Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UGN	26490	2023-08-18	2022-03-25	3.4	3.60	3.35	3.4	0.004	0.65	0.0	0.19	12.77	0.01	0.844	6.76	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	3.4	0.006	0.74	0.0	0.05	15.34	0.00	2.166	8.64	0.63	6.6	93.4	0.0	-1.85	1.00	0.84	0.88	2.39	25698	3150	49	0	87	0	0	logfile
✔	6KWY	0781	2023-08-10	2019-09-09	2.72	2.94	—	2.9	0.011	1.23	3.0	0.10	10.94	0.01	1.627	8.33	0.95	5.5	94.4	0.1	-3.13	0.78	0.83	4.24	2.9	0.004	0.68	0.0	0.04	16.26	0.00	2.103	10.82	2.35	4.3	95.6	0.0	0.20	2.44	0.81	0.86	3.24	62499	7968	29	0	2	0	0	logfile
✔	6X6A	22074	2023-08-16	2020-05-27	3.6	3.58	—	3.4	0.010	1.29	0.0	0.08	14.43	0.01	2.206	13.75	0.45	7.5	92.4	0.1	-2.80	0.86	0.83	3.00	3.4	0.003	0.67	0.0	0.04	15.74	0.00	2.084	15.40	0.27	6.3	93.7	0.0	-1.07	0.57	0.86	0.82	2.41	20240	2524	8	0	0	0	0	logfile
✔	6RAX	4786	2023-08-25	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.93	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.22	0.00	2.143	13.30	0.36	10.1	89.8	0.0	-2.87	1.49	0.56	0.53	0.28	40970	5062	19	29	6	0	0	logfile
✔	7U5H	26350	2023-08-24	2022-03-02	3.32	3.20	3.49	3.3	0.006	0.94	12.0	0.07	14.00	0.01	1.424	10.04	5.32	3.2	96.8	0.0	-0.50	0.64	0.77	3.03	3.3	0.003	0.66	0.0	0.04	16.17	0.00	1.989	12.91	0.21	3.5	96.5	0.0	-0.48	1.26	0.66	0.79	2.51	39192	5064	24	0	24	0	0	logfile
✔	7WK5	32559	2023-08-20	2022-01-08	3.66	3.93	—	3.7	0.005	0.84	1.0	0.05	13.40	0.01	1.646	3.40	0.27	3.9	96.0	0.1	-4.59	0.66	0.58	0.35	3.8	0.003	0.71	0.0	0.04	15.43	0.00	2.119	12.93	0.30	3.6	96.4	0.0	-1.37	1.01	0.68	0.64	0.63	29601	3750	4	0	0	0	0	logfile
✔	7W2K	32263	2023-08-13	2021-11-24	2.9	3.00	—	3.0	0.007	0.77	2.0	0.04	17.96	0.01	2.125	9.55	1.51	3.6	96.3	0.1	1.00	0.80	0.88	3.00	3.0	0.003	0.56	0.0	0.04	17.48	0.00	2.170	8.41	2.04	3.6	96.3	0.0	0.96	0.29	0.79	0.88	2.90	66522	8140	66	0	37	0	0	logfile
✔	5Z3U	6882	2023-08-14	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	18.98	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.004	0.64	0.0	0.04	24.58	0.00	2.048	11.49	0.00	5.1	94.9	0.0	0.12	0.79	0.75	0.77	—	16766	1341	12	292	3	0	0	logfile
✔	7V2E	31643	2023-08-15	2021-08-08	2.8	2.87	—	2.8	0.008	0.90	8.0	0.05	15.67	0.01	1.695	9.97	0.40	3.6	96.1	0.2	0.73	0.80	0.87	3.71	2.8	0.002	0.55	0.0	0.04	16.74	0.00	2.134	7.19	1.34	3.5	96.5	0.1	1.15	0.35	0.79	0.89	3.28	68244	8269	68	0	45	0	0	logfile
