Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZCF	14629	2022-12-11	2022-03-28	4.0	4.23	3.97	4.2	0.003	0.65	0.0	0.04	14.10	0.00	2.089	10.15	0.56	14.8	85.2	0.0	-2.45	0.67	0.71	—	4.2	0.004	0.78	0.0	0.05	16.19	0.00	2.107	16.14	1.12	18.8	81.2	0.0	-2.94	0.61	0.70	0.78	—	3312	426	3	0	1	0	0	logfile
✔	7BW7	30229	2022-12-12	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.19	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.006	0.92	0.0	0.05	15.37	0.01	2.082	28.44	0.00	18.6	81.3	0.1	-4.32	0.71	0.72	0.67	—	8824	1091	3	0	0	0	0	logfile
✔	6JXA	9892	2022-12-13	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.48	0.00	2.173	16.33	0.00	15.8	81.5	2.7	-1.63	0.94	0.65	0.62	—	14100	2244	1	0	0	0	0	logfile
✔	7BZX	30262	2022-12-11	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	6B40	7046	2022-12-13	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.14	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.005	0.86	0.0	0.05	17.90	0.01	2.097	21.62	0.00	18.5	81.5	0.0	-3.41	2.12	0.81	0.78	—	16202	1800	12	100	42	0	0	logfile
✔	7KXY	23067	2022-12-12	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.44	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.71	0.01	2.101	25.46	0.00	18.3	81.6	0.1	-4.95	0.63	0.63	0.61	—	9510	1181	2	0	0	0	0	logfile
✔	7FiJ	31599	2022-12-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	6BX3	7303	2022-12-12	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	25.18	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.17	0.00	2.087	24.33	0.00	18.3	81.7	0.1	-3.59	1.39	0.74	0.73	—	10456	1413	7	0	0	0	0	logfile
✔	7DA4	30622	2022-12-11	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	7VZF	32227	2022-12-11	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	7Q67	13854	2022-12-11	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.003	0.89	0.0	0.04	18.34	0.00	2.105	22.53	0.73	18.2	81.8	0.0	-4.85	2.31	0.44	0.68	0.65	2618	363	11	0	0	0	0	logfile
✔	6EU0	3955	2022-12-22	2017-10-27	4.0	4.06	—	4.0	0.005	1.08	0.0	0.06	14.27	0.01	1.879	8.48	0.53	15.4	84.3	0.3	-5.25	0.72	0.66	—	4.0	0.005	0.88	0.0	0.05	18.16	0.00	1.886	19.98	0.66	17.8	82.0	0.2	-2.97	2.59	0.78	0.75	—	48918	5949	28	108	8	0	0	logfile
✔	7SYA	25521	2022-12-22	2021-11-24	3.5	4.86	3.47	3.3	0.003	0.69	0.0	0.04	14.93	0.00	2.087	15.83	0.11	16.5	82.7	0.8	-2.66	0.79	0.73	0.85	3.3	0.003	0.73	0.0	0.04	16.60	0.00	2.194	18.26	0.22	17.1	82.2	0.7	-2.31	1.00	0.79	0.74	0.89	49860	6180	12	0	0	0	0	logfile
✔	6EM4	3889	2022-12-21	2017-10-01	4.1	4.76	—	4.0	0.008	1.44	0.0	0.12	20.82	0.00	0.855	2.35	0.00	7.5	90.4	2.1	-3.71	0.66	0.57	—	3.9	0.004	0.88	0.0	0.04	25.28	0.00	1.958	17.38	0.00	17.6	82.2	0.1	-2.11	3.15	0.80	0.63	—	45400	6013	37	1779	0	0	0	logfile
✔	6HDD	0204	2022-12-16	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.01	0.0	0.05	13.22	0.01	1.497	26.00	0.00	17.4	82.2	0.4	-3.46	5.55	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✔	5WRG	6679	2022-12-13	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.10	0.0	0.05	12.22	0.00	1.996	18.90	0.00	17.5	82.3	0.1	-3.22	1.51	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	7BoY	30136	2022-12-20	2020-03-20	3.8	3.79	—	3.8	0.008	1.49	0.0	0.07	12.88	0.01	1.717	15.08	1.21	16.1	82.7	1.1	-5.15	0.84	0.83	2.69	3.7	0.004	0.96	0.0	0.05	15.75	0.00	2.084	21.80	0.56	17.5	82.3	0.3	-3.77	1.56	0.85	0.85	2.26	37794	4740	6	0	0	0	0	logfile
✔	6GJ1	0009	2022-12-13	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.54	0.01	2.091	23.54	0.07	17.5	82.4	0.1	-3.80	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	7V47	31702	2022-12-11	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.00	0.00	2.426	6.32	3.25	17.5	82.5	0.0	-4.25	0.34	0.43	0.79	5.70	2484	366	6	0	0	0	0	logfile
✔	6oKS	20103	2022-12-13	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.85	0.0	0.05	14.28	0.01	2.144	15.32	0.00	17.5	82.5	0.0	-4.73	2.22	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile

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