Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oW1	17227	2023-11-19	2023-04-26	3.7	5.06	5.11	3.9	0.003	0.65	0.0	0.04	18.31	0.00	1.800	10.59	1.37	3.0	97.0	0.0	0.32	0.75	0.49	0.28	3.9	0.003	0.69	0.0	0.04	19.32	0.00	2.102	15.60	0.10	3.1	96.9	0.0	1.03	4.39	0.87	0.73	0.35	78671	8932	42	306	0	0	0	logfile
✔	6K9F	9948	2023-11-16	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.22	0.0	0.05	17.69	0.00	2.013	28.27	0.53	1.4	98.6	0.0	-0.68	3.70	0.67	0.84	0.35	8484	1044	12	0	0	0	0	logfile
✔	5L4K	4002	2023-11-19	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	7FG3	31577	2023-11-14	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	7CHH	30374	2023-11-20	2020-07-05	3.49	2.44	—	20.0	0.007	1.10	0.0	0.06	15.16	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.2	0.012	1.23	0.0	0.06	16.28	0.01	1.926	22.20	0.55	8.8	91.2	0.0	-2.20	1.50	0.21	0.15	0.35	29029	3704	17	0	41	0	0	logfile
✔	7YoX	33989	2023-11-16	2022-08-02	3.95	4.33	4.09	4.1	0.006	1.31	8.0	0.10	27.06	0.01	0.786	33.58	46.70	1.0	98.8	0.2	2.84	0.82	0.70	0.48	4.1	0.003	0.80	0.0	0.05	18.73	0.00	2.122	24.63	0.44	2.8	97.2	0.0	0.19	1.10	0.84	0.77	0.35	13878	1749	6	0	0	0	0	logfile
✔	7MVU	24056	2023-11-19	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	6NZo	0559	2023-11-16	2019-02-14	3.8	4.12	—	4.0	0.007	0.93	0.0	0.06	27.12	0.01	2.313	3.45	0.12	4.8	95.1	0.1	-1.08	0.78	0.76	1.27	4.0	0.003	0.65	0.0	0.04	27.91	0.00	2.191	15.39	0.24	5.1	94.9	0.0	0.92	1.61	0.78	0.76	0.36	13738	985	11	290	3	0	0	logfile
✔	8HSJ	34999	2023-11-17	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.004	0.81	0.0	0.04	16.44	0.01	1.074	23.89	0.99	3.5	96.2	0.3	-0.24	1.32	0.85	0.73	0.36	17244	2166	12	0	18	0	0	logfile
✔	8H9R	34578	2023-11-13	2022-10-25	3.97	4.28	4.04	4.0	0.006	0.79	0.0	0.05	15.25	0.00	2.244	16.26	0.00	6.1	93.9	0.0	-1.99	0.38	0.80	0.71	4.0	0.003	0.72	0.0	0.04	17.99	0.00	2.273	14.32	1.13	4.1	95.9	0.0	2.13	1.32	0.38	0.79	0.36	3381	421	3	0	0	0	0	logfile
✔	7Q4W	13819	2023-11-17	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.004	0.73	0.0	0.05	15.20	0.00	2.119	22.47	0.67	4.1	95.9	0.0	-0.03	0.63	0.92	0.84	0.36	18050	2364	12	0	22	0	0	logfile
✔	7VZ3	32219	2023-11-17	2021-11-15	2.46	2.36	2.43	19.0	0.009	1.08	2.0	0.07	12.80	0.01	2.203	4.37	0.26	5.4	94.5	0.1	-1.44	0.12	0.02	0.32	2.2	0.003	0.68	0.0	0.05	14.55	0.00	2.060	13.70	1.26	4.5	95.4	0.1	-1.68	1.77	0.22	0.16	0.36	17415	2256	3	0	0	0	0	logfile
✔	8FiX	29212	2023-11-19	2022-12-17	3.9	4.15	3.95	3.9	0.003	0.69	0.0	0.05	14.21	0.00	1.933	14.02	0.07	12.8	87.1	0.2	-2.81	0.79	0.65	0.34	3.9	0.003	0.68	0.0	0.04	15.99	0.00	2.027	12.63	0.37	4.8	95.1	0.0	-0.70	2.14	0.81	0.70	0.36	25943	3185	9	49	3	0	0	logfile
✔	3JAD	6344	2023-11-15	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✔	7o6B	12737	2023-11-16	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	8GWB	34308	2023-11-18	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.73	0.0	0.04	16.78	0.01	2.097	16.95	2.56	7.1	92.8	0.1	-1.58	1.60	0.35	0.15	0.37	21879	2655	16	54	10	7	0	logfile
✔	7TR8	26082	2023-11-21	2022-01-28	3.6	4.39	—	4.1	0.002	0.54	0.0	0.04	14.37	0.00	2.037	11.91	0.03	7.5	92.2	0.4	-1.00	0.75	0.46	-0.02	4.1	0.003	0.85	0.0	0.05	16.82	0.01	2.069	23.21	0.26	7.9	91.8	0.3	-1.86	2.22	0.83	0.71	0.38	33581	4192	18	45	2	0	0	logfile
✔	7RTU	24689	2023-11-13	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	14.31	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.56	0.0	0.04	16.58	0.00	2.211	7.03	0.31	2.4	97.6	0.0	4.14	0.30	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	8GAP	29903	2023-11-17	2023-02-23	3.8	4.94	3.68	3.3	0.002	0.58	0.0	0.04	17.67	0.00	2.199	12.59	0.21	3.7	96.3	0.0	1.14	0.92	0.84	0.38	3.3	0.003	0.59	0.0	0.04	18.21	0.00	2.147	15.52	0.05	4.2	95.7	0.1	1.07	1.45	0.92	0.85	0.39	20630	2032	9	173	1	0	0	logfile
✔	7SoY	25363	2023-11-15	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	12.96	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.003	0.64	0.0	0.04	14.33	0.00	2.076	14.51	0.22	2.4	97.6	0.0	1.48	0.49	0.91	0.85	0.39	12180	1529	4	0	0	0	0	logfile

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