Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V7V	31783	2022-07-05	2021-08-21	3.1	3.59	—	3.5	0.002	0.51	0.0	0.04	13.71	0.00	2.145	6.15	0.00	4.0	95.9	0.1	0.39	0.80	0.83	1.92	3.4	0.007	0.64	0.0	0.05	15.05	0.00	2.158	6.91	0.19	5.3	94.6	0.1	0.00	1.17	0.83	0.87	1.85	25304	3089	42	0	84	0	0	logfile
✔	7V80	31785	2022-07-03	2021-08-22	3.9	4.10	—	4.0	0.003	0.61	0.0	0.04	14.85	0.00	2.120	8.76	0.00	6.2	93.8	0.0	-0.76	0.65	0.72	1.58	4.0	0.005	0.74	0.0	0.06	16.52	0.00	2.128	10.54	0.71	5.8	94.2	0.0	-0.24	1.16	0.67	0.75	1.25	6609	797	7	0	11	0	0	logfile
✔	7V7T	31781	2022-07-05	2021-08-21	3.0	3.62	—	3.5	0.003	0.52	0.0	0.05	13.56	0.00	2.149	6.88	0.00	4.1	95.8	0.1	0.13	0.82	0.83	2.10	3.5	0.003	0.55	0.0	0.04	15.19	0.00	2.192	7.26	1.52	4.4	95.5	0.1	0.26	0.39	0.81	0.84	1.99	25290	3089	41	0	83	0	0	logfile
✔	7E5R	30993	2022-07-07	2021-02-20	3.6	4.15	—	3.6	0.003	0.67	0.0	0.05	13.69	0.01	1.953	18.96	0.37	9.1	90.7	0.2	-4.12	0.78	0.67	1.38	3.6	0.004	0.66	0.0	0.04	15.16	0.00	2.157	14.90	0.25	8.6	91.4	0.0	-1.87	0.64	0.83	0.78	1.61	40683	5262	36	0	30	0	0	logfile
✔	7V7U	31782	2022-07-05	2021-08-21	3.0	3.56	—	3.4	0.005	0.58	0.0	0.05	13.61	0.00	2.194	7.42	0.00	4.8	95.1	0.1	0.24	0.81	0.84	2.19	3.4	0.002	0.55	0.0	0.04	15.10	0.00	2.218	6.50	1.55	3.6	96.3	0.1	0.53	0.43	0.81	0.84	2.05	25283	3088	41	0	83	0	0	logfile
✔	7oXR	13104	2022-07-04	2021-06-22	3.3	3.13	2.94	3.1	0.003	0.58	0.0	0.04	16.46	0.01	1.998	8.45	0.00	2.4	97.6	0.0	-1.36	0.77	0.87	4.32	3.1	0.005	0.65	0.0	0.05	18.22	0.00	2.171	6.98	0.25	2.7	97.3	0.0	-0.37	1.03	0.79	0.91	3.69	13670	1700	10	0	0	0	0	logfile
✔	7V85	31790	2022-07-06	2021-08-22	3.3	4.20	—	3.5	0.005	0.62	0.0	0.05	14.15	0.00	2.111	12.89	0.03	6.7	93.2	0.1	-0.87	0.84	0.79	1.69	3.5	0.006	0.66	0.0	0.05	15.67	0.00	2.031	14.75	0.21	7.7	92.2	0.1	-0.96	0.43	0.84	0.77	1.79	35101	4306	39	0	75	0	0	logfile
✔	7V7Z	31784	2022-07-07	2021-08-22	3.1	3.78	—	3.6	0.003	0.57	0.0	0.05	14.19	0.00	2.123	9.33	0.00	4.9	95.1	0.0	-1.02	0.77	0.74	1.58	3.6	0.010	0.88	1.0	0.05	15.95	0.00	1.924	10.27	0.12	6.4	93.6	0.0	-0.90	1.17	0.74	0.69	1.42	39851	4884	41	0	79	0	0	logfile
✔	7V7J	31773	2022-07-08	2021-08-21	3.4	4.17	—	3.8	0.004	0.56	0.0	0.05	13.55	0.00	2.144	9.66	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.004	0.57	0.0	0.04	14.98	0.00	2.137	8.93	0.18	5.9	94.0	0.1	-0.39	0.31	0.87	0.87	1.85	51072	6228	84	0	174	0	0	logfile
✔	7NKQ	12446	2022-07-03	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.76	0.00	2.010	7.06	0.87	2.3	97.7	0.0	2.24	0.31	0.82	0.84	2.58	10621	714	8	0	0	0	5312	logfile
