Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Z10	6865	2021-06-03	2017-12-22	3.97	4.10	—	4.0	0.006	1.05	0.0	0.06	15.59	0.01	2.234	6.44	0.79	8.0	92.0	0.0	-4.80	0.68	0.77	1.45	4.0	0.004	0.78	0.0	0.04	16.54	0.00	2.126	12.94	0.45	6.2	93.8	0.0	-0.17	0.64	0.67	0.74	1.15	29142	3912	3	0	0	0	0	logfile
✔	5BK4	9400	2021-06-05	2017-09-12	3.9	4.14	—	4.1	0.008	1.25	0.0	0.06	14.44	0.01	2.234	5.14	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	4.0	0.003	0.79	0.0	0.04	16.91	0.01	2.078	10.05	0.41	9.3	90.7	0.0	-1.40	0.97	0.81	0.80	1.41	62482	7636	22	120	8	0	0	logfile
✔	6T8H	10401	2021-06-02	2019-10-24	3.77	3.90	3.76	3.8	0.012	1.09	1.0	0.07	11.25	0.01	1.696	38.53	0.94	8.6	91.3	0.1	-3.78	0.81	0.82	2.42	3.8	0.004	0.65	0.0	0.05	16.25	0.00	1.852	55.13	0.39	7.0	93.0	0.0	-0.32	1.27	0.82	0.82	2.09	19398	2346	9	34	5	0	33	logfile
✔	6RiC	4888	2021-06-03	2019-04-23	2.8	2.91	2.91	2.8	0.006	0.76	0.0	0.05	14.01	0.01	2.068	5.10	0.03	3.5	96.5	0.0	-4.16	0.76	0.83	4.00	2.9	0.004	0.63	0.0	0.04	16.59	0.00	2.091	10.83	1.61	3.0	97.0	0.0	-0.01	1.01	0.82	0.88	3.33	29677	3663	12	0	5	0	0	logfile
✔	6RQC	4980	2021-06-04	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.00	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.004	0.70	0.0	0.04	16.73	0.00	1.862	16.39	0.00	10.7	89.3	0.0	-2.08	3.27	0.79	0.70	—	105223	6174	23	176	15	0	51978	logfile
✔	6JBQ	9792	2021-06-03	2019-01-26	4.02	4.10	3.96	4.1	0.003	0.71	0.0	0.05	16.33	0.01	2.197	4.02	0.39	3.9	96.1	0.0	-4.13	0.77	0.79	—	4.0	0.003	0.63	0.0	0.04	16.35	0.00	2.097	8.71	0.00	5.0	95.0	0.0	-0.47	1.61	0.80	0.82	—	28163	3347	10	101	3	0	0	logfile
✔	6KLX	0721	2021-06-03	2019-07-30	2.9	3.09	—	3.0	0.008	0.69	0.0	0.05	13.80	0.01	2.177	6.64	0.13	6.8	93.2	0.0	-3.59	0.73	0.85	4.20	3.0	0.002	0.51	0.0	0.04	15.93	0.00	2.192	6.81	1.79	5.1	94.9	0.0	-0.86	1.18	0.75	0.86	3.80	20055	2576	14	0	14	0	0	logfile
✔	6U9F	20696	2021-06-02	2019-09-08	4.35	4.41	—	4.3	0.009	1.10	0.0	0.06	9.47	0.01	2.193	7.59	0.15	13.4	86.6	0.0	-4.71	0.78	0.78	—	4.3	0.003	0.66	0.0	0.05	12.42	0.00	2.078	12.38	0.00	9.2	90.8	0.0	-2.12	1.38	0.80	0.80	—	19179	2550	6	0	0	0	0	logfile
✔	6FFC	4256	2021-06-01	2018-01-06	3.56	3.73	—	3.7	0.017	1.13	0.0	0.24	9.55	0.01	2.235	3.86	0.00	3.9	95.9	0.2	-3.27	0.70	0.86	3.78	3.7	0.003	0.69	0.0	0.04	14.23	0.00	2.171	10.66	0.00	2.8	97.2	0.0	1.11	0.72	0.71	0.86	2.22	8974	1144	4	0	2	0	0	logfile
✔	6KLo	0713	2021-06-03	2019-07-30	2.8	3.01	—	2.9	0.005	0.60	0.0	0.05	13.06	0.00	2.185	5.56	0.12	5.9	94.1	0.0	-3.14	0.77	0.87	4.15	2.9	0.003	0.56	0.0	0.05	15.89	0.00	2.192	5.36	1.04	6.2	93.8	0.0	-0.75	0.40	0.76	0.88	3.88	23275	2972	15	0	14	0	0	logfile
