Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GXM	0080	2022-07-10	2018-06-27	3.8	4.73	—	4.3	0.004	0.81	0.0	0.04	13.85	0.01	1.322	6.12	0.20	8.4	91.2	0.4	-4.08	0.85	0.83	0.31	4.3	0.005	0.75	1.0	0.04	15.88	0.01	1.501	29.85	1.15	10.6	89.2	0.2	-1.99	1.75	0.87	0.87	0.38	151394	6643	59	4639	1	0	0	logfile
✔	7MVU	24056	2022-07-05	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.002	0.58	0.0	0.03	11.75	0.00	1.907	11.81	0.07	3.4	96.6	0.0	2.54	2.06	0.88	0.82	0.38	25645	1604	2	0	0	0	12841	logfile
✔	7F5V	31468	2022-07-04	2021-06-22	3.6	4.00	3.42	3.9	0.005	0.69	0.0	0.04	13.93	0.00	2.076	17.04	0.18	6.9	93.0	0.1	-4.69	0.75	0.80	1.04	3.9	0.005	0.74	0.0	0.04	15.83	0.01	2.053	17.23	0.36	6.3	93.7	0.0	-1.19	0.64	0.74	0.79	0.38	20912	2760	4	0	0	0	0	logfile
✔	6KKR	0701	2022-07-03	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.99	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.77	0.0	0.04	13.11	0.00	2.105	13.63	2.15	4.1	95.9	0.0	0.35	1.64	0.12	0.11	0.38	8416	1074	4	0	24	0	0	logfile
✔	7KNi	22950	2022-07-07	2020-11-04	3.91	4.86	4.13	3.9	0.003	0.61	0.0	0.05	14.27	0.01	2.045	4.31	0.07	4.4	95.6	0.0	-1.75	0.77	0.56	0.26	4.0	0.005	0.74	0.0	0.05	15.94	0.01	2.046	22.90	0.26	7.2	92.8	0.0	-1.12	1.42	0.84	0.74	0.38	39574	4878	18	0	68	0	0	logfile
✔	7RTU	24689	2022-07-03	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.20	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.71	0.38	5962	754	6	0	12	0	0	logfile
✔	6TB4	10438	2022-07-07	2019-10-31	3.8	4.42	3.85	3.8	0.008	1.08	1.0	0.06	15.27	0.01	2.044	11.30	2.05	9.8	89.5	0.8	-5.38	0.70	0.55	0.41	3.8	0.006	0.93	1.0	0.04	16.11	0.00	1.716	14.32	0.10	7.6	92.3	0.1	-0.37	0.96	0.79	0.74	0.39	40740	5275	13	0	76	0	0	logfile
✔	6PMi	20394	2022-07-03	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.38	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.008	0.93	1.0	0.04	17.34	0.01	1.541	26.76	0.37	11.1	88.8	0.2	-3.01	1.26	0.86	0.77	0.40	57985	3453	10	110	4	0	28610	logfile
✔	7WVP	32856	2022-07-06	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.40	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.009	1.05	2.0	0.05	16.00	0.01	1.930	19.91	0.58	4.9	95.1	0.0	-1.52	1.53	0.75	0.67	0.40	29601	3750	4	0	0	0	0	logfile
✔	7CHH	30374	2022-07-06	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.17	0.0	0.05	15.96	0.01	1.918	20.25	0.00	6.6	93.4	0.0	-1.77	1.33	0.21	0.12	0.40	29029	3704	17	0	41	0	0	logfile
✔	6SXA	10337	2022-07-03	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.33	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.82	0.0	0.04	15.05	0.00	2.275	11.82	0.14	5.7	94.2	0.1	-0.22	1.72	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	6RAW	4785	2022-07-07	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.64	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.009	1.10	0.0	0.05	18.64	0.01	1.676	16.49	0.40	11.5	88.5	0.0	-3.15	3.99	0.58	0.62	0.41	39710	4877	18	39	6	0	0	logfile
✔	5KPS	8279	2022-07-09	2016-07-05	3.9	5.38	4.05	3.9	0.008	1.11	0.0	0.08	13.49	0.01	1.923	27.39	0.32	12.5	82.8	4.6	-4.23	0.90	0.78	0.50	3.9	0.008	0.83	0.0	0.04	16.01	0.01	1.880	39.96	0.78	10.8	88.4	0.8	-2.23	1.95	0.95	0.90	0.41	149128	6091	58	4734	0	0	0	logfile
✔	7CG4	30350	2022-07-03	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.47	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.014	1.33	1.0	0.04	17.73	0.00	2.179	10.86	0.84	5.2	94.7	0.1	1.20	1.95	0.45	0.76	0.41	10943	1419	11	0	0	0	0	logfile
✔	7JT3	22472	2022-07-09	2020-08-17	3.7	4.04	4.23	3.8	0.006	0.99	3.0	0.08	13.56	0.01	2.077	12.80	1.24	12.9	85.4	1.7	-5.28	0.83	0.78	0.65	3.8	0.005	0.78	0.0	0.04	16.88	0.01	2.013	30.48	1.04	12.5	87.4	0.1	-3.21	0.88	0.85	0.80	0.41	148603	6250	58	4652	0	0	0	logfile
✔	6W6K	21558	2022-07-07	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.81	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	7oHP	12904	2022-07-07	2021-05-11	3.9	5.25	4.02	3.0	0.005	0.54	0.0	0.03	16.61	0.00	1.733	6.26	1.01	4.3	95.5	0.2	1.17	0.80	0.64	0.37	3.1	0.005	0.69	0.0	0.04	18.31	0.00	1.793	25.51	0.50	9.2	90.8	0.0	-1.30	1.74	0.83	0.74	0.42	143939	5290	35	1781	1	0	63394	logfile
✔	6UKT	20812	2022-07-03	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.74	0.0	0.04	17.71	0.01	2.158	14.14	0.46	10.6	89.4	0.1	-2.47	0.57	0.90	0.84	0.42	8979	1204	6	0	0	0	0	logfile
✔	6T59	10380	2022-07-07	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.88	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.006	1.03	4.0	0.05	19.37	0.01	0.984	28.80	0.63	9.2	90.7	0.1	-2.66	1.99	0.57	0.55	0.42	143047	7383	64	3890	225	0	0	logfile
✔	7EGC	31112	2022-07-03	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	24.43	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.007	0.98	3.0	0.05	16.83	0.01	1.653	22.01	0.21	6.5	93.2	0.3	-1.36	1.21	0.51	0.31	0.43	113129	13879	63	142	18	0	0	logfile

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