Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DBM	27290	2023-04-28	2022-06-14	2.4	2.48	2.47	2.5	0.011	0.82	0.0	0.06	16.47	0.00	1.884	7.64	2.67	3.3	96.7	0.0	0.14	0.68	0.82	4.58	2.4	0.003	0.52	0.0	0.05	16.98	0.00	1.939	9.86	2.89	2.8	97.2	0.0	0.68	0.45	0.70	0.86	4.19	28716	3708	36	0	48	24	0	logfile
✔	6TAT	10427	2023-04-20	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.562	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.60	0.0	0.04	18.03	0.00	2.263	6.15	0.68	6.4	93.6	0.0	0.32	0.56	0.61	0.78	1.33	6790	820	5	0	0	0	0	logfile
✔	7NJM	12387	2023-04-28	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	14.84	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.003	0.50	0.0	0.04	16.33	0.00	1.756	6.60	0.49	2.3	97.6	0.0	1.55	0.90	0.86	0.88	3.33	74611	4932	31	0	11	16	37328	logfile
✔	7A96	11686	2023-04-29	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	7WUG	32830	2023-04-24	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.51	0.0	0.04	15.01	0.00	2.140	5.28	0.22	3.4	96.5	0.0	1.41	0.27	0.78	0.87	1.92	17515	2239	5	0	0	0	0	logfile
✔	7X23	32956	2023-04-21	2022-02-25	3.2	2.34	3.00	3.0	0.004	0.59	0.0	0.04	13.02	0.00	2.232	9.24	0.00	2.9	97.1	0.0	1.28	0.53	0.64	1.83	3.0	0.002	0.52	0.0	0.04	15.22	0.00	2.221	8.84	0.09	2.9	97.1	0.0	0.95	1.00	0.57	0.74	1.70	9976	1262	5	0	5	7	0	logfile
✔	7FCE	31525	2023-04-27	2021-07-14	3.1	3.19	—	3.1	0.010	0.98	0.0	0.07	12.91	0.01	2.343	1.98	0.99	4.6	95.3	0.2	-0.85	0.73	0.74	1.96	3.1	0.003	0.60	0.0	0.04	15.00	0.00	2.176	4.45	0.11	3.7	96.2	0.0	0.02	1.43	0.82	0.88	3.12	25542	3125	33	0	78	0	0	logfile
✔	7TAN	25777	2023-04-22	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.51	0.0	0.03	27.86	0.00	2.221	2.61	0.78	2.0	98.0	0.0	2.33	0.33	0.83	0.87	2.17	12119	768	12	294	0	0	0	logfile
✔	5JUY	8178	2023-04-28	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	7K11	22620	2023-04-21	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.003	0.62	0.0	0.04	16.63	0.00	2.259	7.50	0.37	9.4	90.6	0.0	-0.83	1.23	0.70	0.78	1.30	10011	1254	1	0	0	0	0	logfile
✔	6X3Z	22037	2023-04-24	2020-05-21	3.23	3.43	3.26	3.4	0.007	1.09	2.0	0.14	13.20	0.01	2.232	5.50	0.69	4.2	95.8	0.0	-2.07	0.71	0.85	3.87	3.4	0.003	0.64	0.0	0.04	15.41	0.00	2.187	10.04	0.37	3.6	96.4	0.0	-0.20	1.27	0.69	0.87	3.43	17365	2121	16	0	23	0	0	logfile
✔	7W4A	32299	2023-04-22	2021-11-26	2.76	2.16	2.69	2.2	0.006	0.71	0.0	0.04	13.12	0.00	2.048	7.08	0.09	2.3	97.7	0.0	1.29	0.63	0.77	3.24	2.2	0.002	0.54	0.0	0.04	15.88	0.00	2.033	6.62	1.80	2.4	97.6	0.0	1.44	0.43	0.63	0.79	2.98	9855	1245	5	0	7	12	0	logfile
✔	7B0S	11970	2023-04-25	2020-11-21	3.6	3.73	—	3.6	0.009	0.77	0.0	0.04	16.07	0.00	2.214	7.36	0.35	6.2	93.8	0.0	-0.53	0.83	0.86	2.66	3.6	0.003	0.56	0.0	0.04	16.85	0.00	2.225	4.20	0.22	2.5	97.5	0.0	1.27	0.36	0.82	0.85	1.80	21076	2572	8	0	12	0	0	logfile
✔	6TAU	10428	2023-04-20	2019-10-30	3.7	2.83	—	3.7	0.006	0.99	0.0	0.06	15.44	0.01	1.283	13.22	0.23	6.5	93.5	0.0	-4.23	0.55	0.75	1.32	3.0	0.003	0.63	0.0	0.04	17.43	0.00	2.202	7.23	0.79	6.0	94.0	0.0	0.47	0.65	0.56	0.76	1.46	8148	984	6	0	0	0	0	logfile
✔	7DTU	30854	2023-04-21	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.57	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.62	0.0	0.04	13.14	0.00	2.169	11.99	0.00	6.5	93.5	0.0	-0.70	1.10	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	7TD1	25820	2023-04-22	2021-12-30	3.08	3.31	—	3.3	0.003	0.43	0.0	0.04	11.99	0.00	2.168	2.81	0.28	1.9	98.1	0.0	-0.56	0.52	0.74	3.38	3.3	0.005	0.54	0.0	0.04	14.69	0.00	1.897	8.06	0.00	4.1	95.9	0.0	0.97	1.25	0.53	0.78	3.55	13492	906	5	0	1	0	6593	logfile
✔	7DTW	30856	2023-04-21	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.74	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.233	7.27	0.00	8.1	91.9	0.0	-1.09	0.58	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7PLS	13499	2023-04-23	2021-09-01	2.49	2.49	—	2.6	0.003	0.58	0.0	0.05	16.46	0.00	2.275	4.66	1.33	5.6	94.4	0.0	0.35	0.74	0.86	5.65	2.6	0.002	0.54	0.0	0.04	16.30	0.00	2.245	3.97	0.80	5.6	94.4	0.0	0.62	0.95	0.76	0.88	5.20	14224	1724	12	0	4	52	0	logfile
✔	6X3X	22036	2023-04-24	2020-05-21	2.92	3.08	2.97	3.0	0.010	1.11	3.0	0.15	12.82	0.01	2.241	4.17	0.58	4.2	95.8	0.0	-2.15	0.72	0.85	3.81	3.0	0.002	0.61	0.0	0.04	16.37	0.00	2.180	8.26	2.60	2.7	97.3	0.0	0.69	0.62	0.73	0.89	3.29	17470	2121	18	0	29	0	0	logfile
✔	6J9E	9785	2023-04-27	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.31	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.004	0.62	0.0	0.04	16.64	0.00	1.998	6.84	0.54	3.7	96.3	0.0	0.16	0.63	0.80	0.84	1.55	24427	3203	11	63	3	0	0	logfile

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