✔	7Q4W	13819	2023-08-15	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.004	0.73	0.0	0.05	15.20	0.00	2.119	22.47	0.67	4.1	95.9	0.0	-0.03	0.63	0.92	0.84	0.36	18050	2364	12	0	22	0	0	logfile
✔	6N9X	0382	2023-08-16	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.65	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.003	0.65	0.0	0.04	14.75	0.00	1.857	8.78	0.05	4.6	95.4	0.0	-0.90	1.31	0.78	0.81	—	19658	2419	14	31	12	0	0	logfile
✔	6K41	9911	2023-08-10	2019-05-23	2.9	2.88	—	2.9	0.009	1.07	0.0	0.06	10.20	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.60	0.0	0.04	15.25	0.00	2.060	6.02	2.85	3.6	96.4	0.0	0.62	0.67	0.75	0.83	3.41	8430	1077	6	0	1	0	0	logfile
✔	7W31	32269	2023-08-13	2021-11-24	3.1	3.16	—	3.1	0.007	0.80	1.0	0.04	17.37	0.01	1.986	11.85	0.36	3.9	96.0	0.1	0.79	0.77	0.83	2.48	3.1	0.003	0.61	0.0	0.04	17.00	0.00	2.123	10.25	0.36	3.9	96.1	0.0	0.89	0.44	0.78	0.86	2.49	66476	8174	66	0	36	0	0	logfile
✔	7FJo	31625	2023-08-20	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.69	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.85	0.0	0.05	14.79	0.00	2.080	12.88	0.42	5.7	94.2	0.0	-0.56	3.15	0.77	0.79	1.92	28547	3640	12	0	25	0	0	logfile
✔	7W1P	32254	2023-08-14	2021-11-19	3.1	3.14	—	3.1	0.007	0.76	1.0	0.04	17.57	0.01	2.111	7.51	0.21	3.8	96.1	0.0	1.03	0.80	0.88	2.94	3.1	0.004	0.60	0.0	0.04	17.00	0.00	2.097	7.89	0.24	4.4	95.6	0.0	0.92	0.25	0.81	0.89	2.89	66868	8140	67	0	40	0	0	logfile
✔	6T9L	10415	2023-08-15	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.61	0.0	0.04	24.88	0.00	2.026	8.92	0.30	2.4	97.6	0.0	1.15	0.81	0.84	0.83	1.11	18157	1532	18	290	8	0	0	logfile
✔	6V1Y	21019	2023-08-19	2019-11-21	3.8	3.92	—	3.8	0.011	1.19	8.0	0.07	11.39	0.01	2.278	3.95	0.00	9.5	90.3	0.2	-3.80	0.66	0.74	2.65	3.8	0.004	0.70	0.0	0.04	14.69	0.00	2.161	6.61	0.45	7.7	92.0	0.2	0.12	1.28	0.69	0.82	2.29	27896	3568	16	0	16	0	0	logfile
✔	7V2D	31641	2023-08-14	2021-08-08	3.3	3.60	—	3.6	0.006	0.78	2.0	0.04	16.38	0.01	1.477	10.51	0.18	3.8	96.1	0.1	1.15	0.80	0.87	2.71	3.5	0.007	0.69	0.0	0.05	16.43	0.00	2.076	8.60	0.44	4.6	95.4	0.0	0.93	0.34	0.82	0.90	2.59	66899	8140	68	0	40	0	0	logfile
✔	7W4C	32300	2023-08-15	2021-11-27	2.7	2.83	—	2.8	0.007	0.82	0.0	0.04	18.50	0.01	2.188	7.03	1.33	3.4	96.5	0.1	0.86	0.80	0.89	3.32	2.8	0.002	0.53	0.0	0.04	17.52	0.00	2.146	6.93	1.79	3.5	96.4	0.0	1.26	0.27	0.78	0.88	3.06	68216	8270	69	0	47	0	0	logfile
✔	8CPS	16784	2023-08-23	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile

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