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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7ZCF | 14629 | 2022-12-11 | 2022-03-28 | 4.0 | 4.23 | 3.97 | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.10 | 0.00 | 2.089 | 10.15 | 0.56 | 14.8 | 85.2 | 0.0 | -2.45 | 0.67 | 0.71 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.05 | 16.19 | 0.00 | 2.107 | 16.14 | 1.12 | 18.8 | 81.2 | 0.0 | -2.94 | 0.61 | 0.70 | 0.78 | — | 3312 | 426 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2022-12-12 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.19 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.006 | 0.92 | 0.0 | 0.05 | 15.37 | 0.01 | 2.082 | 28.44 | 0.00 | 18.6 | 81.3 | 0.1 | -4.32 | 0.71 | 0.72 | 0.67 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2022-12-13 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.80 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.90 | 0.0 | 0.04 | 11.48 | 0.00 | 2.173 | 16.33 | 0.00 | 15.8 | 81.5 | 2.7 | -1.63 | 0.94 | 0.65 | 0.62 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2022-12-11 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.9 | 0.004 | 1.07 | 0.0 | 0.05 | 8.41 | 0.00 | 2.068 | 18.09 | 0.00 | 18.4 | 81.5 | 0.1 | -5.13 | 3.15 | 0.75 | 0.57 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B40 | 7046 | 2022-12-13 | 2017-09-25 | 4.3 | 4.48 | — | 4.4 | 0.007 | 1.13 | 0.0 | 0.06 | 16.61 | 0.01 | 2.269 | 8.14 | 0.00 | 18.8 | 81.0 | 0.2 | -5.22 | 0.76 | 0.70 | — | 4.4 | 0.005 | 0.86 | 0.0 | 0.05 | 17.90 | 0.01 | 2.097 | 21.62 | 0.00 | 18.5 | 81.5 | 0.0 | -3.41 | 2.12 | 0.81 | 0.78 | — | 16202 | 1800 | 12 | 100 | 42 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2022-12-12 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.44 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.004 | 0.88 | 0.0 | 0.05 | 14.71 | 0.01 | 2.101 | 25.46 | 0.00 | 18.3 | 81.6 | 0.1 | -4.95 | 0.63 | 0.63 | 0.61 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2022-12-11 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.3 | 0.007 | 0.96 | 0.0 | 0.05 | 12.41 | 0.00 | 2.193 | 14.37 | 2.50 | 18.3 | 81.7 | 0.0 | -2.16 | 0.76 | 0.61 | 0.55 | 2.86 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2022-12-12 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 25.18 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.17 | 0.00 | 2.087 | 24.33 | 0.00 | 18.3 | 81.7 | 0.1 | -3.59 | 1.39 | 0.74 | 0.73 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DA4 | 30622 | 2022-12-11 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.95 | 0.0 | 0.04 | 11.56 | 0.00 | 2.266 | 19.19 | 0.00 | 18.3 | 81.7 | 0.0 | -5.96 | 3.11 | 0.36 | 0.58 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2022-12-11 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.83 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.91 | 0.0 | 0.05 | 18.86 | 0.00 | 2.102 | 13.65 | 4.61 | 18.2 | 81.8 | 0.0 | -4.30 | 1.96 | 0.37 | 0.63 | 0.33 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q67 | 13854 | 2022-12-11 | 2021-11-05 | 3.37 | 3.41 | 2.44 | 3.4 | 0.020 | 2.21 | 