Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MFF	23815	2023-04-20	2021-04-09	3.89	3.48	—	3.6	0.004	0.58	0.0	0.04	15.24	0.00	2.193	8.89	0.12	3.5	96.5	0.0	-0.09	0.69	0.71	1.30	3.6	0.003	0.67	0.0	0.04	17.04	0.00	2.185	12.84	0.47	4.7	95.3	0.0	0.86	1.43	0.70	0.72	0.48	8003	1000	6	0	2	0	0	logfile
✔	6ZiT	11229	2023-04-25	2020-06-26	3.49	3.68	4.20	3.5	0.005	0.74	0.0	0.04	15.19	0.01	1.968	23.60	0.00	10.6	89.4	0.0	-1.92	0.49	0.72	0.69	3.5	0.003	0.60	0.0	0.04	16.48	0.00	1.970	12.86	0.28	5.1	94.9	0.0	0.40	0.55	0.49	0.72	0.49	20646	1300	15	0	0	0	10446	logfile
✔	7F5V	31468	2023-04-25	2021-06-22	3.6	4.00	3.42	3.9	0.005	0.69	0.0	0.04	13.93	0.00	2.076	16.85	0.18	6.9	93.0	0.1	-4.69	0.75	0.80	1.04	3.9	0.005	0.72	0.0	0.04	15.92	0.00	2.060	17.19	0.27	7.0	93.0	0.0	-1.42	1.22	0.74	0.79	0.49	20912	2760	4	0	0	0	0	logfile
✔	7S37	24818	2023-04-21	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	12.76	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.70	0.0	0.04	16.14	0.01	2.116	15.43	0.54	3.3	96.7	0.0	0.14	1.48	0.77	0.67	0.49	9392	1033	2	46	0	0	0	logfile
✔	7K8V	22732	2023-04-27	2020-09-27	3.8	4.64	—	4.0	0.003	0.62	0.0	0.07	12.76	0.00	2.005	11.42	0.15	4.8	95.1	0.2	-2.90	0.81	0.74	0.42	4.1	0.003	0.66	0.0	0.04	14.56	0.00	2.141	15.09	0.26	5.3	94.6	0.1	-1.26	1.16	0.82	0.79	0.49	26248	3390	20	0	41	0	0	logfile
✔	7T5P	25706	2023-04-22	2021-12-13	3.4	3.23	3.35	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.30	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.003	0.60	0.0	0.04	17.97	0.00	1.945	16.04	0.52	5.4	94.6	0.0	1.62	0.38	0.77	0.74	0.50	13597	822	2	0	0	0	6866	logfile
✔	7B0U	11971	2023-04-19	2020-11-22	3.86	4.15	—	4.1	0.004	0.71	4.0	0.04	12.48	0.00	2.196	16.72	0.54	5.8	94.2	0.0	-0.21	0.66	0.74	0.48	4.1	0.004	0.70	0.0	0.04	14.96	0.00	2.096	18.38	0.41	6.8	93.2	0.0	-0.05	0.46	0.67	0.75	0.50	105492	13320	60	0	0	0	0	logfile
✔	6Q2S	20579	2023-04-22	2019-08-08	3.8	4.19	—	4.0	0.008	1.06	0.0	0.06	8.60	0.01	1.366	3.84	0.13	7.6	92.4	0.0	-4.58	0.64	0.51	0.55	4.0	0.003	0.81	0.0	0.04	14.37	0.00	2.027	16.30	0.46	6.4	93.6	0.0	-1.97	1.86	0.74	0.70	0.50	13726	1734	10	0	22	0	0	logfile
✔	5G2X	3331	2023-04-24	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	7XDT	33152	2023-04-21	2022-03-28	3.31	3.64	3.32	3.5	0.003	0.61	0.0	0.04	17.78	0.01	2.081	11.26	0.23	5.2	94.8	0.0	-0.03	0.72	0.65	0.76	3.5	0.003	0.62	0.0	0.04	18.54	0.00	2.052	12.79	0.54	5.4	94.6	0.0	0.47	0.55	0.76	0.70	0.50	41990	5310	10	0	0	0	0	logfile
✔	6NoG	0468	2023-04-25	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	7S1Y	24812	2023-04-20	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	6Qi8	4552	2023-04-23	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	7EGC	31112	2023-04-21	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.81	0.0	0.05	16.66	0.00	1.986	17.27	0.40	6.5	93.4	0.2	-0.77	1.26	0.51	0.32	0.51	113129	13879	63	142	18	0	0	logfile
✔	7WM4	32599	2023-04-27	2022-01-14	3.2	4.44	—	3.2	0.003	0.63	0.0	0.04	15.61	0.00	2.140	9.96	0.08	4.9	95.1	0.1	-1.73	0.86	0.70	0.72	3.2	0.004	0.73	0.0	0.04	17.59	0.00	2.100	23.51	0.20	9.7	90.1	0.2	-2.43	1.36	0.87	0.77	0.52	25848	2658	38	162	82	0	0	logfile
✔	6QB8	4489	2023-04-21	2018-12-20	3.97	4.19	—	2.3	0.005	0.96	0.0	0.06	15.67	0.01	2.238	11.60	0.76	8.2	91.8	0.0	-4.47	0.89	0.77	0.40	2.1	0.004	0.79	0.0	0.05	16.49	0.00	2.037	28.20	0.27	9.0	91.0	0.0	-1.64	1.54	0.89	0.80	0.52	60035	7870	18	0	2	0	0	logfile
✔	7WV9	32850	2023-04-21	2022-02-10	3.36	3.51	—	3.6	0.005	0.77	0.0	0.05	13.78	0.00	2.206	11.96	0.53	5.0	94.9	0.1	-0.80	0.57	0.67	1.09	3.6	0.002	0.60	0.0	0.04	15.49	0.00	2.234	12.64	0.32	4.6	95.4	0.0	-0.65	0.94	0.59	0.71	0.52	8848	1141	6	0	2	0	0	logfile
✔	6W8P	21577	2023-04-20	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	14.92	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	4.0	0.004	0.80	0.0	0.04	17.40	0.00	2.216	14.38	0.86	9.4	90.6	0.0	-0.22	2.10	0.57	0.78	0.53	6509	844	4	0	3	0	0	logfile
✔	7BW8	30230	2023-04-20	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.23	0.01	2.200	21.41	0.88	10.6	89.4	0.0	-3.01	2.07	0.68	0.63	0.53	6021	737	3	0	0	0	0	logfile
✔	6LAR	0862	2023-04-26	2019-11-13	3.7	4.08	—	4.0	0.007	0.99	0.0	0.05	15.43	0.01	1.858	20.21	5.47	13.2	86.4	0.4	-4.82	0.65	0.76	0.98	4.0	0.003	0.78	0.0	0.04	15.86	0.00	2.160	12.49	0.43	8.6	91.4	0.0	-0.58	1.21	0.64	0.76	0.54	22448	3020	10	0	0	0	0	logfile

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