Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K0T	22616	2022-07-04	2020-09-05	4.3	4.52	4.28	4.2	0.003	0.64	1.0	0.04	13.78	0.00	2.133	7.56	0.59	7.4	92.4	0.2	-0.12	0.84	0.76	—	4.2	0.036	2.69	55.0	0.11	15.79	0.02	1.291	109.78	0.00	43.2	55.3	1.6	-7.41	1.92	0.86	0.83	—	115288	12743	8	0	3608	0	0	logfile
✔	7LAR	23249	2022-07-04	2021-01-06	3.8	3.68	—	3.8	0.009	1.20	0.0	0.06	17.51	0.01	1.993	5.12	7.44	1.5	98.5	0.0	-2.56	0.62	0.81	2.85	3.8	0.003	0.68	0.0	0.04	16.37	0.00	1.297	9.40	0.73	8.1	91.9	0.0	-1.41	1.46	0.62	0.81	2.57	17714	1098	11	6	8	0	8697	logfile
✔	6YNX	10859	2022-07-07	2020-04-14	2.5	2.72	2.48	2.6	0.010	1.00	0.0	0.04	15.32	0.00	1.374	3.55	0.30	2.3	97.7	0.0	-2.86	0.73	0.89	5.87	2.6	0.003	0.54	0.0	0.04	15.75	0.00	1.297	7.60	0.57	2.8	97.2	0.0	1.16	1.05	0.74	0.90	4.91	134171	7929	64	0	50	0	64331	logfile
✔	7LAS	23250	2022-07-04	2021-01-06	4.4	4.09	—	4.1	0.009	1.36	0.0	0.06	18.99	0.01	1.386	5.67	7.55	1.5	98.5	0.0	-2.56	0.60	0.75	—	4.1	0.003	0.70	0.0	0.04	16.35	0.00	1.298	12.49	0.00	7.1	92.9	0.0	-1.61	1.78	0.62	0.78	—	18011	1098	12	24	8	0	8624	logfile
✔	6Yo0	10862	2022-07-03	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.26	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.003	0.56	0.0	0.04	13.53	0.00	1.303	8.01	0.67	4.2	95.8	0.0	1.22	0.79	0.84	0.88	3.19	55780	3598	17	0	10	0	28102	logfile
✔	6TA3	10421	2022-07-03	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	34.27	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	5MMJ	3532	2022-07-03	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.65	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.007	0.77	0.0	0.04	16.48	0.01	1.323	21.56	1.21	5.9	94.0	0.1	-0.59	1.60	0.92	0.86	1.13	55315	2806	31	1484	359	0	0	logfile
✔	7W85	32352	2022-07-05	2021-12-07	2.94	3.13	—	3.1	0.008	0.76	0.0	0.05	13.72	0.00	2.070	9.39	0.00	5.6	94.4	0.0	-0.79	0.64	0.63	2.89	3.1	0.011	1.05	5.0	0.05	16.37	0.01	1.325	11.44	1.42	4.8	95.2	0.0	0.18	1.33	0.75	0.84	2.55	81522	10440	48	0	42	0	0	logfile
✔	5Li0	4050	2022-07-07	2016-07-13	3.8	3.91	—	3.8	0.014	1.18	1.0	0.05	14.64	0.01	1.920	5.58	0.20	14.9	84.7	0.5	-5.64	0.75	0.79	1.99	3.8	0.009	0.98	1.0	0.04	15.87	0.01	1.328	21.27	0.46	13.6	86.2	0.2	-3.29	0.68	0.76	0.81	1.29	140825	5396	58	4575	41	162	0	logfile
✔	6o9J	0661	2022-07-07	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	55.38	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.11	13.0	0.05	16.81	0.01	1.333	31.28	0.41	22.8	74.1	3.1	-4.79	1.05	0.78	0.74	0.63	142682	5731	53	4564	0	0	0	logfile