0.0 | 0.14 | 14.47 | 0.01 | 2.280 | 12.16 | 8.00 | 16.1 | 83.9 | 0.0 | -4.98 | 0.51 | 0.71 | 2.52 | 3.5 | 0.003 | 0.89 | 0.0 | 0.04 | 18.34 | 0.00 | 2.105 | 22.53 | 0.73 | 18.2 | 81.8 | 0.0 | -4.85 | 2.31 | 0.44 | 0.68 | 0.65 | 2618 | 363 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EU0 | 3955 | 2022-12-22 | 2017-10-27 | 4.0 | 4.06 | — | 4.0 | 0.005 | 1.08 | 0.0 | 0.06 | 14.27 | 0.01 | 1.879 | 8.48 | 0.53 | 15.4 | 84.3 | 0.3 | -5.25 | 0.72 | 0.66 | — | 4.0 | 0.005 | 0.88 | 0.0 | 0.05 | 18.16 | 0.00 | 1.886 | 19.98 | 0.66 | 17.8 | 82.0 | 0.2 | -2.97 | 2.59 | 0.78 | 0.75 | — | 48918 | 5949 | 28 | 108 | 8 | 0 | 0 | logfile |
✔ | 7SYA | 25521 | 2022-12-22 | 2021-11-24 | 3.5 | 4.86 | 3.47 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 14.93 | 0.00 | 2.087 | 15.83 | 0.11 | 16.5 | 82.7 | 0.8 | -2.66 | 0.79 | 0.73 | 0.85 | 3.3 | 0.003 | 0.73 | 0.0 | 0.04 | 16.60 | 0.00 | 2.194 | 18.26 | 0.22 | 17.1 | 82.2 | 0.7 | -2.31 | 1.00 | 0.79 | 0.74 | 0.89 | 49860 | 6180 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EM4 | 3889 | 2022-12-21 | 2017-10-01 | 4.1 | 4.76 | — | 4.0 | 0.008 | 1.44 | 0.0 | 0.12 | 20.82 | 0.00 | 0.855 | 2.35 | 0.00 | 7.5 | 90.4 | 2.1 | -3.71 | 0.66 | 0.57 | — | 3.9 | 0.004 | 0.88 | 0.0 | 0.04 | 25.28 | 0.00 | 1.958 | 17.38 | 0.00 | 17.6 | 82.2 | 0.1 | -2.11 | 3.15 | 0.80 | 0.63 | — | 45400 | 6013 | 37 | 1779 | 0 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2022-12-16 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.004 | 1.01 | 0.0 | 0.05 | 13.22 | 0.01 | 1.497 | 26.00 | 0.00 | 17.4 | 82.2 | 0.4 | -3.46 | 5.55 | 0.82 | 0.49 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2022-12-13 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.37 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.003 | 1.10 | 0.0 | 0.05 | 12.22 | 0.00 | 1.996 | 18.90 | 0.00 | 17.5 | 82.3 | 0.1 | -3.22 | 1.51 | 0.68 | 0.76 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BoY | 30136 | 2022-12-20 | 2020-03-20 | 3.8 | 3.79 | — | 3.8 | 0.008 | 1.49 | 0.0 | 0.07 | 12.88 | 0.01 | 1.717 | 15.08 | 1.21 | 16.1 | 82.7 | 1.1 | -5.15 | 0.84 | 0.83 | 2.69 | 3.7 | 0.004 | 0.96 | 0.0 | 0.05 | 15.75 | 0.00 | 2.084 | 21.80 | 0.56 | 17.5 | 82.3 | 0.3 | -3.77 | 1.56 | 0.85 | 0.85 | 2.26 | 37794 | 4740 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2022-12-13 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.54 | 0.01 | 2.091 | 23.54 | 0.07 | 17.5 | 82.4 | 0.1 | -3.80 | 1.19 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V47 | 31702 | 2022-12-11 | 2021-08-12 | 2.8 | 2.80 | — | 3.0 | 0.007 | 0.78 | 0.0 | 0.06 | 12.91 | 0.00 | 2.567 | 6.32 | 0.00 | 18.6 | 81.4 | 0.0 | -5.86 | 0.44 | 0.80 | 6.31 | 3.0 | 0.004 | 0.69 | 0.0 | 0.06 | 17.00 | 0.00 | 2.426 | 6.32 | 3.25 | 17.5 | 82.5 | 0.0 | -4.25 | 0.34 | 0.43 | 0.79 | 5.70 | 2484 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oKS | 20103 | 2022-12-13 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.004 | 0.85 | 0.0 | 0.05 | 14.28 | 0.01 | 2.144 | 15.32 | 0.00 | 17.5 | 82.5 | 0.0 | -4.73 | 2.22 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |