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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PoM | 20416 | 2022-04-04 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.24 | 0.0 | 0.06 | 21.39 | 0.01 | 1.928 | 58.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.75 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2022-04-05 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 7EZ2 | 31386 | 2022-04-04 | 2021-06-01 | 3.05 | 2.80 | — | 3.0 | 0.005 | 0.56 | 0.0 | 0.03 | 13.90 | 0.00 | 1.809 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.69 | 0.81 | — | 3.0 | 0.007 | 0.84 | 0.0 | 0.05 | 15.80 | 0.01 | 1.754 | 7.27 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.04 | 0.73 | 0.87 | — | 8698 | 0 | 3 | 406 | 31 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2022-04-09 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.21 | 0.0 | 0.05 | 6.00 | 0.00 | 2.198 | 8.14 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.49 | 0.80 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-04-04 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6X5i | 22051 | 2022-04-04 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.061 | 3.24 | 210.0 | 0.20 | 32.42 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.010 | 1.61 | 210.0 | 0.14 | 27.26 | 0.00 | 1.233 | 70.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.50 | 0.68 | 0.73 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 6VSC | 21376 | 2022-04-04 | 2020-02-11 | 2.6 | 2.97 | — | 2.9 | 0.014 | 2.41 | 75.0 | 0.15 | 18.44 | 0.01 | 2.153 | 16.30 | 7.73 | 3.9 | 96.1 | 0.0 | -1.96 | 0.91 | 0.90 | 3.76 | 2.9 | 0.004 | 0.75 | 0.0 | 0.05 | 18.24 | 0.01 | 2.083 | 17.03 | 3.77 | 0.2 | 99.7 | 0.1 | 0.63 | 1.23 | 0.86 | 0.84 | 3.28 | 9670 | 1175 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oVH | 20212 | 2022-04-05 | 2019-05-07 | 2.6 | 2.81 | 2.71 | 2.8 | 0.014 | 1.10 | 0.0 | 0.04 | 17.48 | 0.01 | 1.203 | 1.15 | 4.55 | 1.0 | 99.0 | 0.0 | -6.34 | 0.75 | 0.87 | 4.63 | 2.8 | 0.002 | 0.72 | 0.0 | 0.04 | 18.70 | 0.00 | 2.068 | 2.87 | 0.19 | 0.2 | 99.8 | 0.0 | 3.27 | 0.99 | 0.77 | 0.88 | 3.42 | 10895 | 1272 | 36 | 0 | 68 | 171 | 0 | logfile |
✔ | 6WKY | 21813 | 2022-04-04 | 2020-04-17 | 4.2 | 4.29 | — | 4.1 | 0.006 | 0.74 | 0.0 | 0.05 | 16.88 | 0.00 | 2.366 | 8.91 | 0.00 | 0.6 | 99.4 | 0.0 | -5.20 | 0.76 | 0.88 | — | 4.1 | 0.004 | 0.94 | 0.0 | 0.05 | 15.75 | 0.00 | 2.311 | 20.60 | 0.00 | 0.2 | 99.8 | 0.0 | -1.99 | 1.44 | 0.75 | 0.86 | — | 9140 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL9 | 21818 | 2022-04-06 | 2020-04-18 | 4.2 | 4.68 | — | 4.4 | 0.006 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.052 | 24.33 | 0.00 | 1.9 | 98.1 | 0.0 | 1.21 | 0.74 | 0.87 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.05 | 13.49 | 0.00 | 2.197 | 19.25 | 0.09 | 0.2 | 99.8 | 0.0 | 2.25 | 1.51 | 0.73 | 0.86 | — | 23400 | 3016 | 104 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N0L | 24108 | 2022-04-04 | 2021-05-25 | 2.8 | 2.17 | — | 3.1 | 0.065 | 1.95 | 0.0 | 0.04 | 21.58 | 0.00 | 1.675 | 13.40 | 9.23 | 2.0 | 98.0 | 0.0 | -6.10 | 0.56 | 0.80 | 3.16 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 21.23 | 0.00 | 2.185 | 11.86 | 4.06 | 0.3 | 99.7 | 0.0 | 2.11 | 1.26 | 0.55 | 0.81 | 2.04 | 5270 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6XZC | 10658 | 2022-04-05 | 2020-02-03 | 3.37 | 3.56 | 3.37 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.50 | 0.01 | 2.323 | 2.10 | 3.06 | 1.7 | 98.3 | 0.0 | -1.92 | 0.66 | 0.74 | 0.86 | 3.6 | 0.004 | 0.63 | 0.0 | 0.03 | 15.35 | 0.01 | 2.178 | 5.65 | 0.29 | 0.4 | 99.6 | 0.0 | 5.09 | 1.10 | 0.74 | 0.86 | 0.86 | 13279 | 1694 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LRC | 23494 | 2022-04-04 | 2021-02-16 | 2.97 | 4.17 | 2.92 | 3.5 | 0.006 | 0.48 | 0.0 | 0.04 | 7.93 | 0.01 | 1.795 | 5.33 | 0.30 | 0.8 | 99.2 | 0.0 | 3.49 | 0.72 | 0.74 | 3.03 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 11.41 | 0.00 | 2.042 | 8.52 | 0.90 | 0.4 | 99.6 | 0.0 | 3.60 | 0.55 | 0.76 | 0.85 | 2.96 | 6202 | 762 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6WL0 | 21814 | 2022-04-05 | 2020-04-17 | 4.4 | 4.62 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 18.91 | 0.00 | 2.353 | 8.18 | 0.00 | 0.0 | 100.0 | 0.0 | -5.48 | 0.79 | 0.88 | — | 4.4 | 0.005 | 0.97 | 0.0 | 0.04 | 14.48 | 0.00 | 2.146 | 21.73 | 0.09 | 0.4 | 99.6 | 0.0 | 0.45 | 1.67 | 0.79 | 0.85 | — | 11480 | 1476 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L3U | 0826 | 2022-04-06 | 2019-10-15 | 2.53 | 2.59 | 2.48 | 2.6 | 0.012 | 0.93 | 0.0 | 0.05 | 17.70 | 0.01 | 2.206 | 0.45 | 3.01 | 1.9 | 98.1 | 0.0 | -2.86 | 0.64 | 0.84 | 4.02 | 2.6 | 0.002 | 0.52 | 0.0 | 0.03 | 16.91 | 0.00 | 1.987 | 2.29 | 1.51 | 0.4 | 99.6 | 0.0 | 2.74 | 2.33 | 0.65 | 0.86 | 2.83 | 19698 | 1206 | 18 | 0 | 12 | 174 | 9588 | logfile |
✔ | 6L3V | 0827 | 2022-04-06 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.011 | 0.89 | 0.0 | 0.04 | 17.00 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.002 | 0.58 | 0.0 | 0.03 | 16.57 | 0.00 | 2.198 | 2.61 | 1.21 | 0.5 | 99.5 | 0.0 | 2.37 | 3.59 | 0.59 | 0.87 | 2.85 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 6MRT | 9212 | 2022-04-04 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.87 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CG7 | 30351 | 2022-04-09 | 2020-06-30 | 3.61 | 3.98 | — | 3.9 | 0.005 | 0.66 | 0.0 | 0.04 | 12.61 | 0.00 | 2.027 | 9.40 | 2.26 | 5.6 | 94.4 | 0.0 | -2.97 | 0.77 | 0.82 | 1.47 | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 15.70 | 0.00 | 2.122 | 12.05 | 0.46 | 0.5 | 99.5 | 0.0 | 0.17 | 1.50 | 0.76 | 0.81 | 1.71 | 40290 | 5100 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL8 | 21817 | 2022-04-07 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 14.63 | 0.00 | 2.281 | 14.04 | 0.00 | 0.5 | 99.5 | 0.0 | 3.46 | 2.62 | 0.74 | 0.87 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SD4 | 10148 | 2022-04-09 | 2019-07-26 | 2.8 | 3.00 | 2.71 | 2.9 | 0.010 | 0.78 | 0.0 | 0.04 | 12.27 | 0.00 | 2.235 | 7.10 | 0.75 | 9.7 | 89.7 | 0.7 | -4.67 | 0.78 | 0.85 | 5.63 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 17.15 | 0.00 | 2.001 | 7.28 | 1.73 | 0.5 | 99.5 | 0.0 | 0.90 | 0.53 | 0.73 | 0.85 | 4.58 | 40562 | 5134 | 34 | 0 | 0 | 0 | 0 | logfile |