Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Li7	23362	2023-09-28	2021-01-26	4.1	4.15	—	4.2	0.002	0.61	0.0	0.06	12.21	0.00	2.297	10.16	0.00	4.2	95.8	0.0	-2.70	0.52	0.67	—	4.1	0.003	0.66	0.0	0.04	12.76	0.00	2.215	13.30	0.00	5.8	94.2	0.0	-1.41	0.98	0.66	0.77	—	6177	765	5	0	13	0	0	logfile
✔	7WP8	32678	2023-09-28	2022-01-23	3.88	4.14	—	4.1	0.008	1.01	2.0	0.11	14.63	0.01	2.250	7.91	0.00	9.0	90.9	0.1	-4.12	0.69	0.80	2.68	4.0	0.003	0.73	0.0	0.05	16.55	0.00	2.080	14.91	0.14	8.9	91.1	0.0	-2.76	2.41	0.69	0.79	2.23	6797	861	9	0	3	0	0	logfile
✔	7WHZ	32516	2023-09-28	2022-01-01	3.42	3.64	—	3.7	0.007	0.94	0.0	0.06	14.19	0.01	2.276	5.93	0.40	8.4	91.6	0.0	-4.20	0.67	0.81	2.33	3.7	0.004	0.62	0.0	0.04	16.01	0.00	2.112	11.18	0.27	6.4	93.6	0.0	-1.76	0.54	0.67	0.84	2.72	6810	887	8	0	1	0	0	logfile
✔	8D8R	27255	2023-09-27	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	11.00	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.75	0.0	0.05	12.45	0.01	2.191	14.44	0.00	6.7	93.3	0.0	-0.58	1.90	0.62	0.66	—	3323	425	3	0	1	0	0	logfile
✔	8A1R	15084	2023-09-29	2022-06-01	3.6	5.63	3.62	3.4	0.014	1.35	0.0	0.05	15.14	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.77	1.0	0.05	16.10	0.00	2.170	19.32	0.41	5.9	94.1	0.0	-0.55	0.61	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7Wi0	32517	2023-09-28	2022-01-01	3.82	4.11	—	4.1	0.008	1.05	0.0	0.06	14.40	0.01	2.265	6.66	0.40	8.6	91.3	0.1	-4.32	0.72	0.81	2.23	4.1	0.004	0.79	0.0	0.05	16.11	0.00	2.120	13.02	0.40	9.2	90.8	0.0	-2.27	1.84	0.71	0.82	1.96	6823	886	8	0	1	0	0	logfile
✔	7NPW	12524	2023-09-30	2021-02-28	3.99	4.53	—	4.3	0.003	0.67	0.0	0.04	13.77	0.00	2.290	12.91	0.00	3.3	96.7	0.0	0.92	0.52	0.76	1.58	4.3	0.003	0.78	0.0	0.05	16.19	0.00	2.160	16.52	0.66	4.0	96.0	0.0	0.75	0.62	0.56	0.81	1.26	9723	1278	3	0	0	0	0	logfile
✔	6SCN	10143	2023-09-29	2019-07-24	3.1	3.62	3.00	3.2	0.007	0.84	0.0	0.05	10.50	0.01	2.037	14.15	0.82	4.9	94.3	0.8	-2.90	0.79	0.83	3.66	3.2	0.004	0.66	0.0	0.04	12.93	0.00	2.117	11.75	0.21	4.2	95.7	0.0	0.62	1.03	0.80	0.87	2.96	60582	7875	33	0	0	0	0	logfile
✔	7WB5	32395	2023-09-27	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	18.47	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.04	16.86	0.01	2.186	16.09	0.00	10.4	89.6	0.0	-3.57	1.62	0.61	0.77	2.22	3256	408	4	0	3	0	0	logfile
✔	8DV1	27730	2023-09-28	2022-07-27	3.4	3.67	3.39	3.5	0.018	1.71	2.0	0.10	10.82	0.01	2.277	1.25	0.43	2.5	97.5	0.0	-0.24	0.79	0.80	2.48	3.5	0.004	0.74	0.0	0.05	15.53	0.00	2.049	12.61	0.29	3.4	96.6	0.0	0.76	1.53	0.80	0.82	2.11	6543	796	4	0	7	0	0	logfile
✔	7WLE	32583	2023-09-30	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.3	0.004	0.88	0.0	0.05	14.75	0.00	2.079	20.16	0.53	7.2	92.8	0.0	-0.82	1.84	0.80	0.78	1.55	10188	1324	2	0	0	0	0	logfile
✔	7X7T	33047	2023-09-28	2022-03-10	3.48	3.70	—	3.7	0.007	1.04	3.0	0.06	13.40	0.01	2.174	8.12	0.14	6.0	93.9	0.1	-4.53	0.44	0.61	3.49	3.7	0.003	0.62	0.0	0.04	15.57	0.00	2.201	9.40	0.41	4.1	95.9	0.0	-2.01	0.93	0.69	0.83	3.23	6815	871	8	0	1	0	0	logfile
✔	7V24	31636	2023-09-27	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	12.03	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.005	0.69	0.0	0.04	15.40	0.00	2.137	11.23	0.00	10.4	89.6	0.0	-1.14	0.40	0.66	0.84	3.54	3814	487	3	0	0	0	0	logfile
✔	7Yoo	33985	2023-09-29	2022-08-01	3.11	2.28	—	3.2	0.002	0.45	0.0	0.04	13.30	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.51	0.0	0.04	15.22	0.00	2.198	4.86	0.40	2.4	97.6	0.0	0.78	0.93	0.79	0.84	3.27	9188	1169	6	0	0	0	0	logfile
✔	7ZCF	14629	2023-09-27	2022-03-28	4.0	4.23	3.97	4.2	0.003	0.66	0.0	0.04	14.12	0.00	2.089	10.15	0.56	14.8	85.2	0.0	-2.45	0.67	0.71	—	4.2	0.004	0.77	0.0	0.05	16.06	0.00	2.129	14.91	1.40	19.8	80.2	0.0	-3.01	0.62	0.70	0.78	—	3312	426	3	0	1	0	0	logfile
✔	8iY6	35815	2023-09-28	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.004	0.71	0.0	0.04	14.61	0.00	2.153	10.66	1.77	2.0	98.0	0.0	1.86	1.26	0.42	0.64	1.51	2495	314	2	0	0	0	0	logfile
✔	7UHB	26511	2023-09-27	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.92	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.2	0.003	0.61	0.0	0.04	16.83	0.00	2.223	8.94	2.84	3.0	97.0	0.0	0.69	2.47	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	8BCZ	15971	2023-09-29	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.56	0.0	0.04	13.91	0.00	2.142	6.64	3.01	3.0	97.0	0.0	0.66	0.88	0.63	0.83	4.16	8505	1100	9	0	0	0	0	logfile
✔	7UiU	26553	2023-09-27	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7WCU	32429	2023-09-27	2021-12-20	3.09	3.27	—	3.2	0.009	1.15	0.0	0.06	13.76	0.01	2.289	6.61	0.29	7.8	92.2	0.0	-2.63	0.61	0.82	3.98	3.2	0.003	0.67	0.0	0.04	15.48	0.00	2.187	11.80	0.29	6.9	93.1	0.0	-2.18	0.48	0.61	0.82	3.47	3248	416	3	0	0	0	0	logfile

• ← previous
• Page 2 of 206
• next →