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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8Q2K | 18111 | 2024-03-11 | 2023-08-02 | 2.88 | 2.65 | 2.79 | 2.8 | 0.011 | 1.80 | 0.0 | 0.07 | 10.49 | 0.01 | 2.538 | 0.43 | 0.00 | 4.1 | 95.9 | 0.0 | -1.81 | 0.28 | 0.75 | 5.37 | 2.8 | 0.003 | 0.51 | 0.0 | 0.05 | 17.02 | 0.00 | 2.146 | 0.85 | 0.51 | 0.0 | 100.0 | 0.0 | -1.78 | 3.23 | 0.38 | 0.85 | 4.69 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 7YC8 | 33736 | 2024-03-11 | 2022-07-01 | 4.14 | 7.25 | 4.31 | 4.1 | 0.002 | 0.51 | 0.0 | 0.02 | 25.12 | 0.00 | 2.079 | 18.05 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.96 | 0.87 | — | 4.1 | 0.006 | 0.81 | 0.0 | 0.04 | 27.57 | 0.01 | 1.977 | 68.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.24 | 0.97 | 0.89 | — | 8335 | 0 | 1 | 388 | 1 | 0 | 0 | logfile |
✔ | 7UGD | 26487 | 2024-03-10 | 2022-03-24 | 2.95 | 3.61 | 2.95 | 3.5 | 0.002 | 0.45 | 0.0 | 0.04 | 11.38 | 0.00 | 2.005 | 2.21 | 0.00 | 0.7 | 99.3 | 0.0 | 0.34 | 0.49 | 0.84 | 3.05 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 14.40 | 0.00 | 2.229 | 2.85 | 1.56 | 0.0 | 100.0 | 0.0 | 2.56 | 0.44 | 0.50 | 0.85 | 1.91 | 3079 | 415 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 8TJV | 41312 | 2024-03-14 | 2023-07-24 | 2.99 | 3.53 | 2.99 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 24.19 | 0.00 | 1.526 | 10.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.89 | — | 3.1 | 0.008 | 0.70 | 0.0 | 0.04 | 23.53 | 0.01 | 1.086 | 12.37 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.92 | 0.92 | — | 8778 | 0 | 2 | 409 | 32 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2024-03-16 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 22.50 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 28.52 | 0.01 | 1.951 | 72.85 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.98 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2024-03-10 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 25.63 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.23 | 0.0 | 0.06 | 27.09 | 0.01 | 1.945 | 59.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.74 | 0.79 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 7RX5 | 24725 | 2024-03-14 | 2021-08-21 | 3.4 | 3.65 | — | 3.6 | 0.002 | 0.25 | 0.0 | 0.03 | 11.98 | 0.00 | 2.288 | 5.05 | 0.00 | 0.0 | 100.0 | 0.0 | 4.54 | 0.70 | 0.85 | 3.58 | 3.6 | 0.002 | 0.33 | 0.0 | 0.03 | 13.43 | 0.00 | 2.264 | 5.87 | 0.00 | 0.0 | 100.0 | 0.0 | 5.24 | 0.23 | 0.71 | 0.87 | 2.92 | 9120 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL1 | 21815 | 2024-03-16 | 2020-04-17 | 4.0 | 4.02 | — | 4.0 | 0.007 | 0.81 | 0.0 | 0.05 | 7.85 | 0.00 | 2.413 | 3.17 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.71 | 0.85 | — | 4.0 | 0.003 | 0.48 | 0.0 | 0.03 | 16.55 | 0.00 | 2.272 | 7.01 | 4.66 | 0.0 | 100.0 | 0.0 | 6.35 | 0.72 | 0.72 | 0.86 | — | 14612 | 1872 | 52 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TJX | 41313 | 2024-03-11 | 2023-07-24 | 2.44 | 3.10 | 2.65 | 2.9 | 0.006 | 0.64 | 0.0 | 0.04 | 24.81 | 0.01 | 1.872 | 12.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.85 | — | 2.9 | 0.007 | 0.61 | 0.0 | 0.04 | 24.05 | 0.01 | 1.838 | 11.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.84 | 0.86 | — | 7839 | 0 | 2 | 365 | 27 | 0 | 0 | logfile |
✔ | 8TJU | 41311 | 2024-03-14 | 2023-07-24 | 3.46 | 4.75 | 3.48 | 3.4 | 0.006 | 0.67 | 0.0 | 0.04 | 25.59 | 0.01 | 1.874 | 27.33 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.86 | — | 3.4 | 0.008 | 0.70 | 0.0 | 0.04 | 24.91 | 0.01 | 1.784 | 28.62 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.94 | 0.91 | — | 8771 | 0 | 2 | 409 | 27 | 0 | 0 | logfile |
