Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PMi	20394	2023-11-14	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.005	0.76	0.0	0.04	17.30	0.01	1.808	26.87	0.58	10.9	88.9	0.1	-2.64	1.01	0.86	0.78	0.40	57985	3453	10	110	4	0	28610	logfile
✔	6X2N	22012	2023-11-22	2020-05-20	3.9	4.07	—	3.9	0.009	1.21	1.0	0.07	17.28	0.01	2.024	10.33	0.28	8.2	91.6	0.3	-2.89	0.76	0.77	0.56	3.9	0.003	0.71	0.0	0.04	18.25	0.00	2.007	15.35	0.30	7.0	93.0	0.0	-1.11	1.89	0.76	0.77	0.40	36079	4316	11	113	4	0	0	logfile
✔	6W62	21551	2023-11-14	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.004	0.80	0.0	0.05	16.84	0.00	2.079	21.09	0.89	10.9	89.1	0.0	-1.93	1.22	0.72	0.69	0.40	7387	910	2	24	0	0	0	logfile
✔	6SXA	10337	2023-11-14	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.04	0.00	2.240	11.90	0.00	6.0	93.9	0.1	-0.30	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7WVP	32856	2023-11-20	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.004	0.82	1.0	0.05	15.92	0.00	2.060	17.53	0.61	5.2	94.8	0.0	-1.57	1.54	0.75	0.67	0.41	29601	3750	4	0	0	0	0	logfile
✔	7M18	23615	2023-11-13	2021-03-12	3.38	4.09	—	4.1	0.007	1.33	0.0	0.05	19.80	0.01	1.728	23.77	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.003	0.79	0.0	0.04	19.96	0.01	2.078	17.84	0.33	8.5	91.3	0.1	-1.88	0.55	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	7CG4	30350	2023-11-15	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.47	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.004	0.88	0.0	0.04	17.36	0.00	2.148	10.42	0.51	5.3	94.7	0.1	1.07	1.96	0.45	0.76	0.41	10943	1419	11	0	0	0	0	logfile
✔	8GRQ	34212	2023-11-16	2022-09-02	3.87	4.28	3.85	3.8	0.004	0.67	0.0	0.04	25.51	0.00	2.125	14.63	0.22	3.2	96.8	0.0	0.64	0.87	0.82	0.93	3.8	0.004	0.85	0.0	0.04	27.43	0.01	2.037	22.18	1.10	5.7	94.2	0.1	0.04	0.73	0.87	0.83	0.42	14563	1084	15	294	4	0	0	logfile
✔	7R03	14218	2023-11-21	2022-02-01	3.6	4.69	—	3.8	0.006	1.15	1.0	0.06	13.88	0.01	2.224	5.84	0.00	4.2	95.8	0.0	-2.18	0.86	0.76	0.62	3.8	0.003	0.70	0.0	0.04	15.11	0.00	2.112	13.25	0.05	4.3	95.7	0.0	1.22	0.47	0.86	0.77	0.42	35621	4487	2	0	0	0	0	logfile
✔	6NoG	0468	2023-11-17	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.003	0.63	0.0	0.04	26.65	0.00	2.185	10.87	0.21	2.5	97.5	0.0	1.52	1.77	0.86	0.85	0.43	14929	1124	12	292	0	0	0	logfile
✔	8GQ6	34199	2023-11-18	2022-08-29	3.96	3.05	3.96	3.1	0.002	0.53	0.0	0.04	13.63	0.00	2.109	11.15	0.32	6.9	93.0	0.1	-0.79	0.66	0.63	0.59	3.1	0.004	0.98	0.0	0.05	17.22	0.01	1.900	24.16	0.65	10.0	89.8	0.2	-1.63	0.96	0.67	0.66	0.44	22293	2742	8	0	6	0	0	logfile
✔	7LC9	23270	2023-11-13	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.003	0.67	0.0	0.05	16.66	0.00	2.060	26.52	1.18	10.8	89.2	0.0	-3.54	0.68	0.68	0.78	0.44	3497	525	12	0	0	0	0	logfile
✔	8EUJ	28614	2023-11-15	2022-10-18	3.36	4.07	3.84	3.7	0.006	1.22	0.0	0.06	30.89	0.01	2.233	5.43	0.00	2.6	97.4	0.0	-2.60	0.71	0.76	0.82	3.7	0.004	0.81	0.0	0.04	30.30	0.01	2.070	18.77	0.81	3.3	96.7	0.0	0.39	1.30	0.71	0.78	0.44	11913	747	10	294	0	0	0	logfile
✔	8oMA	16972	2023-11-15	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	2.0	0.003	0.78	0.0	0.04	19.93	0.00	1.955	23.58	0.59	6.2	93.8	0.0	-0.55	1.94	0.63	0.60	0.44	11379	1337	6	34	3	0	0	logfile
✔	6oT0	20190	2023-11-15	2019-05-02	3.84	4.10	—	4.4	0.009	1.13	0.0	0.07	14.50	0.01	2.191	3.20	0.79	6.3	93.7	0.0	-3.15	0.53	0.75	0.80	4.4	0.003	0.78	0.0	0.04	16.41	0.00	2.100	17.65	0.53	5.3	94.7	0.0	-1.29	1.37	0.55	0.77	0.44	10572	1345	7	0	1	0	0	logfile
✔	6XQB	22288	2023-11-16	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	13.97	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.9	0.003	0.69	0.0	0.04	14.30	0.00	1.956	20.89	0.57	9.1	90.9	0.0	-2.52	0.95	0.76	0.59	0.45	16323	1008	7	15	3	0	7987	logfile
✔	7CR7	30448	2023-11-16	2020-08-12	3.7	3.92	—	3.8	0.008	0.79	0.0	0.04	14.63	0.00	1.825	92.66	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.90	0.0	0.04	17.53	0.00	2.011	22.09	0.59	4.2	95.8	0.0	-0.01	1.52	0.63	0.70	0.45	16136	1988	12	0	4	0	0	logfile
✔	7P1i	13161	2023-11-14	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.3	0.004	1.18	1.0	0.05	14.98	0.00	2.140	21.37	0.14	6.1	93.9	0.0	0.34	0.96	0.57	0.72	0.46	6644	884	2	0	0	0	0	logfile
✔	7WDF	32437	2023-11-21	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.49	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.005	0.84	0.0	0.05	14.26	0.01	2.096	22.48	0.45	5.3	94.7	0.0	-1.16	1.62	0.76	0.72	0.46	31998	4101	7	0	0	0	0	logfile
✔	7M20	23627	2023-11-14	2021-03-15	3.84	4.44	—	4.4	0.009	1.56	0.0	0.07	20.41	0.01	2.148	30.79	2.84	11.1	88.6	0.3	-2.43	0.74	0.72	0.65	4.4	0.003	0.82	0.0	0.04	19.74	0.00	2.103	17.82	0.49	6.5	93.5	0.0	-1.46	0.63	0.74	0.72	0.46	60705	7785	36	9	18	0	0	logfile

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