The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6iP1 | 9697 | 2022-07-03 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 8.09 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.95 | 0.0 | 0.04 | 18.38 | 0.00 | 2.200 | 16.40 | 1.02 | 7.3 | 92.7 | 0.0 | -0.36 | 1.25 | 0.60 | 0.75 | -0.05 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EF2 | 9044 | 2022-07-05 | 2018-08-15 | 4.27 | 3.17 | — | 4.0 | 0.011 | 1.02 | 0.0 | 0.06 | 11.43 | 0.01 | 2.139 | 6.21 | 0.00 | 13.4 | 86.5 | 0.0 | -5.32 | 0.62 | 0.80 | — | 3.9 | 0.005 | 0.82 | 0.0 | 0.05 | 12.92 | 0.00 | 2.087 | 12.25 | 0.00 | 7.8 | 92.1 | 0.1 | -2.11 | 1.62 | 0.63 | 0.82 | — | 24659 | 3290 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6RiE | 4890 | 2022-07-07 | 2019-04-23 | 3.1 | 3.16 | 2.97 | 3.1 | 0.005 | 0.76 | 0.0 | 0.05 | 15.16 | 0.01 | 2.067 | 4.46 | 0.07 | 4.2 | 95.8 | 0.0 | -3.21 | 0.80 | 0.85 | 3.51 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 16.16 | 0.00 | 1.371 | 7.85 | 0.07 | 3.2 | 96.8 | 0.0 | -0.18 | 0.38 | 0.82 | 0.87 | 3.15 | 36583 | 4418 | 17 | 41 | 7 | 0 | 0 | logfile |
✔ | 5L4G | 4002 | 2022-07-06 | 2016-05-25 | 3.9 | 4.09 | — | 4.0 | 0.007 | 0.96 | 2.0 | 0.05 | 15.50 | 0.01 | 1.788 | 6.14 | 3.00 | 9.6 | 88.5 | 1.9 | -5.01 | 0.65 | 0.86 | 2.39 | 4.0 | 0.006 | 0.73 | 0.0 | 0.04 | 16.90 | 0.00 | 1.706 | 12.80 | 0.83 | 6.4 | 93.4 | 0.2 | -0.61 | 2.91 | 0.63 | 0.81 | 1.87 | 135488 | 8637 | 40 | 0 | 11 | 0 | 67796 | logfile |
✔ | 6QJH | 4563 | 2022-07-02 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.61 | 0.0 | 0.05 | 15.77 | 0.00 | 2.278 | 5.61 | 0.00 | 2.3 | 97.7 | 0.0 | -2.55 | 1.57 | 0.31 | 0.78 | 2.85 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SEG | 10155 | 2022-07-03 | 2019-07-30 | 3.1 | 3.19 | — | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 27.88 | 0.01 | 2.283 | 3.10 | 0.00 | 1.3 | 98.7 | 0.0 | -3.47 | 0.66 | 0.79 | 3.38 | 3.2 | 0.004 | 0.60 | 0.0 | 0.03 | 29.04 | 0.00 | 2.004 | 8.15 | 0.17 | 1.5 | 98.5 | 0.0 | 1.18 | 0.37 | 0.67 | 0.81 | 2.48 | 11689 | 728 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 5H1Q | 9570 | 2022-07-05 | 2016-10-11 | 3.3 | 3.90 | — | 4.0 | 0.008 | 1.04 | 0.0 | 0.06 | 11.65 | 0.00 | 1.998 | 16.22 | 0.31 | 12.6 | 86.8 | 0.6 | -5.07 | 0.44 | 0.69 | 3.01 | 3.9 | 0.004 | 0.80 | 0.0 | 0.04 | 16.47 | 0.00 | 2.137 | 9.01 | 0.93 | 9.3 | 90.1 | 0.6 | -0.11 | 0.82 | 0.56 | 0.80 | 1.75 | 23784 | 2888 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NMC | 0446 | 2022-07-03 | 2019-01-10 | 4.24 | 4.55 | — | 4.2 | 0.014 | 1.16 | 6.0 | 0.07 | 16.40 | 0.01 | 2.015 | 20.07 | 2.45 | 10.2 | 89.4 | 0.4 | -4.23 | 0.86 | 0.76 | — | 4.2 | 0.007 | 0.85 | 0.0 | 0.05 | 14.43 | 0.00 | 1.809 | 27.33 | 0.07 | 9.6 | 90.4 | 0.0 | -1.43 | 1.84 | 0.90 | 0.85 | — | 12808 | 1480 | 8 | 25 | 2 | 6 | 0 | logfile |
✔ | 6RAY | 4787 | 2022-07-07 | 2019-04-08 | 4.28 | 4.39 | 4.31 | 4.4 | 0.013 | 1.77 | 39.0 | 0.16 | 18.46 | 0.02 | 1.031 | 19.83 | 7.45 | 17.4 | 81.8 | 0.8 | -5.68 | 0.58 | 0.59 | — | 4.3 | 0.005 | 0.85 | 0.0 | 0.04 | 15.24 | 0.00 | 2.082 | 15.74 | 0.09 | 11.4 | 88.5 | 0.1 | -3.33 | 1.14 | 0.60 | 0.57 | — | 39071 | 4887 | 18 | 13 | 6 | 0 | 0 | logfile |
✔ | 6RQL | 4984 | 2022-07-08 | 2019-05-16 | 2.9 | 2.93 | — | 3.0 | 0.009 | 1.09 | 1.0 | 0.06 | 12.93 | 0.01 | 1.977 | 6.72 | 0.74 | 8.3 | 91.7 | 0.0 | -4.74 | 0.60 | 0.67 | 2.47 | 2.9 | 0.004 | 0.69 | 0.0 | 0.04 | 17.16 | 0.00 | 2.124 | 10.61 | 3.45 | 6.3 | 93.7 | 0.0 | -0.91 | 1.92 | 0.69 | 0.73 | 2.10 | 51626 | 6246 | 20 | 84 | 0 | 0 | 0 | logfile |
