Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TUQ	10594	2021-04-02	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.67	0.0	0.04	9.98	0.00	2.231	9.62	0.00	0.1	99.9	0.0	-0.60	1.69	0.68	0.87	0.85	16100	2300	50	0	0	0	0	logfile
✔	6RVV	4443	2021-04-04	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.004	0.59	0.0	0.05	14.76	0.00	2.089	9.78	0.07	0.1	99.9	0.0	-0.83	1.01	0.80	0.83	3.40	110208	14520	384	0	120	0	0	logfile
✔	6WL8	21817	2021-04-03	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.73	0.0	0.04	13.48	0.00	2.150	10.56	0.00	0.1	99.9	0.0	4.37	1.81	0.74	0.86	—	23850	3074	106	0	0	0	0	logfile
✔	6WL7	21816	2021-04-04	2020-04-18	3.8	4.18	—	3.9	0.006	0.58	0.0	0.04	14.93	0.00	2.204	8.45	0.00	1.2	98.8	0.0	3.28	0.79	0.87	2.36	3.8	0.004	0.70	0.0	0.04	13.90	0.00	2.152	11.38	0.00	0.1	99.9	0.0	4.93	2.55	0.79	0.86	2.35	34350	4350	150	0	0	0	0	logfile
✔	6WL0	21814	2021-04-01	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.004	1.03	0.0	0.04	14.80	0.00	2.178	19.36	0.00	0.2	99.8	0.0	0.87	1.70	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6A7F	6993	2021-04-01	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.64	0.0	0.04	14.19	0.00	2.274	12.37	0.00	0.3	99.7	0.0	2.53	2.06	0.60	0.86	-0.22	10830	1410	30	0	0	0	0	logfile
✔	6WKY	21813	2021-04-01	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.91	0.0	0.04	15.42	0.00	2.341	18.04	0.00	0.4	99.6	0.0	-1.66	3.30	0.75	0.85	—	9140	1160	40	0	0	0	0	logfile
✔	6MRT	9212	2021-04-05	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.002	0.45	0.0	0.03	12.64	0.00	2.210	3.51	0.00	0.4	99.6	0.0	5.53	3.07	0.72	0.85	2.36	26868	3420	12	0	0	0	0	logfile
✔	6WQ0	21867	2021-04-05	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.003	0.55	0.0	0.03	13.66	0.00	2.283	4.12	0.15	0.4	99.6	0.0	3.33	0.30	0.57	0.89	3.58	57467	6026	48	602	0	0	0	logfile
✔	6MRU	9213	2021-04-05	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.44	0.0	0.03	12.24	0.00	2.210	3.00	0.00	0.5	99.5	0.0	5.89	3.08	0.75	0.85	1.81	29107	3705	13	0	0	0	0	logfile
✔	6VSA	21373	2021-04-01	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	12.84	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.005	0.61	0.0	0.04	17.59	0.00	2.154	11.22	1.55	0.5	99.4	0.1	1.39	0.89	0.93	0.90	4.60	9712	1175	10	0	0	42	0	logfile
✔	7JSV	22460	2021-04-02	2020-08-16	3.9	3.98	—	4.0	0.019	1.51	0.0	0.10	10.55	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.003	0.63	0.0	0.03	13.85	0.00	2.150	8.70	0.00	0.5	99.5	0.0	0.54	0.93	0.64	0.83	2.94	22140	2706	82	0	41	0	0	logfile
✔	6RVW	4444	2021-04-04	2019-06-03	3.7	3.98	—	3.9	0.008	0.66	0.0	0.05	14.12	0.00	2.263	1.75	0.00	2.0	98.0	0.0	-2.37	0.79	0.82	2.87	4.0	0.003	0.60	0.0	0.05	14.34	0.00	2.043	8.33	0.09	0.5	99.5	0.0	-0.80	2.03	0.80	0.83	3.68	110208	14520	384	0	120	0	0	logfile
✔	6UPH	20839	2021-04-01	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.16	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.004	0.60	0.0	0.04	26.56	0.00	2.118	4.38	0.16	0.6	99.4	0.0	1.17	0.38	0.69	0.87	2.98	10677	732	10	238	0	0	0	logfile
✔	6XZC	10658	2021-04-02	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.002	0.51	0.0	0.03	13.57	0.00	2.200	5.65	0.00	0.7	99.3	0.0	5.16	1.09	0.76	0.86	1.36	13279	1694	7	0	0	0	0	logfile
✔	6L3V	0827	2021-04-02	2019-10-15	2.63	2.90	2.72	2.9	0.010	0.92	0.0	0.04	16.68	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.62	0.0	0.03	13.96	0.01	2.070	2.86	0.00	0.7	99.3	0.0	2.11	3.69	0.59	0.86	3.22	19416	1206	12	0	6	0	9528	logfile
✔	6E8G	9005	2021-04-03	2018-07-29	2.9	3.09	2.96	3.0	0.006	0.89	0.0	0.05	10.62	0.01	2.201	2.53	0.34	0.9	99.1	0.0	-1.52	0.59	0.84	2.92	3.0	0.004	0.59	0.0	0.04	12.90	0.00	2.158	9.00	0.00	0.7	99.3	0.0	3.79	1.64	0.60	0.87	2.14	97272	12276	72	0	0	0	0	logfile
✔	6VSC	21376	2021-04-01	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.09	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.005	0.69	0.0	0.05	12.96	0.01	2.073	16.72	0.00	0.7	99.3	0.0	0.41	2.20	0.87	0.84	3.83	9670	1175	5	0	0	0	0	logfile
✔	6NHT	9373	2021-04-03	2018-12-23	2.9	3.26	3.11	3.3	0.006	0.75	0.0	0.04	15.21	0.00	2.394	2.27	0.45	2.1	97.9	0.0	-5.86	0.68	0.85	2.73	3.3	0.002	0.52	0.0	0.04	12.44	0.00	2.202	2.95	0.00	0.8	99.2	0.0	1.86	1.59	0.64	0.84	2.74	26136	3432	24	0	0	0	0	logfile
✔	7KoG	22975	2021-04-02	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.18	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	3.8	0.003	0.79	0.0	0.04	16.88	0.00	2.126	12.90	0.05	0.8	99.2	0.0	2.83	2.19	0.73	0.68	—	17384	2154	2	0	0	0	0	logfile

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