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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EW3 | 28641 | 2024-03-15 | 2022-10-21 | 2.65159 | 3.20 | 2.63 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 10.10 | 0.00 | 2.260 | 2.58 | 0.16 | 1.7 | 98.3 | 0.0 | 1.12 | 0.78 | 0.90 | 4.36 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 13.22 | 0.00 | 1.057 | 6.16 | 0.88 | 2.2 | 97.8 | 0.0 | 1.52 | 1.17 | 0.75 | 0.89 | 3.47 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 8BPo | 16155 | 2024-03-20 | 2022-11-17 | 2.8 | 2.66 | 2.77 | 2.8 | 0.004 | 0.85 | 0.0 | 0.04 | 23.11 | 0.01 | 1.912 | 3.73 | 0.03 | 3.4 | 96.6 | 0.0 | -2.01 | 0.76 | 0.85 | 3.72 | 2.8 | 0.008 | 0.77 | 0.0 | 0.05 | 23.55 | 0.01 | 1.060 | 8.05 | 3.48 | 4.1 | 95.8 | 0.0 | -0.37 | 0.93 | 0.78 | 0.90 | 3.67 | 143326 | 7606 | 64 | 3814 | 246 | 0 | 0 | logfile |
✔ | 7TQD | 26066 | 2024-03-11 | 2022-01-26 | 2.9 | 3.57 | 2.94 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 12.10 | 0.00 | 1.960 | 3.21 | 0.00 | 2.0 | 98.0 | 0.0 | 0.95 | 0.80 | 0.82 | 3.99 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 14.85 | 0.00 | 1.062 | 4.49 | 0.99 | 1.9 | 98.1 | 0.0 | 0.85 | 2.47 | 0.81 | 0.83 | 3.66 | 8690 | 1096 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 8DST | 27688 | 2024-03-10 | 2022-07-22 | 3.2 | 2.71 | 2.73 | 3.4 | 0.046 | 2.10 | 0.0 | 0.03 | 22.27 | 0.00 | 2.205 | 41.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.44 | 0.57 | — | 2.4 | 0.136 | 9.30 | 191.0 | 0.34 | 28.93 | 0.03 | 1.065 | 133.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.16 | 0.55 | 0.80 | — | 3078 | 0 | 54 | 0 | 270 | 0 | 0 | logfile |
✔ | 8SHD | 40484 | 2024-03-13 | 2023-04-13 | 2.9 | 3.43 | 2.96 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 13.80 | 0.00 | 1.928 | 6.69 | 0.00 | 3.3 | 96.7 | 0.0 | 1.61 | 0.84 | 0.88 | 3.07 | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 15.34 | 0.00 | 1.065 | 7.48 | 0.98 | 3.4 | 96.6 | 0.0 | 1.33 | 0.28 | 0.83 | 0.89 | 2.85 | 66069 | 8588 | 49 | 0 | 48 | 19 | 0 | logfile |
✔ | 5oT7 | 3852 | 2024-03-02 | 2017-08-21 | 3.8 | 3.85 | 3.80 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 23.30 | 0.01 | 1.298 | 6.70 | 0.49 | 12.5 | 87.2 | 0.3 | -5.45 | 0.77 | 0.70 | 1.03 | 3.8 | 0.007 | 0.83 | 0.0 | 0.04 | 23.82 | 0.01 | 1.069 | 21.99 | 5.35 | 14.9 | 84.9 | 0.3 | -3.61 | 1.32 | 0.84 | 0.81 | 0.87 | 154665 | 6718 | 75 | 4614 | 805 | 0 | 0 | logfile |
