Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R6M	24282	2022-12-11	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7EZ0	31385	2022-12-12	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.69	0.0	0.04	15.71	0.00	1.877	8.66	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	1	387	27	0	0	logfile
✔	7XSN	33428	2022-12-11	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.62	0.0	0.03	16.36	0.00	2.110	21.47	0.00	0.0	0.0	0.0	—	0.27	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	6X5i	22051	2022-12-11	2020-05-26	4.3	4.27	—	4.0	0.060	2.85	210.0	0.16	31.34	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.52	210.0	0.14	25.91	0.00	1.249	62.11	0.00	0.0	0.0	0.0	—	3.32	0.68	0.73	—	4480	70	70	0	280	0	0	logfile
✔	6LHV	0900	2022-12-13	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.009	1.36	0.0	0.05	6.54	0.00	2.055	51.70	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	7R6L	24281	2022-12-11	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.63	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7UR5	26705	2022-12-11	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.006	0.91	0.0	0.05	20.81	0.01	2.000	17.31	0.00	0.0	0.0	0.0	—	1.86	0.08	0.66	—	5709	0	3	270	0	0	0	logfile
✔	7EZ2	31386	2022-12-12	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.22	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	6PoM	20416	2022-12-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.24	0.0	0.06	21.39	0.01	1.928	58.97	0.00	0.0	0.0	0.0	—	1.75	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7ZFW	14704	2022-12-13	2022-04-01	3.8	4.62	3.46	3.0	0.007	0.80	0.0	0.05	17.76	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.88	0.0	0.04	20.35	0.01	1.947	37.81	0.00	0.0	0.0	0.0	—	2.54	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7XSK	33425	2022-12-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.006	0.66	0.0	0.04	18.19	0.01	1.742	27.91	0.00	0.0	0.0	0.0	—	1.08	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7LQF	23484	2022-12-11	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.155	6.38	244.0	0.42	26.01	0.03	1.685	217.36	4.43	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.76	5376	512	64	0	0	0	0	logfile
✔	7LQE	23483	2022-12-11	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.19	239.0	0.38	25.39	0.02	1.743	134.65	4.63	60.4	38.2	1.4	-8.68	1.67	0.65	0.89	2.06	6048	576	72	0	0	0	0	logfile
✔	8AZS	15770	2022-12-12	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.3	0.027	3.71	25.0	0.19	25.02	0.02	1.804	345.70	17.56	51.6	42.5	5.9	-8.21	18.78	0.21	0.21	0.44	9036	1224	36	0	0	0	0	logfile
✔	6S8F	10120	2022-12-18	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.74	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.94	54.0	0.11	17.87	0.02	1.534	186.99	4.25	53.2	44.5	2.4	-7.88	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	6BWi	7299	2022-12-15	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.08	0.01	1.745	22.63	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.98	120.0	0.27	21.86	0.03	1.600	113.08	5.16	46.0	47.5	6.5	-8.66	2.59	0.80	0.86	1.64	23491	2484	8	0	813	0	0	logfile
✔	7LQi	23487	2022-12-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.83	3.83	46.2	53.8	0.0	-7.03	1.54	0.65	0.83	2.47	8400	800	100	0	0	0	0	logfile
✔	7LQH	23486	2022-12-12	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.24	195.0	0.31	24.08	0.02	1.604	112.51	5.21	40.1	59.5	0.3	-8.01	3.49	0.65	0.87	3.36	12096	1152	144	0	0	0	0	logfile
✔	6oDY	20024	2022-12-16	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.40	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.14	0.02	1.749	103.28	3.66	37.9	60.7	1.3	-7.31	1.53	0.69	0.69	1.82	28116	2832	6	0	1326	0	0	logfile
✔	7LQG	23485	2022-12-12	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.37	186.0	0.30	23.68	0.02	1.819	119.87	4.75	35.8	64.2	0.0	-8.04	1.65	0.67	0.86	3.90	12096	1152	144	0	0	0	0	logfile

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