Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NYW	12656	2022-04-09	2021-03-23	3.1	3.76	3.13	3.2	0.003	0.50	0.0	0.04	18.04	0.00	1.891	6.07	0.00	3.7	96.3	0.0	1.43	0.83	0.79	1.86	3.2	0.003	0.49	0.0	0.04	18.54	0.00	1.855	6.50	0.08	3.6	96.4	0.0	2.00	0.47	0.84	0.83	1.82	48568	2795	18	104	6	0	23780	logfile
✔	7oP5	13013	2022-04-04	2021-05-29	3.7	4.09	—	4.0	0.004	0.72	0.0	0.05	13.58	0.00	1.940	8.21	0.00	6.2	93.8	0.0	-1.69	0.68	0.78	1.67	4.0	0.003	0.60	0.0	0.04	15.71	0.01	1.900	7.57	0.21	4.6	95.4	0.0	-0.44	0.42	0.67	0.77	1.07	8554	1076	1	0	2	0	0	logfile
✔	7F4G	31450	2022-04-07	2021-06-18	2.78	3.30	—	3.2	0.017	1.11	4.0	0.07	14.67	0.01	1.898	14.93	1.43	8.7	91.0	0.3	-3.97	0.69	0.81	3.30	3.2	0.003	0.68	0.0	0.05	16.88	0.00	2.124	11.59	2.69	5.6	94.4	0.0	-0.37	1.19	0.59	0.73	2.37	27957	3491	17	0	5	0	0	logfile
✔	7LQi	23487	2022-04-04	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.83	3.83	46.2	53.8	0.0	-7.03	1.54	0.65	0.83	2.47	8400	800	100	0	0	0	0	logfile
✔	7AFN	11771	2022-04-06	2020-09-19	3.86	5.27	3.89	3.0	0.009	1.02	3.0	0.07	17.92	0.02	1.755	23.03	0.00	6.9	93.1	0.0	-1.93	0.90	0.83	0.72	3.0	0.004	0.75	0.0	0.04	17.09	0.01	1.889	24.66	0.65	4.1	95.9	0.0	0.13	1.72	0.91	0.88	0.80	18520	1108	11	456	12	0	0	logfile
✔	7o7F	12746	2022-04-05	2021-04-13	3.15	3.42	3.19	3.4	0.004	0.64	0.0	0.04	14.02	0.00	1.932	7.93	0.16	2.5	97.5	0.0	0.48	0.70	0.77	2.29	3.4	0.004	0.66	0.0	0.04	15.82	0.01	2.096	9.46	0.24	2.0	98.0	0.0	0.49	0.52	0.69	0.75	1.99	11170	1420	7	0	0	0	0	logfile
✔	7B9F	12103	2022-04-05	2020-12-14	3.0	3.81	—	3.5	0.008	1.01	1.0	0.06	12.03	0.01	2.247	4.11	0.00	3.4	96.6	0.0	-0.11	0.61	0.82	2.32	3.5	0.006	0.87	0.0	0.05	15.28	0.01	2.163	12.96	2.46	4.2	95.8	0.0	1.17	0.59	0.62	0.84	1.68	11270	1475	5	0	0	0	0	logfile
✔	7BoF	12241	2022-04-08	2021-01-25	2.92	3.17	2.92	2.9	0.008	0.65	0.0	0.04	14.44	0.01	1.894	9.72	0.00	3.6	96.4	0.0	-2.50	0.84	0.87	3.08	2.9	0.008	0.70	0.0	0.04	15.19	0.01	1.849	11.22	2.76	4.0	96.0	0.0	-0.29	1.12	0.87	0.92	2.82	32814	1238	13	1070	129	0	0	logfile
✔	7BoD	12239	2022-04-08	2021-01-25	2.88	3.14	2.90	2.9	0.007	0.73	0.0	0.04	14.55	0.02	1.913	6.23	0.47	2.1	97.9	0.0	-1.72	0.82	0.87	2.85	2.9	0.006	0.65	0.0	0.04	15.14	0.01	1.888	9.97	3.12	2.7	97.3	0.0	0.26	0.46	0.85	0.92	3.03	33389	1289	14	1078	101	0	0	logfile
✔	7BoG	12242	2022-04-08	2021-01-25	2.75	3.15	2.81	2.9	0.007	0.61	0.0	0.04	13.93	0.02	1.937	5.87	0.00	3.0	97.0	0.0	-1.93	0.87	0.91	3.29	2.9	0.009	0.72	0.0	0.04	14.71	0.01	1.870	9.81	2.46	3.5	96.5	0.0	0.01	1.12	0.87	0.92	2.80	33589	1336	16	1071	105	0	0	logfile
