Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iP1	9697	2022-07-03	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	8.09	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.40	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✔	6EF2	9044	2022-07-05	2018-08-15	4.27	3.17	—	4.0	0.011	1.02	0.0	0.06	11.43	0.01	2.139	6.21	0.00	13.4	86.5	0.0	-5.32	0.62	0.80	—	3.9	0.005	0.82	0.0	0.05	12.92	0.00	2.087	12.25	0.00	7.8	92.1	0.1	-2.11	1.62	0.63	0.82	—	24659	3290	20	0	6	0	0	logfile
✔	6RiE	4890	2022-07-07	2019-04-23	3.1	3.16	2.97	3.1	0.005	0.76	0.0	0.05	15.16	0.01	2.067	4.46	0.07	4.2	95.8	0.0	-3.21	0.80	0.85	3.51	3.1	0.003	0.54	0.0	0.04	16.16	0.00	1.371	7.85	0.07	3.2	96.8	0.0	-0.18	0.38	0.82	0.87	3.15	36583	4418	17	41	7	0	0	logfile
✔	5L4G	4002	2022-07-06	2016-05-25	3.9	4.09	—	4.0	0.007	0.96	2.0	0.05	15.50	0.01	1.788	6.14	3.00	9.6	88.5	1.9	-5.01	0.65	0.86	2.39	4.0	0.006	0.73	0.0	0.04	16.90	0.00	1.706	12.80	0.83	6.4	93.4	0.2	-0.61	2.91	0.63	0.81	1.87	135488	8637	40	0	11	0	67796	logfile
✔	6QJH	4563	2022-07-02	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6SEG	10155	2022-07-03	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.88	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.004	0.60	0.0	0.03	29.04	0.00	2.004	8.15	0.17	1.5	98.5	0.0	1.18	0.37	0.67	0.81	2.48	11689	728	10	290	0	0	0	logfile
✔	5H1Q	9570	2022-07-05	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.137	9.01	0.93	9.3	90.1	0.6	-0.11	0.82	0.56	0.80	1.75	23784	2888	8	0	0	0	0	logfile
✔	6NMC	0446	2022-07-03	2019-01-10	4.24	4.55	—	4.2	0.014	1.16	6.0	0.07	16.40	0.01	2.015	20.07	2.45	10.2	89.4	0.4	-4.23	0.86	0.76	—	4.2	0.007	0.85	0.0	0.05	14.43	0.00	1.809	27.33	0.07	9.6	90.4	0.0	-1.43	1.84	0.90	0.85	—	12808	1480	8	25	2	6	0	logfile
✔	6RAY	4787	2022-07-07	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.83	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	4.3	0.005	0.85	0.0	0.04	15.24	0.00	2.082	15.74	0.09	11.4	88.5	0.1	-3.33	1.14	0.60	0.57	—	39071	4887	18	13	6	0	0	logfile
✔	6RQL	4984	2022-07-08	2019-05-16	2.9	2.93	—	3.0	0.009	1.09	1.0	0.06	12.93	0.01	1.977	6.72	0.74	8.3	91.7	0.0	-4.74	0.60	0.67	2.47	2.9	0.004	0.69	0.0	0.04	17.16	0.00	2.124	10.61	3.45	6.3	93.7	0.0	-0.91	1.92	0.69	0.73	2.10	51626	6246	20	84	0	0	0	logfile
✔	6SEE	10153	2022-07-03	2019-07-29	4.2	4.47	—	4.1	0.008	0.94	0.0	0.05	27.63	0.01	2.252	4.46	0.00	3.0	97.0	0.0	-1.74	0.87	0.83	—	4.1	0.004	0.69	0.0	0.04	28.07	0.00	2.034	17.94	0.00	3.1	96.9	0.0	0.57	0.73	0.87	0.83	—	11949	756	11	290	0	0	0	logfile
✔	6QiK	4560	2022-07-05	2019-01-20	3.1	3.35	—	3.3	0.014	0.99	2.0	0.06	15.84	0.01	1.872	3.56	0.80	8.3	91.5	0.2	-4.17	0.84	0.86	3.77	3.2	0.006	0.62	0.0	0.04	16.06	0.00	2.046	7.67	0.52	6.3	93.7	0.0	-1.43	0.43	0.85	0.88	3.22	128569	6843	53	3423	217	0	0	logfile
✔	6i2N	0333	2022-07-04	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.59	0.0	0.04	14.68	0.00	2.146	8.49	0.34	4.7	95.3	0.0	0.66	2.26	0.77	0.84	1.82	18970	2352	14	21	0	0	0	logfile
✔	3J8i	6179	2022-07-04	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.34	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.12	0.00	2.079	17.80	0.00	11.3	88.2	0.5	-2.07	1.75	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile
✔	6UUZ	20903	2022-07-06	2019-11-01	3.0	3.14	—	3.1	0.029	1.52	0.0	0.06	13.56	0.01	1.608	9.32	1.45	5.6	94.2	0.2	-4.07	0.62	0.65	3.25	3.1	0.005	0.70	0.0	0.05	15.44	0.00	2.184	13.14	1.60	5.3	94.7	0.0	-0.96	1.00	0.70	0.75	2.91	31818	4084	10	0	4	2	0	logfile
✔	6CAJ	7442	2022-07-05	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.96	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.011	1.12	2.0	0.04	15.91	0.00	1.756	14.31	2.92	4.3	95.7	0.0	-0.61	0.75	0.75	0.82	2.85	24295	3210	11	0	1	0	0	logfile
✔	6MPH	9189	2022-07-06	2018-10-06	3.8	4.28	—	3.9	0.006	0.79	0.0	0.05	12.56	0.01	2.286	6.16	6.01	5.3	94.6	0.2	-3.46	0.84	0.85	2.34	3.9	0.003	0.73	0.0	0.04	14.25	0.00	2.037	15.20	0.18	5.5	94.5	0.0	-1.26	0.76	0.84	0.86	2.04	32092	3843	33	0	155	0	0	logfile
✔	5LY6	4118	2022-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5G06	3366	2022-07-05	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.07	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.004	0.76	0.0	0.04	14.53	0.00	2.109	18.85	0.03	4.4	95.5	0.1	-0.63	1.79	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	5A63	3061	2022-07-03	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.68	8.0	0.11	19.25	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.73	0.0	0.04	17.94	0.00	2.201	12.69	0.57	5.9	93.8	0.3	-0.05	3.23	0.63	0.83	2.03	10003	1223	7	0	22	0	0	logfile

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