Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X64	22069	2023-11-16	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7YC8	33736	2023-11-14	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	16.48	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.80	0.0	0.04	21.93	0.01	1.981	67.90	0.00	0.0	0.0	0.0	—	1.23	0.97	0.89	—	8335	0	1	388	1	0	0	logfile
✔	8DST	27688	2023-11-13	2022-07-22	3.2	2.71	2.73	3.4	0.046	2.10	0.0	0.03	22.27	0.00	2.205	41.47	0.00	0.0	0.0	0.0	—	0.44	0.57	—	2.4	0.136	9.30	191.0	0.34	28.93	0.03	1.065	133.79	0.00	0.0	0.0	0.0	—	2.16	0.55	0.80	—	3078	0	54	0	270	0	0	logfile
✔	7UR5	26705	2023-11-13	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.006	0.88	0.0	0.05	20.44	0.01	2.010	16.03	0.00	0.0	0.0	0.0	—	1.86	0.08	0.66	—	5709	0	3	270	0	0	0	logfile
✔	6WL7	21816	2023-11-21	2020-04-18	3.8	4.18	—	3.9	0.006	0.58	0.0	0.04	14.93	0.00	2.204	8.50	0.00	1.2	98.8	0.0	3.28	0.79	0.87	2.36	3.9	0.005	0.97	0.0	0.04	17.47	0.00	2.173	14.78	2.10	0.0	100.0	0.0	4.93	1.01	0.79	0.86	1.94	34350	4350	150	0	0	0	0	logfile
✔	7URi	26713	2023-11-13	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	24.06	0.01	2.073	23.33	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7RX5	24725	2023-11-14	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	7R6N	24283	2023-11-14	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	17.22	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	17.79	0.01	1.759	18.24	0.00	0.0	0.0	0.0	—	1.27	0.58	0.76	—	7588	0	1	354	12	0	0	logfile
✔	6WL1	21815	2023-11-16	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.241	6.67	0.67	0.0	100.0	0.0	6.23	0.72	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6PoM	20416	2023-11-13	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.29	0.0	0.06	21.60	0.01	1.918	61.40	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7SAM	24952	2023-11-13	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	22.81	0.01	1.797	83.72	0.00	0.0	0.0	0.0	—	5.81	0.96	0.88	—	5399	0	1	169	0	0	1802	logfile
✔	7QV6	14168	2023-11-13	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.39	0.0	0.06	11.93	0.00	2.389	1.45	0.00	0.0	100.0	0.0	0.74	0.46	0.40	0.86	5.96	4842	306	18	0	0	0	2556	logfile
✔	6WL9	21818	2023-11-18	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.85	0.0	0.05	13.42	0.00	2.210	16.90	0.05	0.0	100.0	0.0	2.71	0.97	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	7URM	26714	2023-11-13	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.80	0.01	1.988	29.25	0.00	0.0	0.0	0.0	—	1.68	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	6oDJ	20021	2023-11-19	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6oEH	20020	2023-11-21	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.28	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	7RX4	24724	2023-11-15	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.003	0.51	0.0	0.04	16.36	0.00	2.337	5.07	1.27	0.0	100.0	0.0	6.07	0.49	0.62	0.80	0.89	13560	1740	60	0	0	0	0	logfile
✔	7T6E	25714	2023-11-13	2021-12-13	3.1	3.11	—	3.1	0.129	5.90	125.0	0.23	23.20	0.02	2.041	30.29	0.00	0.0	0.0	0.0	—	0.60	0.87	—	3.1	0.122	5.61	134.0	0.36	21.80	0.02	2.082	31.46	0.00	0.0	0.0	0.0	—	0.19	0.66	0.90	—	3480	0	60	0	300	0	0	logfile
✔	8i7N	35223	2023-11-14	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	14.75	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.008	0.72	0.0	0.04	15.20	0.01	1.929	5.19	0.00	0.0	0.0	0.0	—	0.94	0.88	0.92	—	8979	0	1	418	29	0	0	logfile
✔	6UET	20756	2023-11-13	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.95	0.0	0.05	22.51	0.01	1.786	49.59	0.00	0.0	0.0	0.0	—	0.78	0.66	0.80	—	3869	0	1	119	1	0	1291	logfile

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