Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZGK	11209	2023-04-22	2020-06-18	3.6	3.77	3.64	3.8	0.006	0.68	0.0	0.05	12.30	0.01	2.111	7.47	0.00	6.6	93.4	0.0	-0.58	0.50	0.54	1.42	3.7	0.003	0.60	0.0	0.04	15.12	0.00	2.133	6.64	0.26	4.0	96.0	0.0	-0.17	1.08	0.67	0.84	2.45	11630	1535	5	0	0	0	0	logfile
✔	6HZ9	0315	2023-04-24	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	7XDD	33144	2023-04-21	2022-03-26	2.93	2.56	2.92	3.0	0.005	0.72	0.0	0.05	14.36	0.00	2.204	6.52	2.03	2.4	97.6	0.0	0.32	0.79	0.85	3.21	3.0	0.003	0.60	0.0	0.04	16.22	0.00	2.100	7.14	1.93	2.1	97.9	0.0	1.85	0.47	0.80	0.87	2.70	9021	1123	2	0	0	0	0	logfile
✔	7KRJ	23004	2023-04-27	2020-11-20	2.56	3.00	2.65	3.0	0.026	1.84	0.0	0.11	10.79	0.01	1.787	0.78	0.07	1.9	98.0	0.1	0.71	0.88	0.88	3.95	2.9	0.003	0.63	0.0	0.04	14.36	0.00	1.928	4.46	0.40	3.0	97.0	0.0	0.57	0.75	0.87	0.88	3.74	26866	1642	7	0	5	0	13407	logfile
✔	6V01	20967	2023-04-23	2019-11-18	3.9	3.77	—	3.8	0.009	1.31	8.0	0.22	17.60	0.01	2.260	5.97	2.34	4.7	95.3	0.0	-5.38	0.62	0.70	1.91	3.8	0.004	0.65	0.0	0.04	17.57	0.00	2.140	8.20	0.22	3.4	96.6	0.0	-0.90	0.79	0.65	0.72	2.10	15480	2060	20	0	12	0	0	logfile
✔	7MRW	23959	2023-04-26	2021-05-10	3.72	4.05	—	4.0	0.009	1.00	0.0	0.05	9.64	0.01	2.217	5.49	0.22	3.8	96.1	0.1	-4.57	0.78	0.81	2.97	4.0	0.003	0.63	0.0	0.04	14.24	0.00	2.149	11.06	0.22	3.4	96.6	0.0	0.66	1.26	0.77	0.81	1.87	24152	2887	3	0	0	0	0	logfile
✔	6HZ5	0311	2023-04-24	2018-10-22	4.2	4.28	4.18	4.3	0.009	0.97	0.0	0.05	14.60	0.01	1.960	2.94	0.70	2.7	97.3	0.0	-0.55	0.79	0.76	—	4.2	0.003	0.58	0.0	0.04	14.66	0.00	1.803	11.78	0.05	4.9	95.1	0.0	0.00	1.88	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6UVA	20906	2023-04-21	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile
✔	6BFU	7094	2023-04-27	2017-10-27	3.5	3.80	—	3.7	0.018	1.39	0.0	0.11	10.66	0.01	2.005	1.41	0.35	3.2	96.6	0.2	0.52	0.86	0.84	2.39	3.7	0.005	0.68	0.0	0.04	14.27	0.00	2.135	8.54	0.12	3.7	96.3	0.0	0.42	0.72	0.82	0.85	2.78	24480	2892	45	0	168	0	0	logfile
✔	6T7A	10391	2023-04-21	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.76	0.0	0.04	26.57	0.00	2.152	16.37	1.40	2.5	97.5	0.0	2.32	1.74	0.87	0.85	1.25	10338	847	11	190	0	0	0	logfile
✔	6RYU	10059	2023-04-26	2019-06-12	4.0	4.17	4.06	4.0	0.006	1.06	2.0	0.06	22.93	0.01	2.263	6.52	1.64	5.8	94.2	0.0	-5.25	0.86	0.79	—	4.0	0.004	0.72	0.0	0.04	24.18	0.00	1.942	14.89	0.27	5.9	94.1	0.0	-1.13	1.34	0.86	0.79	—	23598	2156	14	298	32	0	0	logfile
