Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B64	15862	2023-02-23	2022-09-26	2.589	2.35	2.34	2.5	0.020	4.46	0.0	0.04	20.81	0.00	1.980	8.44	1.19	0.8	99.2	0.0	3.50	0.67	0.88	4.98	2.5	0.004	1.15	0.0	0.04	19.92	0.00	1.956	7.44	1.57	1.1	98.9	0.0	2.97	0.89	0.67	0.90	4.87	21678	2249	66	0	75	0	0	logfile
✔	8DKX	27493	2023-02-17	2022-07-06	3.0	3.53	3.00	3.4	0.005	0.75	1.0	0.05	13.28	0.00	2.099	8.39	0.62	5.5	94.5	0.0	-3.42	0.62	0.84	4.43	3.4	0.003	0.60	0.0	0.04	15.64	0.00	2.169	7.12	2.28	5.1	94.9	0.0	-0.23	0.91	0.56	0.84	3.75	4370	553	3	0	0	0	0	logfile
✔	7TGE	25880	2023-02-23	2022-01-07	3.68	4.05	3.74	3.7	0.004	0.73	0.0	0.05	13.25	0.01	2.270	3.50	0.09	3.8	96.2	0.0	-1.30	0.80	0.72	0.89	3.7	0.007	0.75	0.0	0.05	14.37	0.00	1.955	13.78	0.17	5.9	94.1	0.0	-0.83	1.58	0.82	0.76	0.92	21461	2677	15	0	40	0	0	logfile
✔	8DNM	27574	2023-02-21	2022-07-11	2.76	3.58	2.88	3.4	0.006	0.85	4.0	0.05	12.93	0.01	2.217	8.35	0.86	3.6	96.4	0.0	-1.12	0.83	0.80	3.99	3.4	0.004	0.55	0.0	0.04	14.81	0.00	2.229	5.95	0.56	2.8	97.2	0.0	0.78	0.56	0.83	0.87	3.19	14880	1932	4	0	0	0	0	logfile
✔	7VAQ	31858	2023-02-27	2021-08-30	3.6	3.18	3.57	3.3	0.003	0.53	0.0	0.04	13.52	0.00	1.066	5.47	0.00	1.8	98.2	0.0	1.14	0.57	0.77	2.21	3.2	0.004	0.61	0.0	0.04	16.58	0.00	1.859	8.32	0.29	3.2	96.8	0.0	0.04	0.74	0.60	0.79	2.18	29558	3788	15	0	6	0	0	logfile
✔	7SL3	25190	2023-02-22	2021-10-22	3.4	3.65	—	3.5	0.002	0.54	0.0	0.04	13.25	0.00	2.238	8.44	0.32	6.4	93.4	0.2	-0.71	0.80	0.81	2.46	3.5	0.004	0.57	0.0	0.04	14.42	0.00	2.193	9.89	0.13	6.4	93.6	0.0	-0.80	1.14	0.81	0.84	2.59	14016	1736	6	0	0	0	0	logfile
✔	7P3Q	13182	2023-02-19	2021-07-08	3.12	3.23	3.11	3.2	0.009	1.34	0.0	0.07	14.87	0.01	2.218	11.33	0.40	4.5	95.5	0.0	0.44	0.68	0.81	1.87	3.2	0.004	0.60	0.0	0.04	15.72	0.00	2.092	17.63	0.40	4.2	95.8	0.0	0.83	0.82	0.69	0.86	1.79	9632	1176	16	0	24	0	0	logfile
✔	7LiD	23374	2023-02-20	2021-01-27	2.9	3.96	—	3.9	0.006	0.88	0.0	0.04	15.13	0.01	2.330	3.66	1.47	3.5	96.5	0.0	-2.01	0.69	0.76	0.95	3.9	0.003	0.64	0.0	0.04	17.07	0.00	2.263	7.93	2.29	2.5	97.5	0.0	2.49	0.55	0.52	0.70	0.79	12140	1524	8	0	4	0	0	logfile
✔	8DKi	27489	2023-02-17	2022-07-05	3.32	3.57	3.29	3.6	0.003	0.64	0.0	0.05	13.79	0.00	2.204	9.78	0.21	4.6	95.4	0.0	-0.62	0.62	0.84	2.61	3.6	0.003	0.62	0.0	0.04	15.85	0.00	2.212	10.59	0.21	6.6	93.4	0.0	-0.10	0.92	0.61	0.86	2.61	4365	552	3	0	0	0	0	logfile
✔	6YRG	10889	2023-02-24	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.74	0.0	0.04	13.07	0.00	2.157	15.69	0.00	9.7	90.2	0.1	-1.41	3.45	0.74	0.50	—	21992	2736	4	0	0	0	0	logfile
