Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BW8	30230	2021-12-01	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.20	0.01	2.199	20.56	0.74	12.0	88.0	0.0	-3.10	1.56	0.68	0.63	0.49	6021	737	3	0	0	0	0	logfile
✔	7NGH	12314	2021-12-02	2021-02-09	3.5	4.33	—	4.0	0.005	0.64	0.0	0.04	12.54	0.00	2.169	18.02	0.00	4.9	95.1	0.0	-2.00	0.74	0.86	1.13	4.0	0.003	0.82	0.0	0.04	14.23	0.00	2.101	16.94	0.37	4.3	95.7	0.0	1.18	1.12	0.73	0.84	0.52	10315	1374	7	0	0	0	0	logfile
✔	5V7V	8642	2021-12-01	2017-03-20	3.9	3.88	—	3.8	0.011	1.19	1.0	0.06	12.64	0.01	1.713	18.52	0.00	11.2	88.7	0.2	-4.92	0.55	0.69	1.61	3.8	0.003	0.65	0.0	0.04	15.80	0.00	1.965	14.94	0.57	9.4	90.6	0.0	-1.01	1.02	0.61	0.78	0.54	9919	613	1	0	9	0	4811	logfile
✔	7KNT	22962	2021-12-01	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.50	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.8	0.003	0.69	0.0	0.04	16.18	0.00	2.258	11.50	0.49	2.5	97.5	0.0	0.69	0.47	0.57	0.76	0.54	3716	455	2	0	0	0	0	logfile
✔	6WFQ	21652	2021-12-01	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.91	0.0	0.05	19.24	0.01	2.157	23.46	0.27	6.5	93.5	0.0	-0.40	1.01	0.85	0.81	0.54	4164	447	4	30	0	0	0	logfile
✔	7ARi	11883	2021-12-01	2020-10-25	3.4	3.64	—	3.6	0.003	0.78	0.0	0.05	13.73	0.00	2.339	3.87	0.68	4.4	95.6	0.0	-5.94	0.64	0.67	0.67	3.6	0.003	0.74	0.0	0.04	16.20	0.00	2.181	9.65	0.00	4.9	95.1	0.0	-1.76	0.88	0.70	0.77	0.55	9538	1246	4	0	0	0	0	logfile
✔	6UKT	20812	2021-12-01	2019-10-05	3.87	4.71	—	4.3	0.007	1.02	0.0	0.06	16.90	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.004	0.74	0.0	0.04	17.69	0.01	2.138	15.06	0.46	12.0	87.9	0.1	-2.44	0.56	0.90	0.84	0.57	8979	1204	6	0	0	0	0	logfile
✔	6iC3	4452	2021-12-01	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.277	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	4.2	0.004	0.88	0.0	0.05	17.01	0.01	2.213	18.81	0.87	12.8	87.2	0.0	-5.20	1.24	0.71	0.75	0.57	5472	728	8	0	0	0	0	logfile
✔	7E7S	31003	2021-12-01	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.4	0.003	0.58	0.0	0.04	15.87	0.00	2.214	8.57	0.23	3.1	96.9	0.0	1.43	1.28	0.67	0.82	0.57	7884	1020	1	0	2	0	0	logfile
✔	7RTV	24690	2021-12-01	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	6F07	4163	2021-12-02	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.78	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.012	0.85	0.0	0.04	15.61	0.01	2.110	10.83	0.61	4.9	95.1	0.0	0.86	1.53	0.56	0.70	0.61	10149	1227	4	0	2	0	0	logfile
✔	7F8W	31494	2021-12-01	2021-07-02	3.1	2.94	—	3.2	0.005	1.05	0.0	0.06	14.10	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.1	0.005	0.80	0.0	0.04	16.21	0.01	2.040	18.76	0.11	5.5	94.5	0.0	-0.97	1.21	0.58	0.65	0.61	8486	1087	6	0	0	0	0	logfile
✔	6XWQ	10635	2021-12-01	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.77	0.0	0.04	15.44	0.00	2.161	13.51	0.20	3.3	96.7	0.0	1.14	1.17	0.72	0.84	0.62	9572	1281	6	0	0	0	0	logfile
✔	7ASA	11891	2021-12-01	2020-10-27	3.5	3.33	—	3.2	0.013	1.98	6.0	0.10	15.71	0.02	2.490	0.68	0.18	3.5	95.8	0.7	-2.30	0.75	0.75	1.26	3.2	0.011	0.91	0.0	0.04	17.52	0.01	2.051	16.94	0.55	5.6	94.3	0.1	-0.25	1.45	0.76	0.76	0.62	8104	750	5	116	0	0	0	logfile
✔	6YS8	10893	2021-12-01	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.005	0.93	0.0	0.05	17.11	0.00	2.095	16.40	0.85	4.7	94.2	1.1	0.64	0.71	0.66	0.82	0.63	5624	737	7	0	0	0	0	logfile
✔	6F1V	4170	2021-12-01	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.29	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	3.7	0.003	0.68	0.0	0.04	15.59	0.00	2.229	13.48	0.18	6.1	93.9	0.0	1.09	1.71	0.48	0.75	0.63	5164	628	2	0	0	0	0	logfile
✔	7K8B	22725	2021-12-01	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.003	0.79	0.0	0.04	16.91	0.01	2.147	15.10	2.36	5.4	94.6	0.0	-0.14	1.19	0.42	0.64	0.64	5543	726	1	0	0	0	0	logfile
✔	7KA2	22756	2021-12-02	2020-09-29	3.6	3.77	—	3.6	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.87	0.83	1.20	3.6	0.003	0.70	0.0	0.04	15.79	0.00	2.100	13.58	0.54	2.7	97.3	0.0	1.25	1.25	0.87	0.84	0.66	10472	1372	4	0	0	0	0	logfile
✔	6KKT	0702	2021-12-01	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.35	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	20.0	0.012	1.31	1.0	0.04	12.92	0.00	1.981	13.34	1.70	3.9	96.1	0.0	0.18	0.64	0.15	0.08	0.66	8416	1074	4	0	24	0	0	logfile
✔	7K9X	22755	2021-12-02	2020-09-29	3.8	3.44	—	3.7	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.79	0.81	0.97	3.7	0.003	0.70	0.0	0.04	15.77	0.00	2.133	14.00	0.45	2.9	97.1	0.0	1.20	0.81	0.79	0.81	0.66	10472	1372	4	0	0	0	0	logfile

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