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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6W62 | 21551 | 2022-05-12 | 2020-03-16 | 3.9 | 4.04 | — | 4.0 | 0.003 | 0.64 | 1.0 | 0.04 | 14.23 | 0.00 | 1.883 | 16.36 | 0.00 | 10.2 | 89.4 | 0.3 | -2.04 | 0.71 | 0.67 | 1.02 | 4.0 | 0.004 | 0.80 | 0.0 | 0.05 | 16.93 | 0.01 | 2.106 | 18.20 | 0.59 | 10.4 | 89.6 | 0.0 | -1.85 | 1.21 | 0.72 | 0.68 | 0.37 | 7387 | 910 | 2 | 24 | 0 | 0 | 0 | logfile |
✔ | 7K8V | 22732 | 2022-05-15 | 2020-09-27 | 3.8 | 4.64 | — | 4.0 | 0.003 | 0.59 | 0.0 | 0.07 | 12.91 | 0.00 | 2.005 | 11.46 | 0.15 | 4.8 | 95.1 | 0.2 | -2.90 | 0.81 | 0.74 | 0.42 | 4.1 | 0.009 | 0.97 | 1.0 | 0.04 | 14.65 | 0.00 | 2.045 | 19.40 | 0.26 | 6.4 | 93.4 | 0.2 | -1.50 | 0.69 | 0.82 | 0.79 | 0.37 | 26248 | 3390 | 20 | 0 | 41 | 0 | 0 | logfile |
✔ | 7P1J | 13162 | 2022-05-12 | 2021-07-01 | 3.04 | 4.02 | 2.96 | 4.0 | 0.002 | 0.48 | 0.0 | 0.03 | 8.89 | 0.00 | 2.305 | 5.96 | 2.29 | 3.5 | 96.5 | 0.0 | 2.14 | 0.65 | 0.71 | 0.64 | 4.0 | 0.013 | 1.57 | 0.0 | 0.05 | 14.60 | 0.00 | 2.181 | 23.02 | 0.57 | 6.0 | 94.0 | 0.0 | 0.85 | 1.42 | 0.66 | 0.73 | 0.37 | 6502 | 868 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o6B | 12737 | 2022-05-13 | 2021-04-09 | 3.88 | 4.21 | 4.15 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 11.54 | 0.01 | 2.128 | 6.00 | 0.38 | 4.3 | 95.7 | 0.0 | -0.87 | 0.75 | 0.67 | 0.37 | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 14.05 | 0.00 | 2.012 | 9.95 | 0.38 | 4.0 | 96.0 | 0.0 | 0.60 | 1.16 | 0.76 | 0.70 | 0.37 | 14200 | 879 | 1 | 0 | 0 | 0 | 7040 | logfile |
✔ | 7RTU | 24689 | 2022-05-12 | 2021-08-15 | 3.89 | 4.06 | — | 4.1 | 0.003 | 0.51 | 0.0 | 0.04 | 14.84 | 0.00 | 2.175 | 7.11 | 0.16 | 3.1 | 96.9 | 0.0 | 4.32 | 0.55 | 0.69 | 0.15 | 4.1 | 0.003 | 0.52 | 0.0 | 0.04 | 16.76 | 0.00 | 2.223 | 7.20 | 0.47 | 2.5 | 97.5 | 0.0 | 4.38 | 0.29 | 0.61 | 0.71 | 0.38 | 5962 | 754 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6DNC | 7970 | 2022-05-23 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 13.50 | 0.01 | 1.764 | 6.87 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.004 | 0.68 | 0.0 | 0.03 | 15.83 | 0.00 | 1.979 | 28.91 | 0.75 | 9.3 | 90.6 | 0.1 | -1.48 | 2.46 | 0.96 | 0.91 | 0.38 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 6YBV | 10774 | 2022-05-12 | 2020-03-17 | 3.8 | 3.86 | 4.60 | 3.6 | 0.008 | 1.47 | 0.0 | 0.07 | 17.69 | 0.01 | 2.202 | 9.58 | 6.67 | 6.1 | 93.4 | 0.5 | -2.26 | 0.34 | 0.56 | 1.26 | 3.6 | 0.004 | 0.86 | 0.0 | 0.05 | 18.51 | 0.00 | 2.029 | 20.34 | 0.80 | 11.9 | 87.9 | 0.1 | -2.61 | 3.36 | 0.34 | 0.60 | 0.38 | 6731 | 769 | 5 | 78 | 0 | 0 | 0 | logfile |