✔	6PXW	20523	2023-02-20	2019-07-28	3.1	3.31	—	3.3	0.008	0.99	0.0	0.06	9.83	0.01	2.254	4.99	0.16	9.9	89.6	0.5	-4.04	0.76	0.82	4.11	3.3	0.002	0.56	0.0	0.04	13.59	0.00	2.236	4.86	0.00	7.3	92.7	0.0	-2.03	0.79	0.75	0.82	3.36	11198	1386	6	0	0	0	0	logfile
✔	7P37	13178	2023-02-21	2021-07-07	2.96	3.18	3.03	3.2	0.005	0.85	0.0	0.05	11.41	0.00	2.280	7.21	0.00	2.4	97.6	0.0	1.79	0.68	0.76	2.89	3.1	0.002	0.50	0.0	0.04	15.53	0.00	2.170	9.70	2.18	2.5	97.5	0.0	1.44	0.92	0.70	0.81	3.10	14496	1764	24	0	36	0	0	logfile
✔	7TPE	26052	2023-02-24	2022-01-25	4.0	4.59	—	4.0	0.013	1.73	6.0	0.09	13.24	0.01	2.501	0.20	1.83	8.6	90.3	1.1	-1.39	0.84	0.79	—	3.9	0.003	0.64	0.0	0.04	13.60	0.00	2.155	9.04	0.13	6.1	93.9	0.1	-0.39	0.48	0.85	0.84	—	23199	2983	18	0	58	0	0	logfile
✔	7VAL	31849	2023-02-27	2021-08-30	3.1	2.59	2.99	2.9	0.003	0.55	0.0	0.04	12.97	0.00	1.776	3.43	0.00	1.5	98.5	0.0	1.44	0.56	0.80	3.46	2.9	0.003	0.59	0.0	0.04	16.08	0.00	1.896	5.72	0.13	2.2	97.8	0.0	0.55	0.57	0.66	0.87	3.41	29558	3788	15	0	6	0	0	logfile
✔	7ToV	26039	2023-02-24	2022-01-24	3.16	3.39	—	3.2	0.013	1.79	5.0	0.09	12.54	0.01	2.515	0.07	0.89	5.8	93.7	0.4	-0.81	0.83	0.86	4.13	3.2	0.005	0.63	0.0	0.04	13.35	0.00	2.010	4.21	0.04	4.6	95.3	0.1	0.14	0.51	0.85	0.89	3.41	23199	2983	18	0	58	0	0	logfile
✔	7SV7	25445	2023-02-19	2021-11-18	3.8	3.26	—	3.9	0.004	1.02	0.0	0.04	12.31	0.00	2.003	1.99	0.69	2.2	97.8	0.0	-0.82	0.60	0.81	2.35	3.9	0.002	0.55	0.0	0.04	15.41	0.00	1.999	5.52	0.30	2.5	97.5	0.0	1.05	0.59	0.61	0.81	1.47	9673	1173	3	0	32	0	0	logfile
✔	6WSL	21893	2023-02-24	2020-05-01	3.1	3.39	—	3.9	0.007	0.82	0.0	0.05	15.24	0.01	2.264	6.73	8.98	6.8	93.2	0.0	-5.33	0.54	0.84	2.29	3.9	0.004	0.70	0.0	0.04	16.39	0.00	2.160	13.90	0.20	6.6	93.4	0.0	-2.07	0.80	0.55	0.86	2.13	18204	2278	12	0	4	0	0	logfile
✔	7FDH	31543	2023-02-17	2021-07-16	3.72	3.93	—	3.8	0.004	0.72	0.0	0.05	14.51	0.00	2.145	13.12	0.29	3.8	96.2	0.0	-2.91	0.72	0.81	2.27	3.8	0.003	0.71	0.0	0.04	16.14	0.00	2.200	13.04	0.58	2.5	97.5	0.0	1.15	1.23	0.71	0.80	1.97	6488	791	4	0	5	0	0	logfile
✔	7TPF	26053	2023-02-24	2022-01-25	3.4	3.74	—	3.4	0.013	1.75	3.0	0.09	12.67	0.01	2.518	0.04	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.004	0.60	0.0	0.04	13.28	0.00	2.189	4.23	0.09	4.3	95.5	0.1	0.39	0.45	0.85	0.87	3.13	23199	2983	18	0	58	0	0	logfile
✔	7XW5	33491	2023-02-20	2022-05-26	2.96	3.19	2.99	3.2	0.014	1.89	8.0	0.10	13.14	0.02	2.119	2.60	0.53	4.6	95.4	0.0	-0.98	0.61	0.73	3.28	3.2	0.003	0.70	0.0	0.04	15.26	0.00	2.234	7.97	3.40	2.9	97.1	0.0	0.56	0.78	0.68	0.81	2.33	12618	1522	10	0	27	0	0	logfile

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