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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HiQ | 34826 | 2024-03-10 | 2022-11-21 | 3.2 | 3.35 | 3.10 | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 17.06 | 0.01 | 2.284 | 14.48 | 0.00 | 3.9 | 96.1 | 0.0 | 1.52 | 0.43 | 0.77 | 2.29 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 16.85 | 0.01 | 2.255 | 13.87 | 1.21 | 4.3 | 95.7 | 0.0 | 1.60 | 1.05 | 0.43 | 0.78 | 2.15 | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7R17 | 14233 | 2024-03-19 | 2022-02-02 | 3.7 | 4.04 | 3.84 | 3.9 | 0.004 | 0.53 | 0.0 | 0.04 | 12.98 | 0.01 | 2.221 | 5.15 | 0.50 | 3.1 | 96.9 | 0.0 | 0.37 | 0.83 | 0.83 | 2.01 | 3.9 | 0.002 | 0.50 | 0.0 | 0.04 | 14.18 | 0.00 | 2.126 | 7.02 | 1.04 | 2.9 | 97.1 | 0.0 | 0.63 | 0.41 | 0.82 | 0.82 | 1.44 | 23626 | 2981 | 7 | 0 | 22 | 0 | 0 | logfile |
✔ | 7oCD | 12804 | 2024-03-16 | 2021-04-26 | 3.5 | 3.46 | — | 3.4 | 0.009 | 0.88 | 0.0 | 0.04 | 12.52 | 0.00 | 2.132 | 7.33 | 0.00 | 5.3 | 94.7 | 0.0 | 0.37 | 0.71 | 0.83 | 3.26 | 3.4 | 0.004 | 0.59 | 0.0 | 0.04 | 14.05 | 0.00 | 2.218 | 8.21 | 1.89 | 3.5 | 96.5 | 0.0 | 1.03 | 1.18 | 0.71 | 0.84 | 2.69 | 13624 | 1920 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 8GNi | 34165 | 2024-03-10 | 2022-08-24 | 3.74 | 3.26 | 3.54 | 3.5 | 0.007 | 1.04 | 0.0 | 0.06 | 14.31 | 0.01 | 1.977 | 10.24 | 0.00 | 5.7 | 94.3 | 0.0 | -3.32 | 0.66 | 0.75 | 1.56 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 16.74 | 0.00 | 2.231 | 14.08 | 2.74 | 4.9 | 95.1 | 0.0 | -0.71 | 0.65 | 0.67 | 0.75 | 1.55 | 5832 | 746 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7EQG | 31265 | 2024-03-20 | 2021-05-01 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.83 | 0.0 | 0.05 | 18.85 | 0.01 | 1.791 | 6.67 | 0.68 | 7.1 | 92.8 | 0.0 | -3.71 | 0.77 | 0.81 | 2.89 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 19.79 | 0.00 | 2.115 | 6.87 | 2.86 | 6.6 | 93.4 | 0.0 | -1.31 | 1.18 | 0.78 | 0.84 | 2.62 | 26301 | 3118 | 17 | 131 | 0 | 0 | 0 | logfile |
✔ | 6N2Y | 9333 | 2024-03-23 | 2018-11-14 | 3.0 | 3.23 | 2.99 | 3.2 | 0.009 | 1.19 | 14.0 | 0.07 | 10.71 | 0.01 | 0.765 | 8.98 | 0.40 | 3.4 | 96.5 | 0.1 | -2.50 | 0.62 | 0.74 | 4.06 | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 14.99 | 0.00 | 1.913 | 11.18 | 2.83 | 3.8 | 96.2 | 0.0 | 0.52 | 1.20 | 0.68 | 0.84 | 3.63 | 35043 | 4696 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 7U9P | 26404 | 2024-03-10 | 2022-03-11 | 3.5 | 3.18 | 3.38 | 3.4 | 0.013 | 1.18 | 