✔ | 7KNi | 22950 | 2022-05-17 | 2020-11-04 | 3.91 | 4.86 | 4.13 | 3.9 | 0.003 | 0.61 | 0.0 | 0.05 | 14.27 | 0.01 | 2.045 | 4.31 | 0.07 | 4.4 | 95.6 | 0.0 | -1.75 | 0.77 | 0.56 | 0.26 | 4.0 | 0.005 | 0.74 | 0.0 | 0.05 | 15.94 | 0.01 | 2.046 | 22.90 | 0.26 | 7.2 | 92.8 | 0.0 | -1.12 | 1.42 | 0.84 | 0.74 | 0.38 | 39574 | 4878 | 18 | 0 | 68 | 0 | 0 | logfile |
✔ | 6KKR | 0701 | 2022-05-12 | 2019-07-27 | 2.9 | 2.91 | — | 20.0 | 0.008 | 1.10 | 0.0 | 0.06 | 10.99 | 0.01 | 2.348 | 3.23 | 0.23 | 3.9 | 96.1 | 0.0 | -3.53 | 0.05 | 0.00 | -0.07 | 2.8 | 0.003 | 0.77 | 0.0 | 0.04 | 13.11 | 0.00 | 2.105 | 13.63 | 2.15 | 4.1 | 95.9 | 0.0 | 0.35 | 1.64 | 0.12 | 0.11 | 0.38 | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 7F5V | 31468 | 2022-05-14 | 2021-06-22 | 3.6 | 4.00 | 3.42 | 3.9 | 0.005 | 0.69 | 0.0 | 0.04 | 13.93 | 0.00 | 2.076 | 17.04 | 0.18 | 6.9 | 93.0 | 0.1 | -4.69 | 0.75 | 0.80 | 1.04 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 15.83 | 0.01 | 2.053 | 17.23 | 0.36 | 6.3 | 93.7 | 0.0 | -1.19 | 0.64 | 0.74 | 0.79 | 0.38 | 20912 | 2760 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oHP | 12904 | 2022-05-18 | 2021-05-11 | 3.9 | 5.25 | 4.02 | 3.0 | 0.005 | 0.54 | 0.0 | 0.03 | 16.61 | 0.00 | 1.733 | 6.26 | 1.01 | 4.3 | 95.5 | 0.2 | 1.17 | 0.80 | 0.64 | 0.37 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 18.35 | 0.00 | 1.803 | 22.43 | 0.37 | 7.9 | 92.1 | 0.0 | -1.31 | 1.75 | 0.83 | 0.74 | 0.38 | 143939 | 5290 | 35 | 1781 | 1 | 0 | 63394 | logfile |
✔ | 6TB4 | 10438 | 2022-05-17 | 2019-10-31 | 3.8 | 4.42 | 3.85 | 3.8 | 0.008 | 1.08 | 1.0 | 0.06 | 15.27 | 0.01 | 2.044 | 11.30 | 2.05 | 9.8 | 89.5 | 0.8 | -5.38 | 0.70 | 0.55 | 0.41 | 3.8 | 0.006 | 0.93 | 1.0 | 0.04 | 16.11 | 0.00 | 1.716 | 14.32 | 0.10 | 7.6 | 92.3 | 0.1 | -0.37 | 0.96 | 0.79 | 0.74 | 0.39 | 40740 | 5275 | 13 | 0 | 76 | 0 | 0 | logfile |
✔ | 6PMi | 20394 | 2022-05-13 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 15.81 | 0.01 | 1.949 | 12.38 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.008 | 0.93 | 1.0 | 0.04 | 17.34 | 0.01 | 1.541 | 26.76 | 0.37 | 11.1 | 88.8 | 0.2 | -3.01 | 1.26 | 0.86 | 0.77 | 0.40 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✔ | 7CHH | 30374 | 2022-05-16 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.09 | 0.0 | 0.06 | 15.08 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.3 | 0.012 | 1.17 | 0.0 | 0.05 | 15.96 | 0.01 | 1.918 | 20.25 | 0.00 | 6.6 | 93.4 | 0.0 | -1.77 | 1.33 | 0.21 | 0.12 | 0.40 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 7WVP | 32856 | 2022-05-16 | 2022-02-10 | 3.7 | 3.43 | — | 3.8 | 0.005 | 0.85 | 2.0 | 0.06 | 13.45 | 0.01 | 2.335 | 3.40 | 0.40 | 3.9 | 95.9 | 0.1 | -4.59 | 0.70 | 0.59 | 0.30 | 3.8 | 0.009 | 1.05 | 2.0 | 0.05 | 16.00 | 0.01 | 1.930 | 19.91 | 0.58 | 4.9 | 95.1 | 0.0 | -1.52 | 1.53 | 0.75 | 0.67 | 0.40 | 29601 | 3750 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUo | 20204 | 2022-05-20 | 2019-05-05 | 3.7 | 4.99 | — | 3.3 | 0.007 | 0.83 | 1.0 | 0.04 | 15.93 | 0.02 | 1.584 | 12.15 | 0.36 | 5.1 | 94.8 | 0.1 | -3.86 | 0.89 | 0.75 | 0.10 | 3.3 | 0.005 | 0.82 | 0.0 | 0.04 | 17.39 | 0.01 | 1.824 | 40.84 | 1.09 | 6.8 | 93.1 | 0.0 | -1.93 | 2.64 | 0.92 | 0.84 | 0.40 | 146867 | 6028 | 61 | 4642 | 14 | 0 | 0 | logfile |
✔ | 7JT3 | 22472 | 2022-05-21 | 2020-08-17 | 3.7 | 4.04 | 4.23 | 3.8 | 0.006 | 0.99 | 3.0 | 0.08 | 13.56 | 0.01 | 2.077 | 12.80 | 1.24 | 12.9 | 85.4 | 1.7 | -5.28 | 0.83 | 0.78 | 0.65 | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 16.96 | 0.01 | 2.019 | 30.17 | 0.82 | 12.0 | 87.9 | 0.1 | -3.29 | 0.89 | 0.85 | 0.80 | 0.41 | 148603 | 6250 | 58 | 4652 | 0 | 0 | 0 | logfile |
✔ | 5UYP | 8619 | 2022-05-24 | 2017-02-24 | 3.9 | 4.42 | 4.29 | 3.6 | 0.007 | 1.07 | 0.0 | 0.09 | 13.92 | 0.01 | 1.318 | 13.13 | 1.57 | 14.3 | 82.6 | 3.1 | -5.15 | 0.87 | 0.79 | 0.53 | 3.6 | 0.006 | 0.84 | 0.0 | 0.04 | 17.28 | 0.01 | 0.996 | 36.52 | 1.14 | 14.6 | 85.2 | 0.2 | -3.39 | 0.80 | 0.87 | 0.83 | 0.41 | 153780 | 6476 | 63 | 4811 | 1 | 0 | 0 | logfile |
✔ | 7CG4 | 30350 | 2022-05-13 | 2020-06-30 | 3.6 | 4.04 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.90 | 0.00 | 2.192 | 7.47 | 0.34 | 5.1 | 94.9 | 0.0 | -2.88 | 0.49 | 0.77 | 0.53 | 4.0 | 0.014 | 1.33 | 1.0 | 0.04 | 17.73 | 0.00 | 2.179 | 10.86 | 0.84 | 5.2 | 94.7 | 0.1 | 1.20 | 1.95 | 0.45 | 0.76 | 0.41 | 10943 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAW | 4785 | 2022-05-17 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.64 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | 3.8 | 0.009 | 1.10 | 0.0 | 0.05 | 18.64 | 0.01 | 1.676 | 16.49 | 0.40 | 11.5 | 88.5 | 0.0 | -3.15 | 3.99 | 0.58 | 0.62 | 0.41 | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |