Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PoM	20416	2022-04-04	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.24	0.0	0.06	21.39	0.01	1.928	58.97	0.00	0.0	0.0	0.0	—	1.75	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	6X64	22069	2022-04-05	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.24	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7EZ2	31386	2022-04-04	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.27	0.00	0.0	0.0	0.0	—	1.04	0.73	0.87	—	8698	0	3	406	31	0	0	logfile
✔	6oEF	20020	2022-04-09	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.198	8.14	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6UES	20755	2022-04-04	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6X5i	22051	2022-04-04	2020-05-26	4.3	4.27	—	4.0	0.061	3.24	210.0	0.20	32.42	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.61	210.0	0.14	27.26	0.00	1.233	70.93	0.00	0.0	0.0	0.0	—	3.50	0.68	0.73	—	4480	70	70	0	280	0	0	logfile
✔	6VSC	21376	2022-04-04	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.30	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.75	0.0	0.05	18.24	0.01	2.083	17.03	3.77	0.2	99.7	0.1	0.63	1.23	0.86	0.84	3.28	9670	1175	5	0	0	0	0	logfile
✔	6oVH	20212	2022-04-05	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.002	0.72	0.0	0.04	18.70	0.00	2.068	2.87	0.19	0.2	99.8	0.0	3.27	0.99	0.77	0.88	3.42	10895	1272	36	0	68	171	0	logfile
✔	6WKY	21813	2022-04-04	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.94	0.0	0.05	15.75	0.00	2.311	20.60	0.00	0.2	99.8	0.0	-1.99	1.44	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6WL9	21818	2022-04-06	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.88	0.0	0.05	13.49	0.00	2.197	19.25	0.09	0.2	99.8	0.0	2.25	1.51	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	7N0L	24108	2022-04-04	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	13.40	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.003	0.70	0.0	0.04	21.23	0.00	2.185	11.86	4.06	0.3	99.7	0.0	2.11	1.26	0.55	0.81	2.04	5270	626	4	0	2	0	0	logfile
✔	6XZC	10658	2022-04-05	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.004	0.63	0.0	0.03	15.35	0.01	2.178	5.65	0.29	0.4	99.6	0.0	5.09	1.10	0.74	0.86	0.86	13279	1694	7	0	0	0	0	logfile
✔	7LRC	23494	2022-04-04	2021-02-16	2.97	4.17	2.92	3.5	0.006	0.48	0.0	0.04	7.93	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.57	0.0	0.04	11.41	0.00	2.042	8.52	0.90	0.4	99.6	0.0	3.60	0.55	0.76	0.85	2.96	6202	762	6	0	6	0	0	logfile
✔	6WL0	21814	2022-04-05	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6L3U	0826	2022-04-06	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.93	0.0	0.05	17.70	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.52	0.0	0.03	16.91	0.00	1.987	2.29	1.51	0.4	99.6	0.0	2.74	2.33	0.65	0.86	2.83	19698	1206	18	0	12	174	9588	logfile
✔	6L3V	0827	2022-04-06	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.89	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.57	0.00	2.198	2.61	1.21	0.5	99.5	0.0	2.37	3.59	0.59	0.87	2.85	19416	1206	12	0	6	0	9528	logfile
✔	6MRT	9212	2022-04-04	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	7CG7	30351	2022-04-09	2020-06-30	3.61	3.98	—	3.9	0.005	0.66	0.0	0.04	12.61	0.00	2.027	9.40	2.26	5.6	94.4	0.0	-2.97	0.77	0.82	1.47	3.9	0.004	0.62	0.0	0.04	15.70	0.00	2.122	12.05	0.46	0.5	99.5	0.0	0.17	1.50	0.76	0.81	1.71	40290	5100	34	0	0	0	0	logfile
✔	6WL8	21817	2022-04-07	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.76	0.0	0.04	14.63	0.00	2.281	14.04	0.00	0.5	99.5	0.0	3.46	2.62	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✔	6SD4	10148	2022-04-09	2019-07-26	2.8	3.00	2.71	2.9	0.010	0.78	0.0	0.04	12.27	0.00	2.235	7.10	0.75	9.7	89.7	0.7	-4.67	0.78	0.85	5.63	2.9	0.003	0.63	0.0	0.04	17.15	0.00	2.001	7.28	1.73	0.5	99.5	0.0	0.90	0.53	0.73	0.85	4.58	40562	5134	34	0	0	0	0	logfile

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