0.0 | 0.07 | 10.40 | 0.01 | 2.304 | 2.58 | 0.15 | 11.6 | 88.2 | 0.3 | -4.34 | 0.69 | 0.84 | 4.54 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 13.85 | 0.00 | 2.153 | 5.65 | 3.54 | 5.6 | 94.4 | 0.0 | -2.05 | 0.98 | 0.68 | 0.83 | 3.01 | 6126 | 773 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PDF | 13336 | 2024-03-11 | 2021-08-05 | 3.8 | 3.91 | — | 3.8 | 0.008 | 0.83 | 0.0 | 0.05 | 14.63 | 0.00 | 1.885 | 16.57 | 0.29 | 10.1 | 89.9 | 0.0 | -4.24 | 0.81 | 0.83 | 1.65 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.79 | 0.00 | 1.984 | 13.11 | 1.29 | 4.0 | 96.0 | 0.0 | -0.90 | 0.64 | 0.80 | 0.81 | 1.05 | 6427 | 794 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LBH | 0869 | 2024-03-14 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 15.82 | 0.00 | 2.073 | 15.93 | 2.98 | 6.9 | 93.1 | 0.0 | -1.41 | 0.47 | 0.74 | 0.82 | 2.05 | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R16 | 14232 | 2024-03-19 | 2022-02-02 | 3.5 | 3.73 | 3.58 | 3.6 | 0.005 | 0.61 | 0.0 | 0.05 | 13.28 | 0.00 | 2.241 | 4.72 | 0.19 | 5.2 | 94.8 | 0.0 | -0.43 | 0.80 | 0.83 | 2.18 | 3.6 | 0.003 | 0.70 | 1.0 | 0.04 | 14.58 | 0.00 | 2.139 | 7.06 | 1.94 | 4.5 | 95.5 | 0.0 | -0.29 | 1.58 | 0.80 | 0.83 | 2.11 | 24034 | 3002 | 12 | 0 | 40 | 0 | 0 | logfile |
✔ | 7oDL | 12842 | 2024-03-19 | 2021-04-29 | 3.03 | 2.61 | 2.99 | 2.9 | 0.004 | 0.61 | 0.0 | 0.05 | 14.66 | 0.00 | 2.028 | 2.79 | 0.64 | 5.8 | 94.1 | 0.1 | -1.28 | 0.76 | 0.82 | 3.77 | 2.8 | 0.003 | 0.55 | 0.0 | 0.05 | 15.44 | 0.00 | 2.162 | 2.94 | 2.16 | 5.0 | 94.9 | 0.0 | -0.71 | 1.09 | 0.75 | 0.84 | 3.45 | 24338 | 3066 | 6 | 0 | 33 | 0 | 0 | logfile |
✔ | 7VPD | 32063 | 2024-03-21 | 2021-10-15 | 3.77 | 4.04 | 3.88 | 3.9 | 0.005 | 0.79 | 0.0 | 0.05 | 20.16 | 0.01 | 1.979 | 6.99 | 0.44 | 3.6 | 96.4 | 0.0 | -0.05 | 0.82 | 0.73 | 1.27 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 20.92 | 0.00 | 2.015 | 15.37 | 3.89 | 3.0 | 97.0 | 0.0 | 0.29 | 0.59 | 0.83 | 0.75 | 0.82 | 30924 | 3531 | 14 | 168 | 9 | 0 | 0 | logfile |
✔ | 7TMQ | 25999 | 2024-03-22 | 2022-01-19 | 3.3 | 3.42 | — | 3.4 | 0.004 | 0.57 | 2.0 | 0.04 | 12.67 | 0.00 | 2.026 | 9.95 | 0.38 | 2.7 | 97.3 | 0.0 | 1.28 | 0.77 | 0.83 | 3.33 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 14.02 | 0.00 | 1.988 | 9.28 | 2.27 | 2.4 | 97.6 | 0.0 | 1.33 | 0.26 | 0.79 | 0.86 | 2.88 | 31642 | 4736 | 16 | 0 | 2 | 0 | 0 | logfile |
