Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6EM4	3889	2022-07-07	2017-10-01	4.1	4.76	—	4.0	0.008	1.44	0.0	0.12	20.82	0.00	0.855	4.69	0.00	7.5	90.4	2.1	-3.71	0.66	0.57	—	3.9	0.004	0.88	0.0	0.04	25.28	0.00	1.958	17.41	0.00	17.6	82.2	0.1	-2.11	3.15	0.80	0.63	—	45400	6013	37	1779	0	0	0	logfile
✔	7SYA	25521	2022-07-08	2021-11-24	3.5	4.86	3.47	3.3	0.003	0.69	0.0	0.04	14.93	0.00	2.087	15.83	0.11	16.5	82.7	0.8	-2.66	0.79	0.73	0.85	3.3	0.003	0.73	0.0	0.04	16.60	0.00	2.194	18.26	0.22	17.1	82.2	0.7	-2.31	1.00	0.79	0.74	0.89	49860	6180	12	0	0	0	0	logfile
✔	5XLo	6729	2022-07-04	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.020	1.71	3.0	0.05	17.89	0.01	1.755	29.86	0.07	17.2	82.3	0.5	-4.60	0.83	0.61	0.67	0.81	15413	2073	9	38	0	0	0	logfile
✔	6HDD	0204	2022-07-05	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.00	0.0	0.05	13.37	0.01	1.472	25.40	0.00	17.3	82.3	0.4	-3.48	5.56	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✔	5YFP	6827	2022-07-06	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.12	0.0	0.04	10.78	0.00	2.024	26.41	0.10	17.3	82.4	0.3	-2.42	3.44	0.91	0.74	—	33096	5982	8	0	0	0	0	logfile
✔	6CES	7464	2022-07-04	2018-02-12	4.0	4.18	—	4.1	0.007	1.32	0.0	0.07	12.09	0.01	2.231	7.30	0.99	16.8	82.8	0.4	-5.29	0.80	0.73	—	4.0	0.012	1.27	0.0	0.05	15.52	0.01	1.845	22.13	0.24	17.3	82.5	0.2	-3.55	0.65	0.81	0.75	—	18988	2348	6	0	1	0	0	logfile
✔	6CET	7465	2022-07-04	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.90	0.0	0.05	13.90	0.01	2.140	17.50	0.06	17.4	82.6	0.0	-3.66	0.80	0.68	0.62	—	14012	1741	3	0	0	0	0	logfile
✔	6WUN	21917	2022-07-03	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.83	0.0	0.04	14.96	0.00	2.101	13.22	0.09	17.2	82.6	0.2	-4.00	0.56	0.68	0.80	1.50	10082	1326	4	0	0	0	0	logfile
✔	7BoY	30136	2022-07-07	2020-03-20	3.8	3.79	—	3.8	0.008	1.49	0.0	0.07	12.88	0.01	1.717	15.08	1.21	16.1	82.7	1.1	-5.15	0.84	0.83	2.69	3.7	0.004	0.97	0.0	0.05	15.79	0.01	2.001	20.75	0.36	17.1	82.7	0.3	-3.69	1.56	0.84	0.84	2.14	37794	4740	6	0	0	0	0	logfile
✔	7M65	23689	2022-07-02	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✔	6L1U	0803	2022-07-03	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.4	0.007	0.77	0.0	0.05	16.68	0.00	2.152	13.15	1.08	17.3	82.7	0.0	-5.04	1.97	0.48	0.85	2.84	10515	1500	15	0	0	0	0	logfile
✔	6GJ1	0009	2022-07-03	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.43	0.01	2.086	22.85	0.00	17.1	82.8	0.1	-3.73	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6B40	7046	2022-07-04	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.14	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.004	0.83	0.0	0.04	17.80	0.01	2.129	19.54	0.00	17.2	82.8	0.0	-3.38	2.12	0.80	0.78	—	16202	1800	12	100	42	0	0	logfile
✔	7JG9	22315	2022-07-04	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.55	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	3.4	0.006	1.09	0.0	0.09	7.30	0.01	2.145	4.77	0.00	17.1	82.8	0.1	-2.40	1.34	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	6NY1	8994	2022-07-03	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.57	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.003	0.74	0.0	0.04	20.33	0.00	2.151	16.89	0.17	17.1	82.8	0.1	-2.24	0.57	0.79	0.79	—	9911	783	4	154	121	0	0	logfile
✔	6BX3	7303	2022-07-03	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	25.18	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	13.15	0.00	2.112	21.18	0.00	17.0	82.9	0.1	-3.58	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	5Z1L	6876	2022-07-05	2017-12-26	4.0	3.76	—	4.0	0.004	0.99	0.0	0.07	9.07	0.01	2.380	2.79	0.65	12.5	87.5	0.0	-4.25	0.53	0.79	—	4.0	0.004	0.84	0.0	0.05	14.63	0.01	2.181	9.22	0.54	16.8	83.0	0.2	-2.80	0.65	0.54	0.81	—	25560	3582	18	0	0	0	0	logfile
✔	6NY3	8980	2022-07-03	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.008	1.04	0.0	0.04	20.12	0.01	2.138	11.27	0.00	16.8	83.0	0.3	-2.41	0.40	0.67	0.81	0.87	10214	794	4	164	121	0	0	logfile
✔	6PiF	20349	2022-07-06	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	7.10	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.008	1.05	0.0	0.05	17.17	0.01	1.521	14.48	0.13	16.2	83.0	0.7	-3.19	0.77	0.72	0.84	2.43	28954	3448	11	60	0	0	0	logfile
✔	5Lii	4053	2022-07-02	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	43.00	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.004	0.96	0.0	0.04	16.43	0.01	2.170	13.83	1.77	16.2	83.1	0.7	-4.16	0.89	0.56	0.67	1.31	3098	433	1	0	0	0	0	logfile

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