Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WL0	21814	2021-06-02	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.004	1.03	0.0	0.04	14.80	0.00	2.178	19.36	0.00	0.2	99.8	0.0	0.87	1.70	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6TUQ	10594	2021-06-02	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.72	0.0	0.04	12.41	0.00	2.368	12.09	0.06	0.4	99.6	0.0	-0.47	0.88	0.68	0.88	0.90	16100	2300	50	0	0	0	0	logfile
✔	6MRT	9212	2021-06-05	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.38	0.00	2.229	2.75	1.26	0.4	99.6	0.0	5.51	3.07	0.73	0.86	2.25	26868	3420	12	0	0	0	0	logfile
✔	6WKY	21813	2021-06-01	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.91	0.0	0.04	15.42	0.00	2.341	18.04	0.00	0.4	99.6	0.0	-1.66	3.30	0.75	0.85	—	9140	1160	40	0	0	0	0	logfile
✔	6ZBJ	11156	2021-06-04	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.002	0.49	0.0	0.03	15.38	0.00	2.080	3.57	0.00	0.5	99.5	0.0	3.97	1.36	0.88	0.83	1.31	39212	2334	4	0	0	0	19864	logfile
✔	6L3U	0826	2021-06-03	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.95	0.0	0.05	17.90	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.53	0.0	0.03	16.73	0.00	1.969	2.04	1.31	0.5	99.5	0.0	2.78	0.94	0.64	0.85	3.01	19698	1206	18	0	12	174	9588	logfile
✔	6L3V	0827	2021-06-03	2019-10-15	2.63	2.90	2.72	2.9	0.010	0.92	0.0	0.04	16.68	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.61	0.0	0.03	16.29	0.00	2.184	2.81	1.62	0.5	99.5	0.0	2.29	3.59	0.59	0.87	2.74	19416	1206	12	0	6	0	9528	logfile
✔	6VSA	21373	2021-06-02	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	12.84	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.005	0.61	0.0	0.04	17.59	0.00	2.154	11.22	1.55	0.5	99.4	0.1	1.39	0.89	0.93	0.90	4.60	9712	1175	10	0	0	42	0	logfile
✔	7JSV	22460	2021-06-03	2020-08-16	3.9	3.98	—	4.0	0.019	1.51	0.0	0.10	10.55	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.76	0.0	0.04	16.05	0.00	2.149	11.34	0.33	0.6	99.4	0.0	0.32	0.94	0.64	0.83	2.66	22140	2706	82	0	41	0	0	logfile
✔	6VSC	21376	2021-06-02	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.09	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.78	0.0	0.05	18.50	0.01	2.031	17.66	3.67	0.6	99.3	0.1	0.37	1.21	0.87	0.84	3.40	9670	1175	5	0	0	0	0	logfile
✔	6MRU	9213	2021-06-05	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.47	0.0	0.03	13.45	0.00	2.200	3.24	0.03	0.6	99.4	0.0	5.43	3.90	0.76	0.86	1.92	29107	3705	13	0	0	0	0	logfile
✔	6E8G	9005	2021-06-03	2018-07-29	2.9	3.09	2.96	3.0	0.006	0.89	0.0	0.05	10.62	0.01	2.201	2.53	0.34	0.9	99.1	0.0	-1.52	0.59	0.84	2.92	3.0	0.003	0.60	0.0	0.04	17.88	0.00	2.165	9.76	2.04	0.7	99.3	0.0	4.64	1.40	0.59	0.86	1.45	97272	12276	72	0	0	0	0	logfile
✔	6L3T	0825	2021-06-03	2019-10-15	2.34	2.41	2.27	2.4	0.011	1.07	0.0	0.05	16.88	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.59	0.0	0.03	16.28	0.00	1.929	2.64	1.41	0.8	99.2	0.0	2.99	3.48	0.67	0.86	4.09	19722	1206	18	0	6	204	9588	logfile
✔	6WQ0	21867	2021-06-05	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.004	0.59	0.0	0.04	15.01	0.00	2.270	3.87	0.95	0.8	99.2	0.0	3.24	1.11	0.58	0.90	3.69	57467	6026	48	602	0	0	0	logfile
✔	7KoG	22975	2021-06-02	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.18	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	3.8	0.003	0.79	0.0	0.04	16.88	0.00	2.126	12.90	0.05	0.8	99.2	0.0	2.83	2.19	0.73	0.68	—	17384	2154	2	0	0	0	0	logfile
✔	7CG7	30351	2021-06-04	2020-06-30	3.61	3.98	—	3.9	0.005	0.66	0.0	0.04	12.61	0.00	2.027	9.40	2.26	5.6	94.4	0.0	-2.97	0.77	0.82	1.47	3.9	0.004	0.64	0.0	0.04	15.91	0.00	2.152	12.72	0.51	0.8	99.2	0.0	-0.35	1.51	0.77	0.81	1.65	40290	5100	34	0	0	0	0	logfile
✔	6XZC	10658	2021-06-02	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.002	0.52	0.0	0.03	15.40	0.00	2.218	4.81	0.07	0.8	99.2	0.0	5.23	1.08	0.77	0.86	0.73	13279	1694	7	0	0	0	0	logfile
✔	7JLW	22382	2021-06-05	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.05	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.002	0.49	0.0	0.04	15.54	0.00	2.070	6.97	1.28	0.8	99.2	0.0	3.29	0.77	0.65	0.85	4.08	40284	2316	36	0	132	204	18720	logfile
✔	6SD1	10145	2021-06-04	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.44	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	2.7	0.005	0.59	0.0	0.04	16.70	0.00	2.155	8.76	1.42	0.9	99.1	0.0	1.99	0.66	0.77	0.86	4.48	39369	4983	33	0	0	0	0	logfile
✔	7JJP	22358	2021-06-05	2020-07-27	1.94	2.15	2.08	2.1	0.011	1.21	0.0	0.07	14.56	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.002	0.54	0.0	0.04	14.98	0.00	2.108	7.63	0.61	0.9	99.1	0.0	3.79	0.93	0.72	0.87	4.90	40920	2352	36	0	180	396	19104	logfile

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