Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5XMi	6733	2023-04-23	2017-05-15	3.9	3.93	—	3.9	0.009	1.29	3.0	0.07	13.03	0.01	2.342	1.57	1.10	8.9	88.6	2.5	-3.05	0.61	0.63	0.60	3.9	0.003	0.81	0.0	0.04	16.76	0.01	2.102	16.53	0.74	8.3	91.3	0.4	-0.91	1.24	0.64	0.66	0.54	14969	1914	11	0	5	0	0	logfile
✔	7W6P	32331	2023-04-20	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	8EXR	28660	2023-04-20	2022-10-25	3.8	4.08	3.96	4.1	0.026	1.94	0.0	0.11	11.54	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.71	0.0	0.04	15.99	0.01	2.122	14.02	1.06	4.5	95.5	0.0	-0.80	1.25	0.54	0.67	0.54	5111	590	5	0	7	0	0	logfile
✔	6WFQ	21652	2023-04-20	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.003	0.92	0.0	0.04	19.12	0.00	2.154	16.10	0.00	6.3	93.7	0.0	-0.17	0.73	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	8EFD	28080	2023-04-20	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.61	0.0	0.04	15.94	0.00	2.165	13.04	0.26	4.5	95.5	0.0	0.71	0.55	0.88	0.80	0.54	7107	886	2	0	0	0	0	logfile
✔	7S8U	24922	2023-04-20	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.32	0.01	2.069	18.36	0.88	9.6	89.9	0.5	-0.50	1.41	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	7RAK	24363	2023-04-21	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	6.78	0.00	2.283	4.06	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.002	0.61	0.0	0.04	12.16	0.00	2.263	7.67	0.25	5.0	94.8	0.1	-1.25	1.31	0.71	0.75	0.55	61296	8112	32	0	16	0	0	logfile
✔	7RAU	24386	2023-04-25	2021-07-02	3.99	4.71	—	4.5	0.009	1.26	0.0	0.05	12.56	0.01	2.299	4.39	1.11	6.3	93.5	0.2	-4.28	0.63	0.79	0.68	4.6	0.003	0.89	0.0	0.04	15.52	0.00	2.111	15.57	0.51	5.9	94.1	0.0	-0.05	1.84	0.63	0.79	0.55	20000	2440	8	0	8	0	0	logfile
✔	8DFo	27409	2023-04-26	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	17.81	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.75	0.0	0.04	17.28	0.01	2.086	17.82	0.12	4.2	95.8	0.0	-0.71	1.86	0.44	0.39	0.56	23861	2912	13	45	0	0	0	logfile
✔	8D43	27173	2023-04-20	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	6NZo	0559	2023-04-22	2019-02-14	3.8	4.12	—	4.0	0.007	0.93	0.0	0.06	27.12	0.01	2.313	3.45	0.12	4.8	95.1	0.1	-1.08	0.78	0.76	1.27	4.0	0.004	0.65	0.0	0.04	27.94	0.00	2.132	15.87	0.12	5.2	94.8	0.0	0.96	1.62	0.79	0.77	0.56	13738	985	11	290	3	0	0	logfile
✔	8CXo	27062	2023-04-20	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.02	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.78	0.0	0.04	15.98	0.00	2.193	15.37	0.00	4.0	96.0	0.0	1.05	2.10	0.62	0.80	0.56	4392	551	1	0	1	0	0	logfile
✔	7DGZ	30676	2023-04-21	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	6UZ3	20951	2023-04-21	2019-11-14	3.5	3.88	—	3.8	0.022	1.33	3.0	0.15	17.37	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.003	0.83	0.0	0.04	17.06	0.00	2.155	17.35	0.84	6.8	93.1	0.2	-0.13	1.28	0.41	0.69	0.56	9446	1126	5	0	25	0	0	logfile
✔	8GWG	34312	2023-04-26	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.85	0.0	0.04	17.35	0.01	2.073	20.41	0.70	8.6	91.2	0.2	-2.15	1.82	0.77	0.63	0.57	21955	2668	13	52	9	1	0	logfile
✔	7VTQ	32120	2023-04-28	2021-10-30	3.55	4.59	—	3.2	0.004	0.68	0.0	0.04	15.12	0.00	2.136	14.14	0.05	5.6	94.4	0.0	-0.05	0.74	0.61	0.73	3.3	0.002	0.70	0.0	0.04	15.85	0.00	2.112	13.74	0.12	3.3	96.7	0.0	0.45	0.53	0.87	0.80	0.58	76572	9468	24	0	24	0	0	logfile
✔	3JBT	6480	2023-04-26	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.66	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.003	0.78	0.0	0.04	16.97	0.00	1.830	16.15	0.59	7.8	91.5	0.7	-1.46	1.75	0.70	0.68	0.58	70252	8736	28	0	21	0	0	logfile
✔	7RP6	24613	2023-04-20	2021-08-03	3.78	3.85	—	3.8	0.006	0.96	0.0	0.06	14.85	0.01	2.334	5.72	0.59	5.7	94.3	0.0	-4.72	0.69	0.82	1.37	3.8	0.003	0.72	0.0	0.04	16.49	0.00	2.141	11.79	0.30	4.7	95.3	0.0	-0.09	1.18	0.66	0.82	0.58	6753	900	2	0	0	0	0	logfile
✔	7WX4	32876	2023-04-19	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.120	5.71	0.00	6.0	94.0	0.0	-0.14	0.45	0.43	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	7E7S	31003	2023-04-20	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.3	0.002	0.53	0.0	0.04	15.91	0.00	2.219	8.70	0.00	3.3	96.7	0.0	1.42	1.29	0.66	0.82	0.60	7884	1020	1	0	2	0	0	logfile

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