Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DMo	7964	2023-09-29	2018-06-05	4.1	4.16	—	4.1	0.008	1.27	0.0	0.06	13.73	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.83	0.0	0.05	13.68	0.00	2.175	14.88	0.00	9.1	90.9	0.0	-0.52	2.16	0.58	0.71	—	7853	982	3	0	7	0	0	logfile
✔	8iW7	35763	2023-09-28	2023-03-29	2.97	3.20	2.95	3.3	0.004	0.71	0.0	0.04	15.12	0.00	2.214	9.35	1.85	3.8	96.2	0.0	-1.84	0.67	0.78	2.02	3.2	0.003	0.63	0.0	0.04	15.58	0.00	2.193	7.73	3.71	3.5	96.5	0.0	-0.74	0.39	0.67	0.77	1.87	8305	1129	6	0	1	0	0	logfile
✔	6JNC	9847	2023-09-27	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.03	0.00	2.240	5.61	0.59	3.8	96.2	0.0	-1.17	1.78	0.52	0.88	2.42	3294	419	1	0	1	0	0	logfile
✔	7oTi	13060	2023-09-29	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.86	0.0	0.04	14.40	0.00	2.119	20.52	0.00	7.2	92.3	0.5	-1.27	1.77	0.52	0.51	—	9171	1182	1	0	0	0	0	logfile
✔	6VN7	21249	2023-09-29	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.54	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.005	0.65	0.0	0.04	14.31	0.00	2.106	8.15	0.44	2.3	97.7	0.0	0.87	0.75	0.56	0.74	2.05	8620	1052	7	0	10	0	0	logfile
✔	8A7D	15220	2023-09-30	2022-06-20	3.06	3.45	3.18	3.4	0.004	0.76	0.0	0.05	14.94	0.01	2.115	7.59	0.50	5.3	94.2	0.5	-0.22	0.64	0.77	2.66	3.4	0.003	0.63	0.0	0.04	15.80	0.00	2.144	8.11	0.67	4.7	95.0	0.3	0.25	0.54	0.60	0.75	2.34	10771	1361	5	0	17	0	0	logfile
✔	7CKB	30384	2023-09-30	2020-07-16	3.24	3.29	—	3.2	0.008	0.88	0.0	0.05	16.33	0.01	2.160	6.96	1.05	4.0	96.0	0.0	-0.87	0.85	0.88	2.17	3.2	0.006	0.72	0.0	0.05	17.10	0.00	2.145	7.26	1.43	2.5	97.5	0.0	-0.14	0.28	0.85	0.90	2.74	114840	15840	180	0	0	0	0	logfile
✔	7TS0	26104	2023-09-29	2022-01-31	2.8	3.02	—	3.1	0.004	0.79	0.0	0.05	8.38	0.01	2.273	3.92	0.10	1.5	98.5	0.0	-1.24	0.66	0.80	2.15	3.0	0.005	0.63	0.0	0.04	15.45	0.00	2.073	6.94	2.05	2.2	97.8	0.0	1.52	1.63	0.62	0.84	2.85	9383	1186	6	0	0	0	0	logfile
✔	7UAE	26422	2023-09-27	2022-03-12	2.6	2.71	2.62	2.3	0.012	1.76	2.0	0.10	12.76	0.02	2.282	0.11	0.00	3.9	96.1	0.0	-0.18	0.66	0.87	6.01	2.3	0.003	0.70	0.0	0.04	16.00	0.00	2.188	7.54	1.68	5.4	94.6	0.0	0.27	1.66	0.68	0.89	4.14	4513	535	7	0	18	0	0	logfile
✔	7P5J	13200	2023-09-28	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.72	0.0	0.04	15.50	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.003	0.79	0.0	0.04	17.82	0.00	2.172	11.51	0.45	1.8	98.2	0.0	3.11	0.48	0.53	0.77	—	6250	798	6	0	8	0	0	logfile
✔	7WQ4	32699	2023-09-28	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.04	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.56	0.0	0.04	15.87	0.00	2.151	6.33	2.82	1.9	98.1	0.0	0.90	1.28	0.64	0.83	3.61	8290	1048	7	0	2	0	0	logfile
✔	8D3W	27166	2023-09-30	2022-06-01	3.5	3.33	3.42	3.5	0.014	0.84	0.0	0.04	16.72	0.01	2.186	10.16	0.09	5.9	94.1	0.0	-0.26	0.62	0.82	1.71	3.4	0.003	0.56	0.0	0.04	17.04	0.00	2.170	8.57	0.37	4.9	95.1	0.0	0.04	0.42	0.61	0.80	1.65	10046	1280	4	0	1	0	0	logfile
✔	7CZ5	30505	2023-09-28	2020-09-07	2.6	2.89	—	2.9	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.60	0.80	4.16	2.9	0.002	0.53	0.0	0.04	16.06	0.00	2.174	6.39	1.46	2.9	97.1	0.0	0.42	0.47	0.61	0.82	2.89	8336	1046	11	0	3	3	0	logfile
✔	6R7X	4746	2023-09-30	2019-03-29	3.47	3.59	3.33	3.6	0.005	0.79	0.0	0.04	13.63	0.01	2.289	3.15	0.00	2.4	97.4	0.2	-3.00	0.65	0.86	3.62	3.6	0.003	0.53	0.0	0.04	15.06	0.00	2.246	7.14	0.19	1.9	98.1	0.0	1.77	0.34	0.64	0.88	3.36	10630	1258	4	0	28	0	0	logfile
✔	8EY2	28666	2023-09-28	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	3.8	0.003	0.66	0.0	0.04	16.12	0.00	2.101	15.52	0.55	7.0	93.0	0.0	-0.88	1.13	0.79	0.81	2.19	4908	634	4	0	0	0	0	logfile
✔	6B19	7031	2023-09-28	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.004	0.89	0.0	0.05	12.80	0.00	1.950	34.34	0.00	27.6	72.4	0.0	-4.77	1.29	0.77	0.65	—	5699	907	4	38	0	0	409	logfile
✔	8DD4	27334	2023-09-30	2022-06-17	3.1	3.27	3.15	3.2	0.003	0.65	0.0	0.04	14.94	0.00	2.219	8.36	0.00	2.8	97.0	0.2	0.21	0.74	0.75	2.15	3.2	0.003	0.63	0.0	0.04	16.72	0.00	2.241	12.68	0.52	3.1	96.7	0.2	0.49	1.61	0.75	0.79	2.11	10426	1255	4	0	0	21	0	logfile
✔	8EFL	28085	2023-09-30	2022-09-08	3.2	3.35	3.03	3.4	0.006	0.89	0.0	0.07	8.27	0.01	2.259	3.59	0.00	1.1	98.9	0.0	0.35	0.62	0.77	2.84	3.3	0.003	0.55	0.0	0.04	13.54	0.00	2.131	7.02	0.55	1.7	98.3	0.0	1.92	0.65	0.63	0.83	2.38	11750	1446	9	0	12	0	0	logfile
✔	8EF6	28069	2023-09-30	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.03	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	3.1	0.003	0.58	0.0	0.04	13.52	0.00	2.120	7.98	0.08	1.4	98.6	0.0	1.89	1.30	0.60	0.82	2.94	11686	1439	9	0	12	0	0	logfile
✔	8H8A	34540	2023-09-29	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.003	0.66	0.0	0.04	15.54	0.00	2.234	6.27	0.22	11.9	87.9	0.2	-2.50	1.14	0.77	0.89	3.84	8454	1039	2	0	0	0	0	logfile

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