✔ | 7E3B | 30978 | 2024-03-10 | 2021-02-08 | 4.2 | 4.05 | — | 4.0 | 0.006 | 0.81 | 0.0 | 0.05 | 13.33 | 0.00 | 2.241 | 16.63 | 0.00 | 8.2 | 91.8 | 0.0 | -2.04 | 0.74 | 0.84 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.05 | 12.83 | 0.00 | 2.248 | 14.15 | 0.00 | 5.8 | 94.2 | 0.0 | -1.26 | 0.42 | 0.74 | 0.83 | — | 3299 | 421 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ATF | 15647 | 2024-03-16 | 2022-08-23 | 3.45 | 3.54 | 3.42 | 3.5 | 0.013 | 1.99 | 4.0 | 0.11 | 25.04 | 0.03 | 2.090 | 4.15 | 1.81 | 3.1 | 96.2 | 0.7 | -2.09 | 0.71 | 0.80 | 2.97 | 3.5 | 0.003 | 0.57 | 0.0 | 0.03 | 25.65 | 0.00 | 2.238 | 7.38 | 1.71 | 1.9 | 98.1 | 0.0 | 1.96 | 2.23 | 0.78 | 0.84 | 1.69 | 15719 | 1219 | 13 | 286 | 1 | 0 | 0 | logfile |
✔ | 7NT6 | 12584 | 2024-03-19 | 2021-03-09 | 4.3 | 4.34 | 3.99 | 3.3 | 0.012 | 2.07 | 0.0 | 0.15 | 12.20 | 0.01 | 2.119 | 1.13 | 0.00 | 4.0 | 95.6 | 0.3 | -2.44 | 0.72 | 0.76 | — | 3.2 | 0.004 | 0.78 | 0.0 | 0.06 | 12.44 | 0.00 | 2.090 | 5.43 | 0.00 | 8.3 | 91.6 | 0.0 | 1.02 | 0.72 | 0.71 | 0.78 | — | 24128 | 5582 | 17 | 90 | 0 | 0 | 0 | logfile |
✔ | 6KJ6 | 0700 | 2024-03-25 | 2019-07-21 | 3.8 | 3.90 | 3.82 | 3.8 | 0.009 | 1.10 | 0.0 | 0.06 | 18.21 | 0.01 | 2.084 | 5.30 | 1.08 | 13.9 | 86.0 | 0.1 | -5.39 | 0.81 | 0.83 | 2.38 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 18.46 | 0.00 | 2.045 | 7.88 | 2.81 | 6.8 | 93.2 | 0.0 | -3.21 | 1.51 | 0.83 | 0.83 | 1.65 | 26496 | 3494 | 12 | 97 | 3 | 0 | 0 | logfile |
✔ | 7ET2 | 31296 | 2024-03-23 | 2021-05-12 | 4.2 | 4.39 | — | 4.3 | 0.006 | 1.04 | 0.0 | 0.06 | 16.25 | 0.01 | 2.282 | 6.60 | 0.41 | 4.5 | 95.5 | 0.0 | -4.80 | 0.52 | 0.78 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.34 | 0.00 | 2.088 | 13.98 | 0.10 | 2.8 | 97.2 | 0.0 | -1.35 | 0.69 | 0.45 | 0.78 | — | 38880 | 4812 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F8V | 31493 | 2024-03-11 | 2021-07-02 | 3.3 | 2.62 | — | 3.3 | 0.005 | 0.87 | 0.0 | 0.05 | 14.10 | 0.01 | 2.253 | 7.23 | 0.00 | 4.1 | 95.9 | 0.0 | -1.49 | 0.53 | 0.65 | 1.98 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 16.18 | 0.00 | 2.211 | 14.84 | 2.95 | 4.4 | 95.6 | 0.0 | -0.79 | 0.39 | 0.53 | 0.69 | 1.29 | 6601 | 848 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GDB | 29945 | 2024-03-11 | 2023-03-03 | 3.1 | 3.24 | 3.00 | 3.2 | 0.005 | 0.80 | 0.0 | 0.05 | 14.28 | 0.01 | 2.255 | 3.73 | 0.28 | 4.7 | 95.3 | 0.0 | -0.50 | 0.74 | 0.84 | 3.99 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 14.88 | 0.00 | 2.249 | 3.19 | 1.25 | 4.4 | 95.6 | 0.0 | 0.96 | 1.11 | 0.77 | 0.87 | 3.45 | 7612 | 1037 | 6 | 0 | 1 | 0 | 0 | logfile |