✔	6GYS	0096	2022-07-07	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	15.69	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.004	0.72	0.0	0.04	15.55	0.00	1.337	22.21	0.00	9.1	90.9	0.0	-1.22	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	6LN9	0928	2022-07-03	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.76	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.004	0.66	0.0	0.04	14.95	0.01	1.356	10.37	0.12	4.4	95.6	0.0	-0.40	0.51	0.63	0.76	1.13	7612	987	1	0	2	0	0	logfile
✔	7L20	23121	2022-07-03	2020-12-15	3.15	3.39	—	3.4	0.007	0.87	0.0	0.05	16.21	0.01	0.505	11.02	0.84	7.3	92.2	0.5	-3.38	0.69	0.79	2.68	3.4	0.005	0.68	0.0	0.04	17.33	0.01	1.357	10.12	0.39	7.2	92.7	0.1	-0.58	1.22	0.72	0.85	2.28	110234	9454	67	1583	171	0	0	logfile
✔	7AM2	11821	2022-07-07	2020-10-07	3.4	3.52	—	3.4	0.009	0.95	43.0	0.07	20.01	0.01	1.157	24.00	8.65	15.0	84.3	0.7	-5.47	0.64	0.76	1.98	3.4	0.011	0.98	6.0	0.05	19.98	0.01	1.363	22.42	0.20	11.9	88.0	0.2	-3.33	1.35	0.64	0.77	1.77	139523	15384	80	839	42	0	0	logfile
✔	7K0S	22615	2022-07-04	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.93	0.00	2.069	9.77	0.95	7.8	92.0	0.2	-0.08	0.80	0.73	—	4.6	0.043	3.18	229.0	0.13	17.11	0.02	1.367	135.81	0.02	44.3	52.3	3.4	-7.54	2.27	0.84	0.82	—	116057	12911	8	0	3558	0	0	logfile
✔	7LF2	23298	2022-07-06	2021-01-15	3.72	4.26	3.84	4.0	0.007	1.03	0.0	0.06	9.01	0.01	0.855	11.80	0.16	11.0	88.9	0.1	-4.07	0.80	0.70	1.81	4.0	0.009	0.89	2.0	0.05	12.79	0.01	1.367	23.09	0.21	10.5	89.4	0.1	-2.30	2.50	0.81	0.72	1.76	33798	4452	24	0	12	0	0	logfile
✔	7NKX	12449	2022-07-08	2021-02-19	2.9	3.17	—	3.2	0.008	1.17	2.0	0.06	19.57	0.01	1.950	7.15	0.10	5.5	94.5	0.0	-0.66	0.83	0.76	1.50	3.2	0.004	0.71	0.0	0.04	21.00	0.00	1.369	15.88	2.14	4.3	95.7	0.0	0.00	1.21	0.83	0.79	1.61	49720	5506	33	283	11	0	0	logfile
✔	6RiE	4890	2022-07-07	2019-04-23	3.1	3.16	2.97	3.1	0.005	0.76	0.0	0.05	15.16	0.01	2.067	4.46	0.07	4.2	95.8	0.0	-3.21	0.80	0.85	3.51	3.1	0.003	0.54	0.0	0.04	16.16	0.00	1.371	7.85	0.07	3.2	96.8	0.0	-0.18	0.38	0.82	0.87	3.15	36583	4418	17	41	7	0	0	logfile
✔	6YUF	10930	2022-07-04	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.71	8.0	0.08	18.03	0.01	2.033	13.36	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.004	0.80	0.0	0.04	19.05	0.00	1.386	14.55	0.19	7.3	92.7	0.0	-0.88	0.64	0.78	0.76	0.20	19528	2264	8	64	4	0	0	logfile
✔	5TAZ	8390	2022-07-05	2016-09-10	4.3	4.46	4.85	4.3	0.004	0.86	4.0	0.05	9.92	0.01	1.373	4.90	0.58	10.2	89.6	0.2	-5.04	0.74	0.73	—	4.3	0.007	0.87	0.0	0.04	11.93	0.00	1.389	20.25	0.00	12.6	87.2	0.2	-2.04	0.80	0.75	0.77	—	121276	13500	12	0	3712	0	0	logfile

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