✔	7V81	31786	2022-07-07	2021-08-22	3.2	3.68	—	3.5	0.005	0.62	0.0	0.05	14.04	0.00	2.068	10.82	0.03	6.5	93.5	0.0	-0.70	0.80	0.81	1.95	3.5	0.012	1.01	0.0	0.05	15.74	0.00	2.017	10.75	0.03	6.4	93.6	0.0	-0.66	1.15	0.77	0.75	1.87	35247	4311	39	0	82	0	0	logfile
✔	7PHG	13415	2022-07-03	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.003	0.65	0.0	0.04	13.66	0.00	1.966	17.62	0.00	10.7	89.3	0.0	-3.58	1.26	0.77	0.65	—	6469	427	3	0	0	0	3160	logfile
✔	7V7H	31771	2022-07-08	2021-08-21	3.2	4.02	—	3.7	0.002	0.54	0.0	0.05	13.43	0.00	2.162	7.30	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.003	0.53	0.0	0.05	14.75	0.00	2.175	7.29	0.07	4.6	95.4	0.0	-0.14	0.30	0.85	0.84	1.87	50949	6209	84	0	174	0	0	logfile
✔	7V78	31762	2022-07-05	2021-08-21	3.4	3.85	—	3.7	0.004	0.55	0.0	0.05	14.31	0.00	2.142	6.47	0.00	5.4	94.5	0.1	-0.20	0.74	0.77	2.64	3.7	0.008	0.72	0.0	0.05	15.67	0.00	2.118	7.81	0.18	6.5	93.4	0.1	-0.69	0.37	0.80	0.85	2.44	25677	3123	41	0	90	0	0	logfile
✔	7V7i	31772	2022-07-08	2021-08-21	3.3	4.09	—	3.8	0.005	0.59	0.0	0.05	13.45	0.00	2.128	8.36	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.004	0.57	0.0	0.04	14.85	0.00	1.991	7.32	0.18	5.6	94.3	0.1	-0.25	0.31	0.87	0.87	1.93	51072	6228	84	0	174	0	0	logfile
✔	7EKo	31171	2022-07-05	2021-04-06	3.3	2.87	—	3.3	0.009	0.99	1.0	0.06	15.70	0.01	2.119	13.18	2.55	6.1	93.8	0.1	-0.97	0.65	0.78	2.70	3.3	0.009	0.93	1.0	0.04	16.85	0.00	2.052	12.72	0.17	3.3	96.7	0.0	0.99	1.41	0.63	0.79	2.21	22470	2890	15	0	0	0	0	logfile
✔	7V77	31761	2022-07-05	2021-08-21	3.3	3.76	—	3.6	0.004	0.59	0.0	0.05	13.43	0.00	2.077	8.65	0.00	6.2	93.7	0.1	-0.49	0.77	0.77	2.10	3.6	0.006	0.68	0.0	0.05	15.08	0.00	2.113	9.75	0.48	7.1	92.8	0.1	-0.84	0.36	0.80	0.82	1.80	25293	3102	36	0	77	0	0	logfile
✔	7NJo	12397	2022-07-05	2021-02-17	2.92	2.77	—	2.7	0.004	0.53	0.0	0.04	14.87	0.00	2.080	8.27	0.00	2.9	97.1	0.0	1.46	0.85	0.85	3.17	2.6	0.004	0.56	0.0	0.04	16.43	0.00	1.699	9.09	0.78	2.7	97.2	0.0	1.53	0.36	0.86	0.87	3.08	74641	4934	31	0	11	16	37345	logfile
✔	7V79	31763	2022-07-05	2021-08-21	3.3	3.77	—	3.7	0.005	0.59	0.0	0.05	14.17	0.00	2.099	7.61	0.00	5.8	94.1	0.0	-0.49	0.71	0.77	2.36	3.7	0.005	0.60	0.0	0.05	15.51	0.00	2.123	7.04	0.51	5.7	94.3	0.0	-0.53	0.38	0.77	0.81	2.48	25677	3125	40	0	89	0	0	logfile
✔	7NJW	12425	2022-07-04	2021-02-17	3.67	3.61	—	3.8	0.003	0.50	0.0	0.04	14.13	0.00	2.178	7.79	0.00	3.2	96.8	0.0	2.21	0.62	0.82	1.69	3.8	0.004	0.53	0.0	0.04	15.38	0.00	2.160	8.04	0.00	2.3	97.7	0.0	4.21	0.40	0.62	0.82	1.89	16426	1118	12	0	0	0	8337	logfile

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