✔	7RES	24438	2023-04-29	2021-07-13	3.05	2.96	—	2.9	0.017	1.40	3.0	0.06	16.62	0.00	2.150	11.59	4.87	7.0	93.0	0.1	-3.02	0.64	0.83	4.11	3.0	0.003	0.56	0.0	0.04	16.73	0.00	2.062	9.92	0.29	4.7	95.3	0.0	-0.49	1.12	0.64	0.84	3.12	30088	3856	16	0	32	0	0	logfile
✔	7V21	31633	2023-04-22	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.92	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.143	5.68	0.16	2.3	97.7	0.0	1.49	0.44	0.73	0.88	3.08	11903	1505	4	0	0	0	0	logfile
✔	6B3Q	7041	2023-04-23	2017-09-22	3.7	3.84	3.74	3.7	0.005	1.03	0.0	0.06	12.29	0.01	2.212	4.06	0.00	2.6	97.4	0.0	-4.53	0.80	0.78	1.51	3.7	0.003	0.72	0.0	0.04	15.75	0.00	2.159	13.68	0.47	4.4	95.6	0.0	-0.72	0.85	0.82	0.80	1.53	15727	1929	4	0	0	0	0	logfile
✔	6PWX	20514	2023-04-27	2019-07-23	4.2	4.53	—	4.2	0.003	0.59	0.0	0.04	27.24	0.00	2.098	13.58	3.58	4.5	95.5	0.0	-1.76	0.89	0.85	—	4.2	0.004	0.67	0.0	0.04	26.63	0.00	2.093	18.73	0.00	4.1	95.9	0.0	0.20	0.74	0.90	0.86	—	14411	1074	11	292	0	0	0	logfile
✔	7NJP	12402	2023-04-27	2021-02-17	2.84	2.89	—	2.7	0.003	0.50	0.0	0.04	14.36	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.003	0.51	0.0	0.04	15.56	0.00	1.765	7.05	0.34	2.5	97.4	0.0	1.72	0.91	0.86	0.88	3.33	74554	4929	31	0	11	16	37305	logfile
✔	5YWD	6853	2023-04-21	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.76	0.0	0.04	13.58	0.00	1.928	14.00	0.00	4.0	96.0	0.0	1.14	1.51	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	7RAN	24378	2023-04-20	2021-07-02	3.45	3.40	—	3.5	0.005	0.70	0.0	0.05	12.51	0.00	2.091	5.14	0.00	3.0	97.0	0.0	0.61	0.75	0.81	2.69	3.5	0.003	0.56	0.0	0.04	14.79	0.00	2.095	4.96	0.11	2.8	97.2	0.0	0.67	0.36	0.76	0.84	2.18	8523	1120	6	0	1	0	0	logfile
✔	7V1Y	31630	2023-04-22	2021-08-07	2.82	2.93	—	2.9	0.006	0.78	8.0	0.06	13.04	0.00	2.254	2.36	0.15	2.9	97.1	0.0	1.48	0.69	0.86	3.24	2.9	0.002	0.51	4.0	0.04	16.04	0.00	2.238	3.52	1.05	2.9	97.1	0.0	1.19	0.59	0.68	0.87	3.04	12524	1588	8	0	0	0	0	logfile
✔	7A94	11684	2023-04-29	2020-09-01	3.9	4.30	4.00	4.0	0.007	0.87	3.0	0.06	13.58	0.01	2.085	3.58	0.87	6.8	93.2	0.0	-1.82	0.89	0.84	1.86	4.0	0.003	0.65	0.0	0.04	14.33	0.00	2.086	7.68	0.21	4.0	96.0	0.0	-0.09	1.62	0.89	0.85	1.41	30463	3825	8	0	24	0	0	logfile

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