✔ | 6SEE | 10153 | 2022-07-03 | 2019-07-29 | 4.2 | 4.47 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.05 | 27.63 | 0.01 | 2.252 | 4.46 | 0.00 | 3.0 | 97.0 | 0.0 | -1.74 | 0.87 | 0.83 | — | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 28.07 | 0.00 | 2.034 | 17.94 | 0.00 | 3.1 | 96.9 | 0.0 | 0.57 | 0.73 | 0.87 | 0.83 | — | 11949 | 756 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6QiK | 4560 | 2022-07-05 | 2019-01-20 | 3.1 | 3.35 | — | 3.3 | 0.014 | 0.99 | 2.0 | 0.06 | 15.84 | 0.01 | 1.872 | 3.56 | 0.80 | 8.3 | 91.5 | 0.2 | -4.17 | 0.84 | 0.86 | 3.77 | 3.2 | 0.006 | 0.62 | 0.0 | 0.04 | 16.06 | 0.00 | 2.046 | 7.67 | 0.52 | 6.3 | 93.7 | 0.0 | -1.43 | 0.43 | 0.85 | 0.88 | 3.22 | 128569 | 6843 | 53 | 3423 | 217 | 0 | 0 | logfile |
✔ | 6i2N | 0333 | 2022-07-04 | 2018-11-01 | 3.3 | 3.45 | 3.33 | 3.4 | 0.007 | 0.97 | 0.0 | 0.05 | 11.09 | 0.01 | 2.323 | 2.82 | 0.00 | 6.0 | 94.0 | 0.0 | -3.81 | 0.75 | 0.79 | 2.55 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 14.68 | 0.00 | 2.146 | 8.49 | 0.34 | 4.7 | 95.3 | 0.0 | 0.66 | 2.26 | 0.77 | 0.84 | 1.82 | 18970 | 2352 | 14 | 21 | 0 | 0 | 0 | logfile |
✔ | 3J8i | 6179 | 2022-07-04 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.34 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | 4.7 | 0.003 | 0.90 | 0.0 | 0.04 | 14.12 | 0.00 | 2.079 | 17.80 | 0.00 | 11.3 | 88.2 | 0.5 | -2.07 | 1.75 | 0.65 | 0.71 | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6UUZ | 20903 | 2022-07-06 | 2019-11-01 | 3.0 | 3.14 | — | 3.1 | 0.029 | 1.52 | 0.0 | 0.06 | 13.56 | 0.01 | 1.608 | 9.32 | 1.45 | 5.6 | 94.2 | 0.2 | -4.07 | 0.62 | 0.65 | 3.25 | 3.1 | 0.005 | 0.70 | 0.0 | 0.05 | 15.44 | 0.00 | 2.184 | 13.14 | 1.60 | 5.3 | 94.7 | 0.0 | -0.96 | 1.00 | 0.70 | 0.75 | 2.91 | 31818 | 4084 | 10 | 0 | 4 | 2 | 0 | logfile |
✔ | 6CAJ | 7442 | 2022-07-05 | 2018-01-31 | 2.8 | 2.84 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.96 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.33 | 0.15 | 2.28 | 2.9 | 0.011 | 1.12 | 2.0 | 0.04 | 15.91 | 0.00 | 1.756 | 14.31 | 2.92 | 4.3 | 95.7 | 0.0 | -0.61 | 0.75 | 0.75 | 0.82 | 2.85 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 6MPH | 9189 | 2022-07-06 | 2018-10-06 | 3.8 | 4.28 | — | 3.9 | 0.006 | 0.79 | 0.0 | 0.05 | 12.56 | 0.01 | 2.286 | 6.16 | 6.01 | 5.3 | 94.6 | 0.2 | -3.46 | 0.84 | 0.85 | 2.34 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 14.25 | 0.00 | 2.037 | 15.20 | 0.18 | 5.5 | 94.5 | 0.0 | -1.26 | 0.76 | 0.84 | 0.86 | 2.04 | 32092 | 3843 | 33 | 0 | 155 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2022-07-03 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 2.167 | 15.68 | 0.24 | 10.2 | 89.3 | 0.4 | -2.62 | 3.61 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G06 | 3366 | 2022-07-05 | 2016-03-17 | 4.2 | 4.89 | — | 4.7 | 0.036 | 3.53 | 246.0 | 0.21 | 17.03 | 0.03 | 1.189 | 3.07 | 3.01 | 5.9 | 92.3 | 1.9 | -2.39 | 0.66 | 0.46 | — | 4.7 | 0.004 | 0.76 | 0.0 | 0.04 | 14.53 | 0.00 | 2.109 | 18.85 | 0.03 | 4.4 | 95.5 | 0.1 | -0.63 | 1.79 | 0.88 | 0.79 | — | 26794 | 3420 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A63 | 3061 | 2022-07-03 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.68 | 8.0 | 0.11 | 19.25 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.004 | 0.73 | 0.0 | 0.04 | 17.94 | 0.00 | 2.201 | 12.69 | 0.57 | 5.9 | 93.8 | 0.3 | -0.05 | 3.23 | 0.63 | 0.83 | 2.03 | 10003 | 1223 | 7 | 0 | 22 | 0 | 0 | logfile |