Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SD1	10145	2022-07-07	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.45	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	2.7	0.004	0.57	0.0	0.04	16.78	0.00	2.170	8.57	1.31	0.0	100.0	0.0	1.91	0.58	0.76	0.87	4.46	39369	4983	33	0	0	0	0	logfile
✔	6oEH	20020	2022-07-06	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.25	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	6X64	22069	2022-07-04	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.24	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7oHF	12901	2022-07-06	2021-05-10	3.0	3.29	3.12	3.4	0.008	0.89	0.0	0.05	9.77	0.01	2.144	2.67	0.00	0.6	99.4	0.0	-7.39	0.64	0.80	4.20	3.4	0.002	0.60	0.0	0.04	15.45	0.00	2.127	8.32	0.12	0.0	100.0	0.0	-0.18	1.61	0.63	0.82	2.79	33576	4056	24	0	0	0	0	logfile
✔	7R6N	24283	2022-07-03	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	17.22	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	17.80	0.01	1.761	18.68	0.00	0.0	0.0	0.0	—	1.27	0.58	0.76	—	7588	0	1	354	12	0	0	logfile
✔	6WKX	21812	2022-07-03	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.66	0.0	0.04	16.54	0.00	2.187	8.89	0.00	0.0	100.0	0.0	4.22	1.00	0.77	0.89	—	12915	1575	105	0	0	0	0	logfile
✔	7RZS	24776	2022-07-02	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.43	0.0	0.04	15.95	0.00	2.318	4.66	0.71	0.0	100.0	0.0	5.82	1.18	0.78	0.81	1.27	2445	324	6	0	0	0	0	logfile
✔	7RZQ	24774	2022-07-02	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	7R6M	24282	2022-07-03	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	6LHV	0900	2022-07-04	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.009	1.36	0.0	0.05	6.54	0.00	2.055	51.70	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6LHW	0901	2022-07-04	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.037	44.10	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6oEF	20020	2022-07-08	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.198	8.14	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6WKY	21813	2022-07-03	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.94	0.0	0.05	15.75	0.00	2.311	20.60	0.00	0.2	99.8	0.0	-1.99	1.44	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6oVH	20212	2022-07-03	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.002	0.72	0.0	0.04	18.70	0.00	2.068	2.87	0.19	0.2	99.8	0.0	3.27	0.99	0.77	0.88	3.42	10895	1272	36	0	68	171	0	logfile
✔	6VSC	21376	2022-07-03	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.56	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.75	0.0	0.05	18.24	0.01	2.083	17.19	3.77	0.2	99.7	0.1	0.63	1.23	0.86	0.84	3.28	9670	1175	5	0	0	0	0	logfile
✔	6WL9	21818	2022-07-05	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.88	0.0	0.05	13.49	0.00	2.197	19.25	0.09	0.2	99.8	0.0	2.25	1.51	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	7TiK	25912	2022-07-02	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.80	1.38	2565	339	6	0	0	0	0	logfile
✔	7N0L	24108	2022-07-03	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	13.40	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.003	0.70	0.0	0.04	21.23	0.00	2.185	11.86	4.06	0.3	99.7	0.0	2.11	1.26	0.55	0.81	2.04	5270	626	4	0	2	0	0	logfile
✔	6WL0	21814	2022-07-03	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6XZC	10658	2022-07-03	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.37	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.004	0.63	0.0	0.03	15.35	0.01	2.178	6.15	0.29	0.4	99.6	0.0	5.09	1.10	0.74	0.86	0.86	13279	1694	7	0	0	0	0	logfile

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