✔ | 7QGU | 13959 | 2024-03-17 | 2021-12-10 | 4.75 | 7.20 | — | 5.6 | 0.010 | 1.50 | 1.0 | 0.04 | 24.12 | 0.02 | 1.064 | 11.45 | 0.26 | 6.6 | 91.0 | 2.3 | -1.82 | 0.70 | 0.57 | — | 5.5 | 0.010 | 1.17 | 0.0 | 0.05 | 26.12 | 0.01 | 1.070 | 79.37 | 0.00 | 10.3 | 88.9 | 0.8 | -1.60 | 2.88 | 0.82 | 0.84 | — | 135606 | 5791 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 7XHA | 33192 | 2024-03-14 | 2022-04-07 | 3.35 | 3.57 | 3.29 | 3.5 | 0.008 | 1.06 | 4.0 | 0.07 | 11.41 | 0.01 | 1.860 | 7.27 | 0.28 | 4.7 | 95.2 | 0.1 | -3.53 | 0.69 | 0.78 | 2.40 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.15 | 0.00 | 1.070 | 8.85 | 1.67 | 4.2 | 95.8 | 0.0 | 0.49 | 1.22 | 0.72 | 0.82 | 2.07 | 10102 | 1270 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 5iQR | 8107 | 2024-03-02 | 2016-03-11 | 3.0 | 3.10 | 3.03 | 3.1 | 0.008 | 1.25 | 41.0 | 0.10 | 24.24 | 0.02 | 0.899 | 7.48 | 6.07 | 7.5 | 91.0 | 1.5 | -2.52 | 0.76 | 0.81 | 1.93 | 3.0 | 0.003 | 0.68 | 0.0 | 0.03 | 23.77 | 0.01 | 1.070 | 14.69 | 4.52 | 5.3 | 94.4 | 0.2 | -0.61 | 2.06 | 0.81 | 0.86 | 1.86 | 154519 | 6570 | 74 | 4794 | 303 | 2 | 0 | logfile |
✔ | 8SEB | 40409 | 2024-03-14 | 2023-04-08 | 3.24 | 3.49 | 3.29 | 3.4 | 0.005 | 0.58 | 0.0 | 0.04 | 12.08 | 0.00 | 2.213 | 7.32 | 1.74 | 4.4 | 95.5 | 0.1 | 0.67 | 0.65 | 0.72 | 1.85 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 14.53 | 0.00 | 1.070 | 9.31 | 2.90 | 4.0 | 95.9 | 0.1 | 0.50 | 0.55 | 0.72 | 0.80 | 2.09 | 9609 | 1223 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7BoE | 12240 | 2024-03-25 | 2021-01-25 | 2.9 | 3.08 | 2.98 | 2.9 | 0.008 | 0.78 | 3.0 | 0.05 | 22.59 | 0.02 | 1.885 | 6.93 | 0.66 | 2.3 | 97.7 | 0.0 | -1.12 | 0.77 | 0.78 | 2.22 | 2.9 | 0.007 | 0.76 | 0.0 | 0.04 | 22.86 | 0.01 | 1.070 | 15.58 | 3.69 | 3.8 | 96.1 | 0.0 | -0.32 | 0.75 | 0.83 | 0.89 | 2.10 | 51969 | 2400 | 23 | 1534 | 153 | 0 | 0 | logfile |
✔ | 7TRG | 26089 | 2024-03-22 | 2022-01-28 | 3.0 | 3.44 | — | 3.3 | 0.005 | 0.68 | 1.0 | 0.04 | 15.52 | 0.00 | 1.932 | 4.57 | 0.19 | 3.8 | 96.2 | 0.0 | 1.26 | 0.64 | 0.86 | 2.32 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 16.25 | 0.00 | 1.071 | 4.44 | 1.12 | 3.7 | 96.3 | 0.0 | 1.14 | 1.13 | 0.63 | 0.86 | 1.96 | 33714 | 4377 | 25 | 0 | 24 | 8 | 0 | logfile |
✔ | 6Q95 | 4475 | 2024-03-02 | 2018-12-17 | 3.7 | 3.72 | — | 3.7 | 0.012 | 1.38 | 0.0 | 0.06 | 25.82 | 0.01 | 1.247 | 8.93 | 1.13 | 16.6 | 82.6 | 0.8 | -5.45 | 0.81 | 0.82 | 1.61 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 25.48 | 0.01 | 1.076 | 18.76 | 4.93 | 13.9 | 85.6 | 0.4 | -3.23 | 1.95 | 0.79 | 0.80 | 1.17 | 154751 | 5924 | 84 | 4932 | 910 | 0 | 0 | logfile |
