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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5XMi | 6733 | 2023-04-23 | 2017-05-15 | 3.9 | 3.93 | — | 3.9 | 0.009 | 1.29 | 3.0 | 0.07 | 13.03 | 0.01 | 2.342 | 1.57 | 1.10 | 8.9 | 88.6 | 2.5 | -3.05 | 0.61 | 0.63 | 0.60 | 3.9 | 0.003 | 0.81 | 0.0 | 0.04 | 16.76 | 0.01 | 2.102 | 16.53 | 0.74 | 8.3 | 91.3 | 0.4 | -0.91 | 1.24 | 0.64 | 0.66 | 0.54 | 14969 | 1914 | 11 | 0 | 5 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2023-04-20 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.70 | 0.0 | 0.04 | 13.78 | 0.00 | 2.196 | 14.60 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 8.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.37 | 0.00 | 2.199 | 14.66 | 0.44 | 5.7 | 94.3 | 0.0 | -0.83 | 1.94 | 0.31 | 0.25 | 0.54 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EXR | 28660 | 2023-04-20 | 2022-10-25 | 3.8 | 4.08 | 3.96 | 4.1 | 0.026 | 1.94 | 0.0 | 0.11 | 11.54 | 0.01 | 2.016 | 3.98 | 0.00 | 2.8 | 96.9 | 0.3 | -0.66 | 0.58 | 0.68 | 1.29 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 15.99 | 0.01 | 2.122 | 14.02 | 1.06 | 4.5 | 95.5 | 0.0 | -0.80 | 1.25 | 0.54 | 0.67 | 0.54 | 5111 | 590 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 6WFQ | 21652 | 2023-04-20 | 2020-04-03 | 3.9 | 4.88 | 3.77 | 3.9 | 0.002 | 0.49 | 0.0 | 0.03 | 16.66 | 0.00 | 2.265 | 8.11 | 0.80 | 4.3 | 95.7 | 0.0 | -2.49 | 0.84 | 0.78 | 0.76 | 3.8 | 0.003 | 0.92 | 0.0 | 0.04 | 19.12 | 0.00 | 2.154 | 16.10 | 0.00 | 6.3 | 93.7 | 0.0 | -0.17 | 0.73 | 0.85 | 0.80 | 0.54 | 4164 | 447 | 4 | 30 | 0 | 0 | 0 | logfile |
✔ | 8EFD | 28080 | 2023-04-20 | 2022-09-08 | 3.8 | 4.67 | 3.83 | 3.9 | 0.002 | 0.49 | 0.0 | 0.04 | 14.10 | 0.00 | 2.048 | 8.46 | 0.13 | 3.8 | 96.2 | 0.0 | 0.81 | 0.88 | 0.79 | 0.38 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 15.94 | 0.00 | 2.165 | 13.04 | 0.26 | 4.5 | 95.5 | 0.0 | 0.71 | 0.55 | 0.88 | 0.80 | 0.54 | 7107 | 886 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2023-04-20 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.069 | 18.36 | 0.88 | 9.6 | 89.9 | 0.5 | -0.50 | 1.41 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RAK | 24363 | 2023-04-21 | 2021-07-01 | 3.9 | 4.13 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 6.78 | 0.00 | 2.283 | 4.06 | 0.00 | 14.0 | 85.0 | 1.0 | -3.87 | 0.62 | 0.61 | 0.78 | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 12.16 | 0.00 | 2.263 | 7.67 | 0.25 | 5.0 | 94.8 | 0.1 | -1.25 | 1.31 | 0.71 | 0.75 | 0.55 | 61296 | 8112 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 7RAU | 24386 | 2023-04-25 | 2021-07-02 | 3.99 | 4.71 | — | 4.5 | 0.009 | 1.26 | 0.0 | 0.05 | 12.56 | 0.01 | 2.299 | 4.39 | 1.11 | 6.3 | 93.5 | 0.2 | -4.28 | 0.63 | 0.79 | 0.68 | 4.6 | 0.003 | 0.89 | 0.0 | 0.04 | 15.52 | 0.00 | 2.111 | 15.57 | 0.51 | 5.9 | 94.1 | 0.0 | -0.05 | 1.84 | 0.63 | 0.79 | 0.55 | 20000 | 2440 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8DFo | 27409 | 2023-04-26 | 2022-06-22 | 3.1 | 3.40 | 3.29 | 7.2 | 0.022 | 1.64 | 93.0 | 0.16 | 17.81 | 0.01 | 1.724 | 6.88 | 0.57 | 4.8 | 95.2 | 0.0 | -0.44 | 0.27 | 0.07 | 0.22 | 3.4 | 0.003 | 0.75 | 0.0 | 0.04 | 17.28 | 0.01 | 2.086 | 17.82 | 0.12 | 4.2 | 95.8 | 0.0 | -0.71 | 1.86 | 0.44 | 0.39 | 0.56 | 23861 | 2912 | 13 | 45 | 0 | 0 | 0 | logfile |
✔ | 8D43 | 27173 | 2023-04-20 | 2022-06-01 | 2.88 | 3.12 | 2.94 | 5.9 | 0.004 | 0.84 | 1.0 | 0.06 | 18.27 | 0.01 | 1.371 | 8.43 | 5.48 | 6.5 | 93.5 | 0.0 | -1.48 | 0.17 | -0.02 | 0.37 | 3.2 | 0.004 | 0.84 | 0.0 | 0.05 | 18.51 | 0.01 | 2.058 | 18.77 | 3.10 | 5.2 | 94.7 | 0.1 | -1.45 | 2.71 | 0.41 | 0.35 | 0.56 | 7763 | 962 | 5 | 0 | 6 | 1 | 0 | logfile |
