	2023-04-22	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	15.92	0.00	2.114	27.70	0.49	5.4	94.5	0.1	-0.73	2.16	0.67	0.73	0.24	13336	1708	2	0	0	0	0	logfile
✔	7EGB	31111	2023-04-21	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	8CSA	26961	2023-04-26	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.004	0.67	0.0	0.04	15.01	0.00	2.101	12.64	0.23	4.2	95.8	0.0	0.02	1.66	0.83	0.79	0.26	23442	3003	3	0	0	0	0	logfile
✔	6XSS	22305	2023-04-20	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	7W0C	32238	2023-04-22	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.63	0.0	0.04	15.18	0.00	2.147	16.00	0.15	4.3	95.6	0.1	-0.03	0.46	0.86	0.74	0.26	13663	1492	5	72	2	0	0	logfile
✔	6VQU	21357	2023-04-24	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.09	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.003	0.72	0.0	0.04	14.96	0.00	2.196	12.02	0.32	2.6	97.4	0.0	2.01	1.05	0.73	0.88	0.26	9156	1178	2	0	0	0	0	logfile

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