✔ | 7o5H | 12736 | 2024-03-22 | 2021-04-08 | 3.1 | 2.93 | 3.04 | 2.8 | 0.002 | 0.33 | 0.0 | 0.03 | 21.63 | 0.00 | 1.262 | 5.88 | 0.98 | 2.1 | 97.9 | 0.0 | 1.09 | 0.86 | 0.83 | 1.84 | 2.8 | 0.006 | 0.67 | 0.0 | 0.04 | 22.33 | 0.01 | 1.076 | 13.62 | 3.21 | 3.9 | 96.1 | 0.0 | 0.32 | 1.48 | 0.87 | 0.85 | 1.45 | 34436 | 1730 | 22 | 964 | 167 | 0 | 0 | logfile |
✔ | 8BJQ | 16090 | 2024-03-20 | 2022-11-05 | 3.8 | 4.31 | 3.77 | 3.7 | 0.005 | 0.69 | 1.0 | 0.04 | 22.02 | 0.01 | 1.017 | 13.25 | 0.16 | 4.4 | 95.4 | 0.2 | -0.16 | 0.72 | 0.78 | 0.75 | 3.7 | 0.005 | 0.72 | 2.0 | 0.04 | 22.58 | 0.01 | 1.077 | 21.72 | 3.76 | 6.0 | 93.9 | 0.1 | -0.57 | 1.66 | 0.74 | 0.85 | 0.88 | 141384 | 8086 | 64 | 3580 | 211 | 0 | 0 | logfile |
✔ | 7RPW | 24624 | 2024-03-15 | 2021-08-04 | 4.38 | 4.64 | — | 4.4 | 0.003 | 0.57 | 0.0 | 0.04 | 19.29 | 0.00 | 1.756 | 18.05 | 9.97 | 11.3 | 88.6 | 0.1 | -2.82 | 0.77 | 0.68 | — | 4.4 | 0.004 | 0.70 | 0.0 | 0.05 | 18.85 | 0.00 | 1.078 | 20.80 | 0.00 | 12.6 | 87.4 | 0.1 | -3.21 | 3.74 | 0.77 | 0.68 | — | 10594 | 1179 | 10 | 62 | 5 | 0 | 0 | logfile |
✔ | 8TJV | 41312 | 2024-03-14 | 2023-07-24 | 2.99 | 3.53 | 2.99 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 24.19 | 0.00 | 1.526 | 10.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.89 | — | 3.1 | 0.008 | 0.70 | 0.0 | 0.04 | 23.53 | 0.01 | 1.086 | 12.37 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.92 | 0.92 | — | 8778 | 0 | 2 | 409 | 32 | 0 | 0 | logfile |
✔ | 7To3 | 26028 | 2024-03-16 | 2022-01-22 | 2.74 | 3.49 | 2.83 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 12.12 | 0.00 | 2.062 | 3.20 | 0.00 | 1.9 | 98.1 | 0.0 | 0.85 | 0.83 | 0.85 | 3.77 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.07 | 0.00 | 1.087 | 4.40 | 0.90 | 1.7 | 98.3 | 0.0 | 0.84 | 1.33 | 0.82 | 0.85 | 3.93 | 14764 | 1850 | 6 | 0 | 10 | 0 | 0 | logfile |
✔ | 4V19 | 2787 | 2024-03-15 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.32 | 0.0 | 0.05 | 23.56 | 0.01 | 1.860 | 9.75 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.004 | 0.72 | 1.0 | 0.04 | 22.66 | 0.01 | 1.093 | 9.21 | 4.48 | 3.8 | 96.1 | 0.1 | -0.27 | 1.50 | 0.76 | 0.88 | 2.14 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 5UYQ | 8620 | 2024-03-02 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.05 | 0.0 | 0.09 | 22.52 | 0.01 | 1.314 | 14.34 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | 3.5 | 0.005 | 0.78 | 1.0 | 0.04 | 23.98 | 0.01 | 1.096 | 30.27 | 5.43 | 13.4 | 86.4 | 0.2 | -3.16 | 0.73 | 0.87 | 0.82 | 0.42 | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |