Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PoM	20416	2021-12-01	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.24	0.0	0.06	21.39	0.01	1.928	58.97	0.00	0.0	0.0	0.0	—	1.75	0.74	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7PBW	13307	2021-12-01	2021-08-02	2.1	1.98	—	2.1	0.013	4.31	0.0	0.05	21.01	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	2.40	0.0	0.04	17.14	0.01	2.127	8.41	0.15	0.0	100.0	0.0	4.26	0.30	0.77	0.89	7.33	9500	873	54	0	81	230	0	logfile
✔	7EZ2	31386	2021-12-01	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	2.9	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.27	0.00	0.0	0.0	0.0	—	1.04	0.70	0.82	—	8698	0	3	406	31	0	0	logfile
✔	6X5i	22051	2021-12-01	2020-05-26	4.3	4.27	—	4.0	0.061	3.24	210.0	0.20	32.42	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.61	210.0	0.14	27.26	0.00	1.233	70.93	0.00	0.0	0.0	0.0	—	3.50	0.68	0.73	—	4480	70	70	0	280	0	0	logfile
✔	6UES	20755	2021-12-01	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.77	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7EZ0	31385	2021-12-01	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.69	0.0	0.04	15.71	0.00	1.877	8.66	0.00	0.0	0.0	0.0	—	1.91	0.78	0.86	—	8306	0	1	387	27	0	0	logfile
✔	6QYZ	4680	2021-12-01	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.15	0.0	0.07	28.39	0.01	2.043	76.21	0.00	0.0	0.0	0.0	—	4.53	0.72	0.62	—	7300	0	5	345	0	0	0	logfile
✔	6XL6	22235	2021-12-01	2020-06-28	3.0	3.41	—	3.3	0.033	0.71	0.0	0.10	20.19	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.006	0.81	0.0	0.07	20.85	0.01	2.004	11.25	0.61	0.0	100.0	0.0	-1.45	0.27	0.75	0.84	3.03	5456	536	6	46	4	0	0	logfile
✔	6UET	20756	2021-12-01	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.97	0.0	0.05	22.75	0.01	1.773	50.21	0.00	0.0	0.0	0.0	—	0.77	0.65	0.80	—	3869	0	1	119	1	0	1291	logfile
✔	6WKY	21813	2021-12-01	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.94	0.0	0.05	15.75	0.00	2.311	20.60	0.00	0.2	99.8	0.0	-1.99	1.44	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6VSC	21376	2021-12-01	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.30	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.75	0.0	0.05	18.24	0.01	2.083	17.03	3.77	0.2	99.7	0.1	0.63	1.23	0.87	0.84	3.28	9670	1175	5	0	0	0	0	logfile
✔	7N0L	24108	2021-12-01	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	13.40	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.003	0.70	0.0	0.04	21.23	0.00	2.185	11.86	4.06	0.3	99.7	0.0	2.11	1.26	0.57	0.81	2.04	5270	626	4	0	2	0	0	logfile
✔	7LRC	23494	2021-12-01	2021-02-16	2.97	4.17	2.92	3.5	0.006	0.48	0.0	0.04	7.93	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.57	0.0	0.04	11.41	0.00	2.042	8.52	0.90	0.4	99.6	0.0	3.60	0.55	0.76	0.85	2.96	6202	762	6	0	6	0	0	logfile
✔	6VSA	21373	2021-12-01	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.006	0.63	0.0	0.04	17.50	0.00	2.159	10.74	2.03	0.6	99.3	0.1	1.33	1.15	0.93	0.91	4.38	9712	1175	10	0	0	42	0	logfile
✔	6XLK	22246	2021-12-01	2020-06-28	3.3	3.63	—	3.5	0.033	0.79	0.0	0.10	20.17	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.005	0.65	0.0	0.04	20.64	0.00	1.959	12.00	0.00	0.8	99.2	0.0	-1.40	0.34	0.79	0.86	2.82	5456	536	6	46	4	0	0	logfile
✔	6WQ0	21867	2021-12-01	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.003	0.59	0.0	0.04	15.19	0.00	2.258	4.52	0.95	0.8	99.2	0.0	3.19	1.11	0.60	0.90	3.71	57467	6026	48	602	0	0	0	logfile
✔	7P5M	13201	2021-12-01	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.55	0.0	0.04	14.29	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.016	1.49	1.0	0.04	17.09	0.01	1.835	13.48	0.46	0.9	99.1	0.0	3.87	0.43	0.54	0.77	0.92	6204	788	8	0	12	0	0	logfile
✔	6E9Y	9020	2021-12-01	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.50	0.0	0.03	11.02	0.00	2.065	9.40	0.00	1.0	99.0	0.0	2.31	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6QJP	4565	2021-12-01	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	7B03	11955	2021-12-01	2020-11-18	2.93	2.97	—	2.9	0.005	0.90	0.0	0.04	13.62	0.00	2.190	7.91	0.00	1.9	98.1	0.0	1.34	0.69	0.81	1.85	2.9	0.002	0.47	0.0	0.04	16.37	0.00	2.129	8.54	2.03	1.1	98.9	0.0	2.05	0.41	0.70	0.83	1.42	8670	1085	10	0	5	0	0	logfile

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