Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QX7	4662	2023-07-12	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.004	0.94	0.0	0.05	17.09	0.01	2.061	21.16	0.77	15.3	84.3	0.4	-2.07	1.16	0.66	0.59	0.63	25164	3072	12	0	0	0	0	logfile
✔	8A9B	15275	2023-07-04	2022-06-28	4.0	4.28	3.95	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.004	0.77	0.0	0.05	17.05	0.00	2.139	20.83	0.43	14.8	84.4	0.7	-2.95	0.53	0.71	0.64	—	6386	809	1	0	0	0	0	logfile
✔	5XLP	6731	2023-07-05	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.003	0.91	0.0	0.04	15.84	0.01	1.956	18.56	0.11	15.4	84.4	0.2	-3.85	2.41	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6PiF	20349	2023-07-13	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.99	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.004	0.85	1.0	0.04	16.99	0.00	2.057	11.76	0.36	15.1	84.4	0.5	-2.84	1.57	0.72	0.85	2.29	28954	3448	11	60	0	0	0	logfile
✔	7TKH	25969	2023-07-10	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	4UY8	2773	2023-07-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.34	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.003	0.59	0.0	0.03	17.01	0.00	1.696	54.58	0.93	13.2	84.5	2.3	-3.45	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	7SHE	25125	2023-07-05	2021-10-08	3.4	2.32	—	3.2	0.013	1.85	28.0	0.28	16.32	0.01	1.502	17.94	1.41	14.1	84.0	1.9	-4.29	0.69	0.67	1.18	3.2	0.004	0.77	0.0	0.04	16.36	0.01	2.157	8.97	0.24	14.8	84.5	0.7	-2.98	1.46	0.78	0.81	1.80	8990	1081	4	0	24	0	0	logfile
✔	6JBH	9790	2023-07-04	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	0.96	0.0	0.05	16.03	0.00	2.205	14.25	0.85	15.5	84.5	0.0	-2.08	0.98	0.68	0.81	2.06	8592	1062	4	0	0	0	0	logfile
✔	7DXi	30910	2023-07-04	2021-01-19	3.53	3.60	—	3.6	0.006	1.30	0.0	0.06	15.06	0.01	1.468	4.71	0.30	13.9	85.5	0.6	-5.04	0.73	0.81	3.68	3.6	0.004	0.79	0.0	0.04	16.58	0.01	2.187	10.75	0.89	15.4	84.6	0.0	-2.54	0.49	0.73	0.81	2.79	6130	742	4	0	2	0	0	logfile
✔	7RFP	24444	2023-07-03	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	7o7L	12747	2023-07-19	2021-04-13	4.5	5.42	—	6.7	0.008	1.16	8.0	0.08	16.10	0.02	2.027	13.41	0.49	16.8	82.5	0.7	-5.47	0.80	0.63	—	6.6	0.004	0.94	0.0	0.05	14.84	0.01	2.008	32.04	0.06	15.3	84.6	0.1	-3.83	1.53	0.82	0.69	—	44614	5640	14	0	44	0	0	logfile
✔	6ZD0	11172	2023-07-04	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	5ANB	3146	2023-07-19	2015-09-06	4.1	4.11	—	4.1	0.008	1.32	6.0	0.10	18.54	0.01	1.245	5.12	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.005	0.85	0.0	0.04	17.23	0.01	1.955	21.18	0.04	14.6	84.7	0.7	-3.65	1.60	0.39	0.70	—	48493	3025	12	1162	0	0	0	logfile
✔	7W88	32353	2023-07-04	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.003	0.75	0.0	0.04	17.22	0.00	2.213	16.13	0.64	15.3	84.7	0.0	-3.13	0.94	0.70	0.69	1.73	7138	896	1	0	0	0	0	logfile
✔	7E94	31028	2023-07-19	2021-03-03	4.67	5.59	—	4.2	0.008	1.47	7.0	0.08	14.82	0.01	1.403	10.80	1.04	12.4	86.6	1.0	-5.01	0.78	0.52	—	4.1	0.006	0.96	0.0	0.05	13.63	0.01	1.973	34.36	0.05	15.1	84.7	0.2	-3.17	1.54	0.88	0.62	—	46305	6583	22	0	0	0	0	logfile
✔	5Lii	4053	2023-07-03	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	7YiH	33859	2023-07-10	2022-07-16	3.5	3.85	3.58	3.8	0.004	0.78	0.0	0.05	14.23	0.01	2.066	16.72	0.00	13.9	85.0	1.1	-2.65	0.61	0.68	1.55	3.8	0.005	0.78	0.0	0.05	16.29	0.01	2.135	15.66	0.67	14.2	84.7	1.1	-2.09	0.93	0.63	0.73	1.59	21321	2640	8	0	5	4	0	logfile
✔	6NY2	8996	2023-07-05	2019-02-10	3.2	3.56	—	3.4	0.007	1.02	0.0	0.05	20.27	0.01	2.266	6.07	0.66	15.6	83.6	0.8	-4.66	0.78	0.81	2.12	3.4	0.004	0.69	0.0	0.04	20.79	0.00	2.178	10.92	0.99	15.2	84.7	0.1	-1.21	0.44	0.78	0.82	1.69	10538	794	4	180	121	0	0	logfile
✔	6SoF	10273	2023-07-14	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	5VCA	8659	2023-07-08	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.004	0.74	0.0	0.04	6.04	0.00	2.096	8.58	0.00	15.1	84.8	0.1	-2.22	2.93	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile

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