✔ | 6NZo | 0559 | 2023-04-22 | 2019-02-14 | 3.8 | 4.12 | — | 4.0 | 0.007 | 0.93 | 0.0 | 0.06 | 27.12 | 0.01 | 2.313 | 3.45 | 0.12 | 4.8 | 95.1 | 0.1 | -1.08 | 0.78 | 0.76 | 1.27 | 4.0 | 0.004 | 0.65 | 0.0 | 0.04 | 27.94 | 0.00 | 2.132 | 15.87 | 0.12 | 5.2 | 94.8 | 0.0 | 0.96 | 1.62 | 0.79 | 0.77 | 0.56 | 13738 | 985 | 11 | 290 | 3 | 0 | 0 | logfile |
✔ | 8CXo | 27062 | 2023-04-20 | 2022-05-22 | 3.7 | 4.10 | 3.65 | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 10.02 | 0.00 | 2.329 | 2.39 | 0.00 | 2.7 | 96.9 | 0.4 | 1.90 | 0.60 | 0.77 | 1.79 | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 15.98 | 0.00 | 2.193 | 15.37 | 0.00 | 4.0 | 96.0 | 0.0 | 1.05 | 2.10 | 0.62 | 0.80 | 0.56 | 4392 | 551 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DGZ | 30676 | 2023-04-21 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.43 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 14.39 | 0.01 | 2.084 | 11.40 | 0.37 | 14.7 | 85.1 | 0.3 | -3.35 | 1.61 | 0.82 | 0.73 | 0.56 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 6UZ3 | 20951 | 2023-04-21 | 2019-11-14 | 3.5 | 3.88 | — | 3.8 | 0.022 | 1.33 | 3.0 | 0.15 | 17.37 | 0.01 | 1.260 | 32.37 | 1.05 | 11.2 | 88.5 | 0.4 | -3.89 | 0.42 | 0.70 | 1.32 | 3.8 | 0.003 | 0.83 | 0.0 | 0.04 | 17.06 | 0.00 | 2.155 | 17.35 | 0.84 | 6.8 | 93.1 | 0.2 | -0.13 | 1.28 | 0.41 | 0.69 | 0.56 | 9446 | 1126 | 5 | 0 | 25 | 0 | 0 | logfile |
✔ | 8GWG | 34312 | 2023-04-26 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 17.82 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.5 | 0.004 | 0.85 | 0.0 | 0.04 | 17.35 | 0.01 | 2.073 | 20.41 | 0.70 | 8.6 | 91.2 | 0.2 | -2.15 | 1.82 | 0.77 | 0.63 | 0.57 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 7VTQ | 32120 | 2023-04-28 | 2021-10-30 | 3.55 | 4.59 | — | 3.2 | 0.004 | 0.68 | 0.0 | 0.04 | 15.12 | 0.00 | 2.136 | 14.14 | 0.05 | 5.6 | 94.4 | 0.0 | -0.05 | 0.74 | 0.61 | 0.73 | 3.3 | 0.002 | 0.70 | 0.0 | 0.04 | 15.85 | 0.00 | 2.112 | 13.74 | 0.12 | 3.3 | 96.7 | 0.0 | 0.45 | 0.53 | 0.87 | 0.80 | 0.58 | 76572 | 9468 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 3JBT | 6480 | 2023-04-26 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.56 | 0.01 | 1.919 | 70.66 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.003 | 0.78 | 0.0 | 0.04 | 16.97 | 0.00 | 1.830 | 16.15 | 0.59 | 7.8 | 91.5 | 0.7 | -1.46 | 1.75 | 0.70 | 0.68 | 0.58 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 7RP6 | 24613 | 2023-04-20 | 2021-08-03 | 3.78 | 3.85 | — | 3.8 | 0.006 | 0.96 | 0.0 | 0.06 | 14.85 | 0.01 | 2.334 | 5.72 | 0.59 | 5.7 | 94.3 | 0.0 | -4.72 | 0.69 | 0.82 | 1.37 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.49 | 0.00 | 2.141 | 11.79 | 0.30 | 4.7 | 95.3 | 0.0 | -0.09 | 1.18 | 0.66 | 0.82 | 0.58 | 6753 | 900 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WX4 | 32876 | 2023-04-19 | 2022-02-14 | 3.4 | 3.64 | 2.77 | 3.7 | 0.006 | 0.59 | 0.0 | 0.04 | 16.46 | 0.00 | 2.219 | 8.20 | 6.39 | 7.2 | 92.8 | 0.0 | -3.40 | 0.43 | 0.82 | 0.72 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 17.71 | 0.00 | 2.120 | 5.71 | 0.00 | 6.0 | 94.0 | 0.0 | -0.14 | 0.45 | 0.43 | 0.82 | 0.59 | 1992 | 260 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E7S | 31003 | 2023-04-20 | 2021-02-27 | 3.3 | 3.32 | 3.27 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.41 | 0.00 | 2.166 | 8.26 | 0.00 | 2.6 | 97.4 | 0.0 | -0.13 | 0.68 | 0.82 | 1.44 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 15.91 | 0.00 | 2.219 | 8.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.42 | 1.29 | 0.66 | 0.82 | 0.60 | 7884 | 1020 | 1 | 0 | 2 | 0 | 0 | logfile |