Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WEF	32449	2022-11-29	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.003	0.64	0.0	0.04	14.76	0.00	2.178	8.92	0.28	7.3	92.7	0.0	-1.35	0.35	0.55	0.77	1.93	3328	432	3	0	0	0	0	logfile
✔	7WEE	32448	2022-11-29	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.003	0.67	0.0	0.05	15.55	0.00	2.102	10.63	0.81	6.9	93.1	0.0	-1.44	0.45	0.47	0.79	—	3350	429	3	0	0	0	0	logfile
✔	7QKG	14041	2022-11-29	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7QiC	13987	2022-11-29	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.16	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.004	0.67	0.0	0.04	12.50	0.00	2.189	13.77	0.20	8.4	91.6	0.0	-0.07	1.38	0.65	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7SB2	24961	2022-11-29	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.87	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.003	0.71	0.0	0.04	16.20	0.00	2.235	16.23	0.00	5.9	94.1	0.0	0.97	0.46	0.82	0.85	0.58	4715	598	2	0	0	0	0	logfile
✔	7WRZ	32738	2022-11-29	2022-01-28	3.26	3.44	—	3.4	0.003	0.61	0.0	0.04	13.65	0.01	2.201	7.05	0.00	5.9	94.1	0.0	-1.03	0.65	0.85	3.98	3.4	0.003	0.54	0.0	0.04	15.69	0.00	2.244	6.27	0.29	4.7	95.3	0.0	-0.79	1.14	0.62	0.85	3.53	3270	414	4	0	2	0	0	logfile
✔	7QK1	14028	2022-11-29	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.14	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.006	0.81	0.0	0.05	16.34	0.00	2.070	6.83	1.01	4.1	95.9	0.0	-1.96	3.39	0.42	0.84	4.26	3444	450	6	0	0	0	0	logfile
✔	7PDD	13334	2022-11-29	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	21.59	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.76	0.0	0.04	13.98	0.00	2.150	21.36	0.00	5.3	94.7	0.0	-1.30	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7QWM	14189	2022-11-29	2022-01-25	2.76	2.21	2.43	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.62	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.004	0.70	0.0	0.05	18.21	0.00	2.103	9.84	0.53	6.8	93.2	0.0	-2.77	0.60	0.38	0.82	6.27	3255	405	3	0	0	0	0	logfile
✔	7VU8	32126	2022-11-29	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	11.96	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.003	0.67	0.0	0.04	16.30	0.00	2.421	5.65	5.30	4.8	95.2	0.0	-1.41	1.18	0.39	0.76	2.98	1433	170	1	0	1	0	0	logfile
✔	7FiL	31602	2022-11-29	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	3.5	0.003	0.79	0.0	0.04	18.76	0.00	2.217	10.49	5.53	6.7	93.1	0.2	1.46	1.56	0.71	0.75	0.59	3993	504	1	0	0	0	0	logfile
✔	7WS6	32748	2022-11-29	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.79	0.0	0.05	16.23	0.00	2.255	14.86	0.00	4.9	95.1	0.0	-1.37	0.66	0.67	0.74	2.34	3531	451	3	0	0	0	0	logfile
✔	7WS2	32741	2022-11-29	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.004	0.67	0.0	0.05	15.31	0.00	2.124	9.67	0.27	6.4	93.6	0.0	-1.84	0.48	0.69	0.82	3.35	3343	431	3	0	0	0	0	logfile
✔	7S15	24794	2022-11-29	2021-09-01	3.8	4.41	—	4.2	0.007	0.99	0.0	0.05	16.51	0.01	2.174	12.66	0.00	12.0	88.0	0.0	-4.51	0.51	0.77	1.80	4.2	0.003	0.71	0.0	0.04	18.35	0.00	2.283	11.87	0.58	5.9	94.1	0.0	-0.81	0.67	0.49	0.75	0.86	3207	382	1	0	1	0	0	logfile
✔	7SK2	25170	2022-11-29	2021-10-19	3.82	4.03	—	3.9	0.007	1.05	0.0	0.06	13.60	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.74	0.0	0.04	15.93	0.00	2.115	17.89	0.47	5.1	94.9	0.0	-0.64	0.53	0.50	0.70	1.11	4177	532	1	0	1	0	0	logfile
✔	7UHB	26511	2022-11-29	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.004	0.63	0.0	0.04	16.50	0.00	2.265	9.19	2.84	4.1	95.9	0.0	0.51	2.44	0.71	0.84	3.45	2141	270	3	0	3	0	0	logfile
✔	7QES	13939	2022-11-29	2021-12-03	2.6	3.37	—	3.0	0.009	0.66	0.0	0.04	13.87	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.61	0.0	0.04	15.28	0.00	2.162	3.90	0.91	3.1	96.9	0.0	2.67	1.25	0.78	0.86	2.82	3076	366	6	0	10	14	0	logfile
✔	7QEU	13941	2022-11-29	2021-12-03	2.7	3.39	—	3.0	0.009	0.68	0.0	0.04	13.62	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.59	0.0	0.04	15.00	0.00	2.243	3.99	1.24	2.3	97.7	0.0	3.28	0.49	0.78	0.87	2.55	3002	359	6	0	6	7	0	logfile
✔	7QEV	13942	2022-11-29	2021-12-03	2.9	3.46	—	3.1	0.010	0.74	0.0	0.05	13.76	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.66	0.0	0.04	15.95	0.00	2.153	5.61	1.17	2.9	97.1	0.0	2.25	1.67	0.79	0.86	2.57	3204	383	6	0	8	8	0	logfile
✔	8CXo	27062	2022-11-29	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.02	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.75	0.0	0.04	15.76	0.00	2.158	15.14	0.43	4.2	95.8	0.0	1.18	2.09	0.62	0.80	0.81	4392	551	1	0	1	0	0	logfile

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