✔	7AFK	11768	2022-04-06	2020-09-19	4.9	5.45	4.73	3.0	0.008	0.88	1.0	0.05	18.40	0.02	1.519	42.19	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.7	0.004	0.73	0.0	0.04	17.62	0.01	1.846	36.58	0.00	5.7	94.3	0.0	-1.09	0.77	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	7NKY	12450	2022-04-10	2021-02-19	3.2	3.33	—	3.3	0.006	0.97	0.0	0.05	20.35	0.01	1.982	6.56	0.02	4.9	95.1	0.0	-0.29	0.81	0.73	1.11	3.3	0.006	0.75	1.0	0.04	21.10	0.00	2.030	14.54	0.40	4.1	95.9	0.0	0.42	0.57	0.83	0.77	1.42	51842	5734	34	302	10	0	0	logfile
✔	7MTR	23995	2022-04-05	2021-05-13	3.3	2.40	—	2.1	0.007	0.97	1.0	0.05	14.03	0.01	2.236	7.66	1.03	3.9	96.1	0.0	-0.20	0.78	0.74	2.62	2.1	0.013	1.22	1.0	0.04	15.21	0.01	2.155	5.25	0.10	2.6	97.4	0.0	0.33	0.47	0.79	0.79	2.31	10967	1524	4	0	3	0	0	logfile
✔	7MTQ	23994	2022-04-05	2021-05-13	3.65	2.61	—	2.2	0.011	0.84	1.0	0.05	13.67	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.004	0.63	0.0	0.04	14.34	0.01	2.159	7.68	0.22	2.9	97.1	0.0	0.05	0.42	0.72	0.74	1.82	10388	1486	4	0	4	0	0	logfile
✔	7AFL	11769	2022-04-08	2020-09-19	4.2	5.13	4.56	3.0	0.010	1.08	6.0	0.06	17.44	0.01	1.852	43.68	0.00	6.0	94.0	0.0	-1.84	0.89	0.87	—	2.8	0.006	0.72	0.0	0.04	16.52	0.01	1.822	40.79	0.00	6.1	93.9	0.0	-1.34	0.73	0.89	0.88	—	34322	1487	15	1054	25	0	0	logfile
✔	7B9S	12105	2022-04-06	2020-12-14	3.4	4.02	—	3.6	0.006	1.03	6.0	0.06	12.82	0.01	2.271	2.93	0.37	3.8	96.2	0.0	-0.79	0.77	0.79	1.17	3.6	0.008	0.89	1.0	0.05	14.41	0.00	1.876	13.77	0.15	3.9	96.1	0.0	1.07	0.61	0.78	0.81	0.78	72030	9426	30	0	0	0	0	logfile
✔	7N1X	24126	2022-04-07	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	9.88	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.008	0.89	1.0	0.05	16.35	0.01	2.088	14.04	0.60	4.9	95.1	0.0	-1.02	1.09	0.80	0.68	—	26810	3257	35	0	95	0	0	logfile
✔	7N1U	24123	2022-04-07	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.59	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.76	0.0	0.05	15.84	0.01	2.016	11.55	0.25	4.0	96.0	0.0	-0.09	0.66	0.84	0.83	2.29	26619	3225	39	0	99	0	0	logfile
✔	7NAS	12246	2022-04-08	2021-01-25	3.31	4.38	7.71	2.7	0.009	0.80	3.0	0.05	15.55	0.01	1.629	25.97	0.00	8.1	91.9	0.0	-3.73	0.90	0.90	1.47	2.7	0.008	0.80	0.0	0.04	16.02	0.01	1.729	30.72	0.75	6.2	93.8	0.0	-1.33	1.21	0.90	0.91	1.44	32390	1454	15	974	43	0	0	logfile
✔	7DDE	30652	2022-04-09	2020-10-28	2.26	3.31	—	3.0	0.009	1.14	10.0	0.07	14.34	0.01	2.042	8.45	1.16	5.0	94.9	0.0	-2.84	0.71	0.85	3.66	3.0	0.003	0.65	0.0	0.05	16.03	0.00	1.969	13.61	1.01	6.2	93.8	0.0	-0.22	1.17	0.69	0.85	3.23	51171	6300	36	0	48	1911	0	logfile

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