Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oEF	20020	2021-10-07	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.18	0.0	0.05	5.88	0.00	2.195	7.66	0.00	0.0	0.0	0.0	—	0.60	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6X5i	22051	2021-10-03	2020-05-26	4.3	4.27	—	4.0	0.061	3.24	210.0	0.20	32.42	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.57	210.0	0.14	27.47	0.00	1.582	67.32	0.00	0.0	0.0	0.0	—	4.38	0.66	0.73	—	4480	70	70	0	280	0	0	logfile
✔	6oDJ	20021	2021-10-05	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.98	0.00	2.121	11.49	0.00	0.0	0.0	0.0	—	0.66	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6oEH	20020	2021-10-06	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.6	0.007	1.05	0.0	0.04	5.10	0.00	2.208	12.88	0.00	0.0	0.0	0.0	—	0.56	0.41	0.81	—	32900	0	14	0	6580	0	0	logfile
✔	6LHW	0901	2021-10-04	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.48	0.00	2.046	43.52	0.00	0.0	0.0	0.0	—	3.27	0.81	0.80	—	7644	0	3	0	1541	0	0	logfile
✔	6RVV	4443	2021-10-03	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.004	0.65	0.0	0.05	18.19	0.00	2.076	10.77	1.08	0.2	99.8	0.0	-0.59	2.05	0.80	0.83	2.75	110208	14520	384	0	120	0	0	logfile
✔	3J89	6123	2021-10-03	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	6WL9	21818	2021-10-05	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.27	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.005	0.84	0.0	0.05	14.03	0.00	2.197	18.55	0.00	0.2	99.8	0.0	2.52	1.02	0.74	0.87	—	23400	3016	104	0	0	0	0	logfile
✔	6WL8	21817	2021-10-05	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.74	0.0	0.04	14.57	0.00	2.206	13.23	0.00	0.3	99.7	0.0	3.40	1.84	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✔	6VSC	21376	2021-10-03	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.09	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.78	0.0	0.04	18.22	0.00	2.041	17.92	4.35	0.3	99.7	0.0	0.31	1.26	0.87	0.84	3.22	9670	1175	5	0	0	0	0	logfile
✔	7LRC	23494	2021-10-03	2021-02-16	2.97	4.17	2.92	3.5	0.006	0.48	0.0	0.04	7.93	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.57	0.0	0.04	11.48	0.00	1.873	8.77	1.36	0.3	99.7	0.0	3.72	0.58	0.76	0.86	2.83	6202	762	6	0	6	0	0	logfile
✔	6VSA	21373	2021-10-03	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	12.84	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.006	0.64	0.0	0.04	17.43	0.00	2.161	11.01	1.45	0.3	99.6	0.1	1.39	1.15	0.93	0.90	4.43	9712	1175	10	0	0	42	0	logfile
✔	7CG7	30351	2021-10-07	2020-06-30	3.61	3.98	—	3.9	0.005	0.66	0.0	0.04	12.61	0.00	2.027	9.40	2.26	5.6	94.4	0.0	-2.97	0.77	0.82	1.47	3.9	0.003	0.63	0.0	0.04	15.69	0.00	2.122	11.87	0.27	0.4	99.6	0.0	-0.03	1.51	0.77	0.81	1.72	40290	5100	34	0	0	0	0	logfile
✔	6MRT	9212	2021-10-03	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.39	0.00	2.218	3.12	1.36	0.4	99.6	0.0	5.29	3.08	0.73	0.86	2.53	26868	3420	12	0	0	0	0	logfile
✔	7KoG	22975	2021-10-04	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.18	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	3.8	0.003	0.77	0.0	0.04	16.78	0.00	2.136	11.24	0.05	0.5	99.5	0.0	3.04	1.91	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	7N0L	24108	2021-10-03	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	13.21	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.004	0.71	0.0	0.04	19.59	0.01	2.173	13.60	4.61	0.5	99.5	0.0	1.89	1.26	0.57	0.81	1.98	5270	626	4	0	2	0	0	logfile
✔	6L3U	0826	2021-10-04	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.93	0.0	0.05	17.70	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.51	0.0	0.03	16.87	0.00	1.979	2.09	1.51	0.5	99.5	0.0	2.74	0.94	0.64	0.85	3.01	19698	1206	18	0	12	174	9588	logfile
✔	6WQ0	21867	2021-10-03	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.003	0.57	0.0	0.04	15.10	0.00	2.257	4.79	0.99	0.5	99.5	0.0	3.31	1.11	0.58	0.89	3.76	57467	6026	48	602	0	0	0	logfile
✔	6L3V	0827	2021-10-04	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.89	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.59	0.0	0.03	16.56	0.00	2.177	2.96	1.31	0.5	99.5	0.0	2.35	3.60	0.59	0.86	2.76	19416	1206	12	0	6	0	9528	logfile
✔	6ZGL	11210	2021-10-04	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	8.33	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.55	0.0	0.04	15.71	0.00	2.114	4.82	1.06	0.7	99.3	0.0	3.63	0.75	0.75	0.82	7.01	15760	1848	24	0	0	964	0	logfile

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