Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ET1	31294	2023-02-23	2021-05-12	2.6	3.09	2.69	3.0	0.007	1.25	0.0	0.05	17.10	0.01	1.936	9.51	0.19	2.7	97.3	0.0	0.57	0.76	0.87	2.95	3.0	0.003	0.78	0.0	0.04	17.09	0.00	1.557	6.42	1.32	1.8	98.2	0.0	1.34	1.02	0.73	0.90	3.01	10015	1249	5	0	14	1	0	logfile
✔	6X5i	22051	2023-02-18	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	210.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	210.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	6BWi	7299	2023-02-24	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.08	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.98	126.0	0.27	21.71	0.03	1.598	112.51	5.51	44.2	49.1	6.7	-8.56	2.58	0.80	0.86	2.00	23491	2484	8	0	813	0	0	logfile
✔	6CNo	7539	2023-02-21	2018-03-08	4.7	4.91	—	4.8	0.006	1.03	0.0	0.05	9.24	0.01	1.936	5.57	0.26	3.5	96.5	0.0	-2.70	0.64	0.79	—	4.8	0.033	0.98	0.0	0.05	13.13	0.01	1.609	36.78	0.00	3.0	97.0	0.0	0.18	1.30	0.64	0.79	—	15428	2024	12	0	12	0	0	logfile
✔	7LQH	23486	2023-02-20	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.25	190.0	0.31	24.04	0.02	1.610	112.99	4.28	40.1	59.5	0.3	-8.01	3.50	0.66	0.87	3.32	12096	1152	144	0	0	0	0	logfile
✔	7UUR	26801	2023-02-21	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	4.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	2.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	6T24	10366	2023-02-21	2019-10-07	3.7	3.44	3.63	3.6	0.049	3.18	0.0	0.23	14.36	0.01	2.104	2.74	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	3.5	0.003	1.54	0.0	0.04	17.29	0.00	1.619	16.22	0.32	1.4	98.6	0.0	0.89	1.42	0.69	0.82	2.30	14910	1855	10	0	20	0	0	logfile
✔	6DVZ	8921	2023-02-23	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.81	0.0	0.04	13.96	0.00	1.621	12.77	0.00	13.5	86.1	0.4	-2.24	0.88	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	8DZH	27798	2023-02-28	2022-08-07	3.2	4.76	3.29	2.8	0.010	0.87	1.0	0.06	18.79	0.01	1.642	18.50	0.26	5.3	94.5	0.2	-0.03	0.86	0.86	1.74	2.5	0.010	0.84	0.0	0.05	18.87	0.00	1.643	18.44	0.20	5.6	94.1	0.2	-0.12	0.35	0.87	0.89	1.70	31956	3966	39	0	73	0	0	logfile
✔	7LQF	23484	2023-02-17	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.37	244.0	0.42	26.01	0.03	1.685	217.72	5.21	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.78	5376	512	64	0	0	0	0	logfile
✔	6Z1R	11039	2023-02-24	2020-05-14	3.29	3.42	3.09	3.3	0.007	0.71	0.0	0.04	15.07	0.00	1.890	9.22	0.00	6.6	93.4	0.0	-1.25	0.69	0.83	2.88	3.3	0.005	0.57	0.0	0.04	15.92	0.00	1.686	7.69	0.26	5.1	94.9	0.0	0.05	1.54	0.71	0.86	2.50	65754	4278	32	0	11	17	33137	logfile
✔	6DBQ	7847	2023-02-23	2018-05-03	4.22	4.34	—	4.2	0.005	1.05	2.0	0.04	23.25	0.01	1.539	28.02	0.12	10.4	89.5	0.1	-4.19	0.81	0.82	—	4.2	0.004	0.76	0.0	0.04	21.75	0.00	1.699	20.62	0.00	6.4	93.5	0.1	-1.19	1.53	0.80	0.81	—	19956	1939	10	222	6	0	0	logfile
✔	6Z1U	11040	2023-02-24	2020-05-14	3.47	3.57	3.25	3.5	0.008	0.74	0.0	0.05	14.81	0.00	1.905	11.83	0.00	8.9	91.1	0.0	-1.62	0.68	0.83	2.33	3.5	0.005	0.56	0.0	0.04	15.71	0.00	1.700	8.82	0.15	5.9	94.1	0.0	-0.23	0.38	0.68	0.85	2.15	65073	4239	32	0	11	17	32803	logfile
✔	3J94	6204	2023-02-23	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.003	0.78	0.0	0.04	13.83	0.00	1.701	15.43	0.00	4.6	94.9	0.6	0.64	2.61	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	6DBX	7853	2023-02-22	2018-05-03	4.2	4.39	—	4.2	0.005	0.85	0.0	0.05	20.21	0.00	2.076	20.45	0.00	11.9	88.0	0.2	-4.68	0.81	0.80	—	4.2	0.004	0.75	0.0	0.04	18.14	0.00	1.710	18.97	0.06	6.4	93.5	0.1	-1.29	0.95	0.82	0.83	—	17436	1933	8	100	6	0	0	logfile
✔	7LQ5	23481	2023-02-18	2021-02-13	3.4	3.53	3.25	3.5	0.013	1.31	0.0	0.07	19.67	0.01	1.857	27.57	0.45	12.9	87.1	0.0	-4.95	0.75	0.77	1.16	3.5	0.005	1.01	0.0	0.05	19.22	0.01	1.711	16.76	2.26	14.1	85.9	0.0	-2.69	1.04	0.76	0.81	1.26	6843	774	6	0	24	0	0	logfile
✔	7Z1H	14446	2023-02-21	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.22	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.95	2.0	0.04	14.20	0.00	1.714	20.05	0.06	11.1	88.6	0.4	-1.14	0.93	0.79	0.78	1.28	15032	1848	1	0	0	0	0	logfile
✔	7NXD	12637	2023-02-20	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.48	0.0	0.11	9.18	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.004	0.84	0.0	0.05	10.90	0.00	1.716	35.35	0.07	7.3	92.7	0.0	-1.38	1.28	0.90	0.74	—	12805	1595	18	0	48	0	0	logfile
✔	7ZAH	14580	2023-02-27	2022-03-22	2.7	3.02	2.71	2.8	0.017	0.83	0.0	0.05	14.11	0.06	1.407	3.78	1.24	3.4	96.6	0.0	-0.04	0.88	0.92	4.04	2.8	0.007	1.17	0.0	0.05	16.02	0.01	1.717	4.87	1.43	3.0	97.0	0.0	0.22	0.41	0.88	0.93	3.71	69366	4289	58	1596	70	379	0	logfile
✔	6oDY	20024	2023-02-26	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.12	0.02	1.721	102.91	3.91	37.7	61.0	1.3	-7.26	1.53	0.69	0.69	1.79	28116	2832	6	0	1326	0	0	logfile

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