✔ | 7T6E | 25714 | 2024-03-10 | 2021-12-13 | 3.1 | 3.11 | — | 3.1 | 0.129 | 5.90 | 125.0 | 0.23 | 23.20 | 0.02 | 2.041 | 30.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.87 | — | 3.1 | 0.122 | 5.61 | 134.0 | 0.36 | 21.80 | 0.02 | 2.082 | 31.46 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.66 | 0.90 | — | 3480 | 0 | 60 | 0 | 300 | 0 | 0 | logfile |
✔ | 7RX4 | 24724 | 2024-03-16 | 2021-08-21 | 3.8 | 3.99 | — | 4.0 | 0.003 | 0.49 | 0.0 | 0.04 | 13.38 | 0.00 | 1.928 | 12.86 | 0.00 | 0.0 | 100.0 | 0.0 | 6.26 | 0.60 | 0.78 | 1.41 | 3.9 | 0.003 | 0.51 | 0.0 | 0.04 | 16.86 | 0.00 | 2.341 | 5.40 | 3.97 | 0.0 | 100.0 | 0.0 | 6.10 | 0.47 | 0.61 | 0.80 | 0.95 | 13560 | 1740 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oHi | 16881 | 2024-03-10 | 2023-03-21 | 2.8 | 2.22 | 2.71 | 2.8 | 0.014 | 1.16 | 0.0 | 1.29 | 32.53 | 0.00 | 2.311 | 1.80 | 1.52 | 1.7 | 98.3 | 0.0 | -2.86 | 0.49 | 0.87 | 6.35 | 2.8 | 0.005 | 0.69 | 0.0 | 0.09 | 21.38 | 0.00 | 2.240 | 3.60 | 4.04 | 0.0 | 100.0 | 0.0 | -2.14 | 1.42 | 0.48 | 0.86 | 5.91 | 2088 | 234 | 18 | 0 | 18 | 0 | 0 | logfile |
✔ | 6WL9 | 21818 | 2024-03-19 | 2020-04-18 | 4.2 | 4.68 | — | 4.4 | 0.006 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.052 | 24.33 | 0.00 | 1.9 | 98.1 | 0.0 | 1.21 | 0.74 | 0.87 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 15.01 | 0.00 | 2.221 | 14.15 | 0.00 | 0.0 | 100.0 | 0.0 | 2.92 | 1.82 | 0.73 | 0.86 | — | 23400 | 3016 | 104 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QV6 | 14168 | 2024-03-10 | 2022-01-19 | 3.5 | 3.33 | 3.32 | 3.5 | 0.011 | 0.59 | 0.0 | 0.05 | 11.56 | 0.00 | 2.480 | 1.86 | 0.00 | 1.1 | 98.9 | 0.0 | -1.85 | 0.39 | 0.86 | 5.72 | 3.5 | 0.002 | 0.40 | 0.0 | 0.06 | 11.88 | 0.00 | 2.320 | 1.65 | 0.79 | 0.0 | 100.0 | 0.0 | 0.64 | 0.40 | 0.40 | 0.86 | 5.54 | 4842 | 306 | 18 | 0 | 0 | 0 | 2556 | logfile |
✔ | 6WL7 | 21816 | 2024-03-22 | 2020-04-18 | 3.8 | 4.18 | — | 3.9 | 0.006 | 0.58 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 8.50 | 0.00 | 1.2 | 98.8 | 0.0 | 3.28 | 0.79 | 0.87 | 2.36 | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 17.52 | 0.00 | 2.175 | 13.92 | 6.51 | 0.0 | 100.0 | 0.0 | 5.90 | 1.40 | 0.79 | 0.87 | 1.96 | 34350 | 4350 | 150 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WKX | 21812 | 2024-03-15 | 2020-04-17 | 4.2 | 4.31 | — | 4.2 | 0.006 | 0.59 | 0.0 | 0.04 | 15.11 | 0.00 | 2.298 | 2.52 | 0.00 | 0.0 | 100.0 | 0.0 | -3.67 | 0.77 | 0.90 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 16.66 | 0.00 | 2.199 | 7.21 | 0.00 | 0.0 | 100.0 | 0.0 | 4.60 | 0.98 | 0.77 | 0.88 | — | 12915 | 1575 | 105 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DST | 27688 | 2024-03-10 | 2022-07-22 | 3.2 | 2.71 | 2.73 | 3.4 | 0.046 | 2.10 | 0.0 | 0.03 | 22.27 | 0.00 | 2.205 | 41.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.44 | 0.57 | — | 2.4 | 0.136 | 9.30 | 191.0 | 0.34 | 28.93 | 0.03 | 1.065 | 133.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.16 | 0.55 | 0.80 | — | 3078 | 0 | 54 | 0 | 270 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2024-03-10 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 26.31 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 27.66 | 0.01 | 1.797 | 37.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.86 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6SD1 | 10145 | 2024-03-24 | 2019-07-26 | 2.6 | 2.74 | 2.55 | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 12.42 | 0.00 | 2.149 | 8.45 | 0.00 | 4.3 | 95.7 | 0.0 | -2.90 | 0.74 | 0.84 | 4.92 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 16.50 | 0.00 | 2.166 | 8.31 | 1.79 | 0.0 | 100.0 | 0.0 | 2.32 | 0.97 | 0.75 | 0.86 | 4.50 | 39369 | 4983 | 33 | 0 | 0 | 0 | 0 | logfile |