Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KDT	22829	2021-12-01	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	6X14	21988	2021-12-01	2020-05-18	3.71	3.82	—	3.8	0.008	1.10	0.0	0.05	16.45	0.01	2.282	6.68	0.00	3.2	96.8	0.0	-4.81	0.62	0.83	1.45	3.9	0.007	0.86	0.0	0.04	16.77	0.00	2.188	7.97	0.00	3.0	97.0	0.0	0.10	1.15	0.61	0.83	1.32	9486	1239	6	0	9	0	0	logfile
✔	7KAK	22773	2021-12-02	2020-10-01	3.9	4.59	4.06	4.2	0.003	0.54	0.0	0.04	11.57	0.00	2.246	6.34	0.00	2.9	97.1	0.0	-1.34	0.66	0.83	1.49	4.2	0.004	0.70	0.0	0.04	14.15	0.00	2.215	11.64	0.28	3.6	96.4	0.0	1.69	0.64	0.66	0.84	1.72	10437	1371	6	0	0	0	0	logfile
✔	6X93	22098	2021-12-01	2020-06-02	3.5	3.96	—	3.7	0.007	1.13	0.0	0.06	13.58	0.01	2.173	17.66	0.42	5.0	95.0	0.0	-3.25	0.70	0.61	1.85	3.7	0.012	1.54	1.0	0.05	15.49	0.00	1.980	18.82	0.21	7.5	92.5	0.0	-2.56	1.66	0.73	0.64	1.87	6846	1042	6	0	0	0	0	logfile
✔	7JSH	22454	2021-12-01	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	7L0P	23099	2021-12-01	2020-12-12	4.1	3.94	3.91	4.0	0.006	1.06	1.0	0.06	15.28	0.01	2.231	8.38	0.53	6.8	92.9	0.3	-3.81	0.56	0.72	—	4.0	0.003	0.72	0.0	0.04	14.46	0.00	2.171	15.17	0.13	4.7	95.2	0.1	-0.31	0.68	0.59	0.73	—	6953	888	5	0	0	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7Ji3	22343	2021-12-01	2020-07-22	3.46	4.28	—	4.0	0.005	0.79	0.0	0.05	13.46	0.01	2.365	6.77	0.00	3.6	96.4	0.0	-5.13	0.64	0.72	2.89	4.0	0.004	0.79	0.0	0.04	14.92	0.00	2.224	11.39	0.64	3.4	96.6	0.0	0.42	0.82	0.68	0.84	2.40	6000	777	3	0	0	0	0	logfile
✔	7KAR	22781	2021-12-02	2020-10-01	4.0	4.56	4.12	4.3	0.003	0.59	0.0	0.04	12.73	0.00	2.224	7.84	0.00	2.8	97.2	0.0	-1.41	0.66	0.83	—	4.3	0.003	0.65	0.0	0.04	14.59	0.00	2.156	9.64	0.09	2.2	97.8	0.0	1.79	0.53	0.67	0.84	—	10435	1341	6	0	0	0	0	logfile
✔	7L0S	23102	2021-12-01	2020-12-12	4.5	4.35	4.13	4.2	0.008	1.34	2.0	0.08	13.52	0.01	2.107	9.65	1.39	6.0	94.0	0.0	-3.19	0.61	0.63	—	4.2	0.004	0.78	0.0	0.04	13.21	0.00	2.147	19.30	0.00	3.8	96.2	0.0	-0.05	3.56	0.64	0.74	—	7906	1001	5	0	0	0	0	logfile
✔	6M49	30074	2021-12-01	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.65	0.00	2.231	9.43	0.66	3.2	96.8	0.0	1.83	3.60	0.48	0.73	1.18	3098	420	3	0	1	0	0	logfile
✔	6XZQ	10665	2021-12-01	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.80	1.95	3.8	0.003	0.59	0.0	0.04	15.95	0.00	1.932	9.38	0.23	5.1	94.9	0.0	-0.42	0.77	0.90	0.82	1.84	56888	3492	8	19	0	0	28480	logfile
✔	7DTC	30850	2021-12-01	2021-01-04	3.3	3.73	—	3.6	0.004	0.68	0.0	0.04	14.07	0.00	2.201	12.17	0.49	7.9	91.6	0.4	-3.34	0.52	0.80	1.81	3.5	0.003	0.77	0.0	0.04	16.13	0.00	2.222	11.22	0.59	8.6	91.4	0.1	0.36	1.35	0.54	0.82	1.30	9363	1151	1	0	9	0	0	logfile
✔	7KAH	22770	2021-12-02	2020-10-01	3.1	3.79	3.14	3.5	0.003	0.53	0.0	0.04	12.90	0.00	2.257	4.61	0.00	3.2	96.8	0.0	-1.32	0.69	0.86	2.50	3.5	0.003	0.58	0.0	0.04	14.66	0.00	2.172	5.59	0.54	3.0	97.0	0.0	1.88	1.26	0.69	0.87	1.89	10495	1349	6	0	0	0	0	logfile
✔	7KAo	22778	2021-12-02	2020-10-01	4.0	4.59	4.08	4.2	0.003	0.53	0.0	0.04	11.87	0.00	2.202	7.70	0.00	2.3	97.7	0.0	-1.25	0.65	0.84	—	4.2	0.007	0.80	0.0	0.04	14.15	0.00	2.105	14.51	0.45	3.8	96.2	0.0	1.16	1.25	0.66	0.85	—	10502	1349	6	0	0	0	0	logfile
✔	7DSL	30837	2021-12-01	2020-12-31	2.9	3.28	—	3.2	0.013	1.23	0.0	0.49	15.66	0.01	2.055	6.20	1.14	9.1	90.0	0.9	-3.74	0.70	0.86	2.36	3.3	0.003	1.19	0.0	0.11	15.72	0.00	2.125	7.32	1.90	7.0	92.9	0.1	0.55	0.55	0.69	0.86	2.24	7522	935	8	0	12	8	0	logfile
✔	7CMi	30407	2021-12-01	2020-07-27	2.9	3.36	—	3.3	0.006	1.00	0.0	0.05	15.30	0.01	1.904	7.35	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.003	0.76	0.0	0.05	16.70	0.00	2.184	8.23	3.28	7.0	92.8	0.1	-0.17	1.10	0.69	0.85	1.53	7353	928	7	0	10	6	0	logfile
✔	7JGF	22325	2021-12-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7A2i	11625	2021-12-01	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	7.09	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.003	0.52	0.0	0.04	14.05	0.00	2.096	6.14	0.00	4.4	95.6	0.0	-0.27	1.20	0.82	0.86	2.63	9196	1217	2	0	1	0	0	logfile
✔	7KR5	23002	2021-12-02	2020-11-18	3.3	3.93	—	3.9	0.004	0.57	0.0	0.04	12.42	0.00	2.197	12.00	0.77	5.0	95.0	0.0	-0.04	0.59	0.75	2.10	3.9	0.003	0.65	0.0	0.04	15.57	0.00	2.156	10.10	0.29	2.9	97.1	0.0	1.80	0.57	0.65	0.80	2.14	10534	1438	13	0	1	0	0	logfile

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