Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B19	7031	2021-06-01	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	15.00	0.00	19.6	80.3	0.1	-5.74	0.74	0.64	—	4.3	0.004	0.92	0.0	0.05	13.51	0.00	1.919	38.02	0.00	31.9	68.1	0.0	-5.51	2.23	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	5LiJ	4054	2021-06-01	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	22.98	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.08	0.0	0.04	9.39	0.00	2.180	10.51	0.00	30.0	70.0	0.0	-5.80	1.51	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6o9J	0661	2021-06-02	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.009	1.07	5.0	0.05	17.69	0.01	1.337	31.62	1.73	24.3	73.0	2.7	-4.71	2.20	0.80	0.77	0.44	142682	5731	53	4564	0	0	0	logfile
✔	6oSM	20186	2021-06-01	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.006	1.13	0.0	0.07	15.86	0.00	2.227	22.22	1.22	26.7	73.3	0.0	-5.09	3.40	0.45	0.75	2.33	4100	600	10	0	0	0	0	logfile
✔	7DA4	30622	2021-06-01	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	77.78	0.00	50.0	50.0	0.0	-8.65	0.39	0.65	—	6.9	0.003	0.88	0.0	0.04	11.26	0.00	2.209	21.21	0.00	26.7	73.3	0.0	-6.49	3.06	0.43	0.63	—	507	66	3	0	0	0	0	logfile
✔	6TNG	10532	2021-06-01	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	10.00	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.03	0.0	0.00	7.60	0.01	2.127	17.88	0.00	25.5	74.4	0.1	-4.07	0.39	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	3JAC	6343	2021-06-02	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	56.86	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.70	0.0	0.07	14.00	0.01	1.903	74.13	0.00	24.0	74.6	1.4	-4.82	3.70	0.52	0.64	—	15741	1716	3	0	1038	0	0	logfile
✔	3LoS	5137	2021-06-05	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.0	0.005	1.23	0.0	0.05	16.28	0.01	2.105	29.24	0.00	20.8	75.3	3.9	-4.27	1.40	0.62	0.56	—	63712	8512	16	0	0	0	0	logfile
✔	6DJP	7939	2021-06-01	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.36	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.99	0.01	2.084	18.47	0.00	24.3	75.6	0.1	-4.33	1.36	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	5iPK	8100	2021-06-07	2016-03-09	3.7	3.79	—	3.7	0.011	1.35	0.0	0.06	11.53	0.01	2.067	31.05	0.45	21.6	75.8	2.6	-4.98	0.77	0.76	2.94	3.7	0.005	1.12	0.0	0.05	16.28	0.01	2.053	22.76	0.59	21.4	76.5	2.1	-4.57	0.82	0.77	0.83	2.48	240540	30000	60	0	0	0	0	logfile
✔	6RiB	4887	2021-06-02	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.008	1.04	0.0	0.06	14.87	0.01	2.067	29.92	0.00	22.9	77.1	0.0	-5.73	1.99	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6S13	10079	2021-06-06	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.010	1.01	3.0	0.05	22.29	0.01	1.352	38.35	0.65	22.2	77.7	0.0	-5.04	2.69	0.68	0.59	1.01	233957	5608	52	4559	0	0	93218	logfile
✔	3J2P	5499	2021-06-02	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	106.12	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.87	0.0	0.04	18.05	0.01	1.834	70.02	0.73	19.0	77.8	3.2	-4.20	0.95	0.39	0.72	0.80	9890	1134	6	0	6	0	1086	logfile
✔	6RTB	4996	2021-06-01	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.84	0.0	0.05	16.28	0.00	2.096	16.40	1.09	22.1	77.9	0.0	-4.30	0.87	0.63	0.80	4.15	4681	699	10	0	0	0	0	logfile
✔	5US9	8605	2021-06-08	2017-02-13	3.0	3.25	—	3.2	0.010	1.37	0.0	0.07	10.63	0.01	1.898	35.47	0.00	16.6	80.6	2.8	-4.40	0.71	0.83	4.39	3.2	0.005	1.09	0.0	0.05	16.76	0.01	2.061	21.44	3.44	19.0	78.1	2.8	-3.27	0.73	0.68	0.83	3.57	244620	30480	60	0	0	0	0	logfile
✔	5YYS	6859	2021-06-03	2017-12-11	4.2	4.57	—	4.1	0.016	2.28	0.0	0.10	15.30	0.01	2.201	22.17	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.005	1.21	0.0	0.06	12.77	0.01	2.121	30.34	0.00	21.3	78.1	0.5	-3.44	1.80	0.84	0.68	—	24044	3244	4	0	0	0	0	logfile
✔	6NYN	0547	2021-06-01	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.53	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.008	0.88	0.0	0.05	13.03	0.00	2.123	20.94	0.62	21.6	78.3	0.0	-4.72	1.20	0.88	0.79	2.15	68664	9000	12	0	0	0	0	logfile
✔	6JSi	9882	2021-06-05	2019-04-08	4.7	4.70	—	4.6	0.007	1.49	0.0	0.06	15.33	0.01	2.231	10.63	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.003	0.87	0.0	0.04	12.58	0.01	2.096	14.46	0.00	20.6	78.4	1.1	-3.67	0.77	0.62	0.68	—	62820	5844	9	0	4044	0	0	logfile
✔	5XLo	6729	2021-06-02	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.28	0.29	17.3	81.9	0.8	-6.02	0.58	0.63	0.55	3.9	0.008	1.18	0.0	0.05	17.82	0.01	1.955	26.24	1.18	21.0	78.6	0.4	-4.71	1.67	0.63	0.69	0.75	15413	2073	9	38	0	0	0	logfile
✔	6ZYD	11557	2021-06-04	2020-07-31	3.0	3.62	2.76	3.4	0.016	1.10	0.0	0.12	16.70	0.01	2.269	4.82	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.055	2.31	0.0	0.17	19.28	0.02	1.743	51.61	14.29	21.3	78.7	0.1	-6.10	1.48	0.79	0.85	3.30	31423	1792	14	0	476	0	14490	logfile

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