Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B19	7031	2021-04-01	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	15.00	0.00	19.6	80.3	0.1	-5.74	0.74	0.64	—	4.3	0.004	0.92	0.0	0.05	13.51	0.00	1.919	38.02	0.00	31.9	68.1	0.0	-5.51	2.23	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	5LiJ	4054	2021-04-01	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	22.98	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.08	0.0	0.04	9.39	0.00	2.180	10.51	0.00	30.0	70.0	0.0	-5.80	1.51	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	5APM	3137	2021-04-23	2015-09-17	4.3	4.38	—	4.3	0.013	2.09	60.0	0.09	15.01	0.01	0.303	186.45	12.39	22.7	62.6	14.7	-6.71	0.53	0.56	—	4.3	0.006	1.51	2.0	0.06	14.79	0.01	2.008	37.82	0.03	24.8	71.2	4.0	-5.31	4.36	0.59	0.68	—	329400	41880	180	0	0	0	0	logfile
✔	6o9J	0661	2021-04-02	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.010	1.17	4.0	0.06	17.33	0.01	1.070	35.76	0.02	25.3	71.8	2.8	-4.93	2.22	0.80	0.78	0.78	142682	5731	53	4564	0	0	0	logfile
✔	6TNG	10532	2021-04-01	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	10.00	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.03	0.0	0.00	7.60	0.01	2.127	17.88	0.00	25.5	74.4	0.1	-4.07	0.39	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	3JAC	6343	2021-04-02	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	56.86	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.70	0.0	0.07	14.00	0.01	1.903	74.13	0.00	24.0	74.6	1.4	-4.82	3.70	0.52	0.64	—	15741	1716	3	0	1038	0	0	logfile
✔	3LoS	5137	2021-04-05	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.0	0.005	1.23	0.0	0.05	16.28	0.01	2.105	29.24	0.00	20.8	75.3	3.9	-4.27	1.40	0.62	0.56	—	63712	8512	16	0	0	0	0	logfile
✔	6DJP	7939	2021-04-01	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.36	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.99	0.01	2.084	18.47	0.00	24.3	75.6	0.1	-4.33	1.36	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	3J2P	5499	2021-04-01	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	106.12	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.89	1.0	0.04	14.80	0.01	1.950	70.98	0.21	20.7	76.0	3.3	-4.08	1.04	0.39	0.71	1.77	9890	1134	6	0	6	0	1086	logfile
✔	6RTB	4996	2021-04-01	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.007	0.92	0.0	0.06	13.92	0.00	2.167	15.77	0.00	23.6	76.4	0.0	-4.51	0.58	0.65	0.81	4.99	4681	699	10	0	0	0	0	logfile
✔	6RiB	4887	2021-04-02	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.008	1.04	0.0	0.06	14.87	0.01	2.067	29.92	0.00	22.9	77.1	0.0	-5.73	1.99	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6ZYD	11557	2021-04-04	2020-07-31	3.0	3.62	2.76	3.4	0.016	1.10	0.0	0.12	16.70	0.01	2.269	4.82	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.058	2.43	0.0	0.17	15.83	0.02	1.779	46.70	0.00	22.5	77.5	0.0	-5.91	1.45	0.79	0.85	3.96	31423	1792	14	0	476	0	14490	logfile
✔	6oSM	20186	2021-04-01	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.004	1.05	0.0	0.06	13.25	0.00	2.299	17.80	0.00	22.2	77.8	0.0	-4.39	3.40	0.44	0.73	3.04	4100	600	10	0	0	0	0	logfile
✔	6S13	10079	2021-04-11	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.010	1.06	2.0	0.05	21.72	0.01	1.365	39.72	0.16	22.0	77.9	0.1	-4.94	2.83	0.69	0.61	1.33	233957	5608	52	4559	0	0	93218	logfile
✔	6NYM	0546	2021-04-01	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.12	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.1	0.007	0.86	0.0	0.05	11.80	0.00	2.154	20.42	0.00	22.0	78.0	0.0	-4.58	0.58	0.88	0.81	2.41	68664	9000	12	0	0	0	0	logfile
✔	5YYS	6859	2021-04-03	2017-12-11	4.2	4.57	—	4.1	0.016	2.28	0.0	0.10	15.30	0.01	2.201	22.17	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.005	1.21	0.0	0.06	12.77	0.01	2.121	30.34	0.00	21.3	78.1	0.5	-3.44	1.80	0.84	0.68	—	24044	3244	4	0	0	0	0	logfile
✔	3JCD	6549	2021-04-03	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.3	0.007	1.35	0.0	0.06	22.41	0.01	1.437	69.51	0.00	20.6	78.1	1.3	-4.61	4.35	0.77	0.54	0.30	147815	5982	57	4715	0	0	0	logfile
✔	6NYN	0547	2021-04-01	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.53	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.008	0.85	0.0	0.05	11.81	0.00	2.114	19.13	0.00	21.8	78.2	0.0	-4.70	0.54	0.88	0.79	2.34	68664	9000	12	0	0	0	0	logfile
✔	6NYL	0545	2021-04-01	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.29	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.1	0.006	0.81	0.0	0.05	11.87	0.00	2.120	24.36	0.00	21.8	78.2	0.0	-4.59	0.55	0.87	0.74	1.92	68664	9000	12	0	0	0	0	logfile
✔	5HX2	8064	2021-04-07	2016-01-29	3.8	3.23	—	3.8	0.007	1.19	12.0	0.06	10.99	0.01	0.951	39.77	0.75	19.6	76.9	3.6	-5.39	0.65	0.66	2.67	3.7	0.004	0.96	0.0	0.05	11.91	0.01	2.097	15.33	0.00	19.3	78.3	2.3	-3.79	1.51	0.70	0.78	2.27	171672	25134	54	0	0	0	0	logfile

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