✔	6oJ3	20086	2021-06-04	2019-04-10	4.5	4.52	4.52	4.5	0.010	1.29	0.0	0.07	10.21	0.01	2.062	3.53	0.01	9.0	91.0	0.0	-3.41	0.63	0.73	—	4.4	0.004	0.67	0.0	0.04	13.76	0.01	1.842	15.44	0.01	7.8	92.1	0.0	-0.80	2.20	0.66	0.77	—	148557	9072	11	0	0	0	74462	logfile
✔	6QLD	4579	2021-06-03	2019-01-31	4.15	4.29	—	4.1	0.004	0.86	1.0	0.05	21.51	0.01	2.289	5.01	0.25	5.1	94.8	0.2	-3.52	0.83	0.76	—	4.1	0.004	0.66	0.0	0.04	20.76	0.00	2.186	13.89	0.04	6.0	94.0	0.0	0.94	1.33	0.83	0.76	—	29086	3157	22	248	0	0	0	logfile
✔	6UGM	20765	2021-06-04	2019-09-26	3.7	3.82	—	3.7	0.010	1.29	16.0	0.07	24.13	0.01	1.984	8.22	1.24	6.5	93.4	0.1	-5.54	0.75	0.74	1.35	3.7	0.004	0.65	0.0	0.04	24.26	0.00	2.121	13.98	0.26	7.6	92.4	0.0	-2.50	0.57	0.75	0.73	0.98	23609	2205	19	292	2	0	0	logfile
✔	6RKU	4910	2021-06-02	2019-04-30	4.0	4.41	—	4.1	0.018	1.76	0.0	0.15	13.42	0.01	2.215	5.93	0.00	7.7	92.3	0.0	-2.01	0.89	0.85	—	4.1	0.005	1.43	0.0	0.04	15.84	0.00	2.052	9.63	0.33	6.0	94.0	0.0	0.18	2.79	0.89	0.86	—	15526	1784	9	64	1	0	0	logfile
✔	6QNo	4598	2021-06-02	2019-02-11	4.38	4.65	—	4.4	0.010	1.25	0.0	0.07	11.68	0.01	2.227	11.85	1.65	11.6	88.4	0.0	-3.96	0.80	0.75	—	4.4	0.004	0.76	0.0	0.04	12.51	0.00	2.040	18.07	0.26	8.7	91.3	0.0	-1.36	0.88	0.80	0.74	—	10429	1332	6	0	3	0	0	logfile
✔	6QPW	4616	2021-06-01	2019-02-15	3.3	3.57	—	3.6	0.005	0.99	0.0	0.06	16.01	0.01	2.122	5.83	0.14	5.0	95.0	0.0	-3.55	0.70	0.74	3.06	3.6	0.004	0.70	0.0	0.04	17.92	0.00	2.053	13.06	0.41	5.8	94.2	0.0	-0.96	1.39	0.73	0.78	2.70	6784	839	6	0	4	0	0	logfile
✔	6o6A	0631	2021-06-03	2019-03-05	3.6	3.69	—	3.6	0.034	1.38	0.0	0.22	15.77	0.01	1.986	6.00	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.007	1.05	1.0	0.08	17.26	0.01	2.065	19.28	0.64	7.4	92.6	0.0	-4.48	2.43	0.62	0.78	2.08	27220	3312	8	0	8	0	0	logfile
✔	6DZK	8934	2021-06-03	2018-07-05	3.6	3.73	—	3.6	0.008	1.01	19.0	0.11	15.34	0.01	1.999	4.48	0.09	9.8	89.9	0.3	-4.16	0.83	0.79	1.48	3.6	0.003	0.71	7.0	0.10	16.60	0.00	1.884	10.88	0.42	8.6	91.4	0.0	-0.77	3.53	0.83	0.80	1.05	90307	2568	23	1511	0	0	37538	logfile
✔	6K7H	9932	2021-06-02	2019-06-07	3.22	3.37	3.03	3.3	0.029	1.41	0.0	0.18	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.006	0.97	0.0	0.06	16.64	0.01	2.220	12.15	0.52	6.6	93.4	0.0	-2.84	0.32	0.69	0.89	3.14	10577	1312	2	0	6	0	0	logfile
✔	6VQX	21360	2021-06-03	2020-02-06	3.15	3.69	—	3.4	0.005	0.83	0.0	0.05	11.39	0.01	2.180	7.24	0.04	8.7	91.2	0.0	-4.44	0.85	0.82	2.79	3.4	0.005	0.74	0.0	0.04	15.30	0.00	2.087	15.92	0.54	9.7	90.3	0.0	-1.35	0.89	0.86	0.85	2.24	23696	2972	11	60	0	0	0	logfile

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