Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C0F	7324	2021-04-03	2017-12-29	3.7	4.02	—	3.7	0.007	1.03	0.0	0.05	14.97	0.01	1.985	10.62	0.28	5.2	94.8	0.1	-2.72	0.82	0.82	1.34	3.7	0.004	0.67	0.0	0.04	15.31	0.00	2.062	18.82	0.02	5.6	94.3	0.0	-0.26	0.89	0.83	0.86	1.27	91742	6845	46	1602	481	0	0	logfile
✔	6RD8	4809	2021-04-02	2019-04-12	3.08	3.22	3.08	3.2	0.008	0.90	0.0	0.05	14.78	0.01	1.790	6.40	0.45	2.3	97.5	0.1	-2.59	0.58	0.85	3.29	3.2	0.003	0.58	0.0	0.04	13.99	0.00	2.034	8.91	0.06	2.3	97.7	0.0	2.49	0.50	0.59	0.87	2.92	17312	2309	25	0	1	18	0	logfile
✔	6RDB	4812	2021-04-04	2019-04-12	2.8	2.89	2.82	2.9	0.008	1.00	0.0	0.06	14.82	0.01	0.351	8.62	1.23	4.1	95.8	0.1	-4.44	0.70	0.84	3.24	2.9	0.009	0.67	0.0	0.04	13.18	0.00	1.894	9.82	0.08	3.7	96.3	0.0	-0.14	0.54	0.71	0.86	3.33	33961	4506	31	0	10	40	0	logfile
✔	6CB1	7445	2021-04-01	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.93	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.006	0.88	0.0	0.05	19.11	0.00	1.996	27.02	0.00	12.5	87.4	0.0	-2.10	2.58	0.75	0.77	—	69945	6459	42	1615	694	0	0	logfile
✔	6LB0	0866	2021-04-04	2019-11-13	3.6	3.79	—	3.7	0.006	0.86	0.0	0.05	13.62	0.01	0.919	7.46	0.00	6.5	93.5	0.0	-3.90	0.74	0.89	4.20	3.7	0.004	0.62	0.0	0.04	12.41	0.00	2.072	6.99	0.00	6.4	93.6	0.0	-1.66	0.51	0.74	0.89	4.19	148140	19440	60	0	0	0	0	logfile
✔	6RDA	4811	2021-04-02	2019-04-12	3.04	3.20	2.92	3.1	0.013	1.04	0.0	0.06	13.77	0.01	2.075	3.87	0.58	5.1	94.7	0.3	-5.84	0.57	0.86	3.66	3.1	0.003	0.62	0.0	0.04	13.68	0.00	2.067	7.06	0.00	3.6	96.4	0.0	1.08	1.58	0.58	0.87	3.02	19856	2597	18	0	1	30	0	logfile
✔	6RFR	4873	2021-04-05	2019-04-16	3.2	3.36	—	3.4	0.012	1.52	2.0	0.93	11.67	0.01	2.078	8.36	0.16	6.0	93.9	0.1	-3.68	0.74	0.81	2.59	3.4	0.008	1.51	0.0	0.28	13.59	0.00	1.259	9.37	0.04	4.0	95.9	0.0	0.23	2.75	0.76	0.86	2.98	65934	8057	65	0	49	0	0	logfile
✔	6RD7	4808	2021-04-02	2019-04-12	2.73	2.87	2.70	2.9	0.006	0.89	0.0	0.05	13.56	0.01	1.905	7.85	0.84	1.5	98.3	0.2	-1.88	0.58	0.85	2.96	2.9	0.003	0.55	0.0	0.04	12.65	0.00	2.121	7.20	0.06	2.6	97.4	0.0	2.54	0.53	0.59	0.86	3.24	17406	2309	26	0	1	113	0	logfile
✔	6DW1	8923	2021-04-01	2018-06-26	3.1	3.36	—	3.3	0.005	0.89	0.0	0.05	11.31	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.003	0.64	0.0	0.04	13.46	0.00	2.141	9.11	0.00	5.5	94.5	0.0	-1.27	1.19	0.69	0.84	4.54	8595	1046	9	0	24	0	0	logfile
✔	6Q9B	4479	2021-04-04	2018-12-17	3.9	4.08	3.88	4.0	0.008	1.27	0.0	0.15	12.11	0.01	2.212	6.17	0.27	11.3	88.6	0.1	-3.94	0.68	0.78	1.64	4.0	0.004	0.87	0.0	0.05	14.27	0.01	2.074	15.27	0.05	10.1	89.9	0.0	-0.36	1.66	0.68	0.79	1.16	38012	4627	37	0	13	0	0	logfile
✔	6HS7	0264	2021-04-05	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.73	0.0	0.04	14.10	0.00	2.092	11.23	0.04	8.4	91.6	0.0	-1.89	0.98	0.80	0.72	—	52890	6905	25	0	0	0	0	logfile
✔	6TAP	10423	2021-04-25	2019-10-30	3.5	2.55	—	2.5	0.006	0.87	120.0	0.06	14.78	0.01	1.801	16.69	0.33	7.8	92.2	0.0	-1.90	0.75	0.75	2.23	2.4	0.002	0.57	0.0	0.04	14.79	0.00	2.116	2.95	0.02	4.2	95.8	0.0	1.01	0.82	0.79	0.78	2.62	337140	41160	300	0	60	0	0	logfile
✔	6RFS	4874	2021-04-05	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.20	0.01	2.078	8.85	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	12.01	0.00	2.075	17.13	0.02	6.3	93.7	0.0	-0.47	1.40	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	6QDW	4531	2021-04-03	2019-01-03	2.83	2.94	2.82	2.9	0.013	1.10	0.0	0.06	17.39	0.01	1.901	6.25	1.25	7.1	92.7	0.2	-4.19	0.71	0.83	2.54	2.9	0.004	0.59	0.0	0.04	15.95	0.00	2.064	9.79	0.51	5.2	94.8	0.0	-1.10	1.30	0.78	0.89	3.58	90690	3127	32	3081	0	0	0	logfile
✔	6RFQ	4872	2021-04-05	2019-04-16	3.3	3.42	—	3.4	0.013	1.55	3.0	0.96	11.42	0.01	1.889	9.26	0.17	7.0	92.8	0.1	-4.08	0.69	0.79	1.90	3.4	0.008	1.54	0.0	0.29	13.61	0.00	1.553	10.76	0.05	4.7	95.3	0.0	-0.30	0.92	0.73	0.85	2.47	62052	7637	59	0	36	0	0	logfile
✔	6TA1	10420	2021-04-07	2019-10-29	3.1	3.28	3.09	3.3	0.010	1.16	8.0	0.06	10.77	0.01	1.843	8.59	1.58	5.6	94.3	0.1	-4.32	0.71	0.79	3.51	3.3	0.004	0.68	0.0	0.05	13.31	0.00	2.024	10.13	0.00	4.4	95.6	0.0	-0.49	1.39	0.73	0.81	2.74	178050	22686	24	0	12	0	0	logfile
✔	6SAG	10130	2021-04-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6QCC	4504	2021-04-15	2018-12-27	3.22	3.33	3.23	3.3	0.003	0.50	0.0	0.05	11.43	0.01	2.289	4.45	5.96	3.5	96.5	0.0	-2.89	0.72	0.87	4.06	3.3	0.007	0.66	0.0	0.05	12.19	0.00	2.128	6.05	0.29	4.5	95.5	0.0	-1.19	1.98	0.71	0.88	4.25	255120	33120	120	0	0	0	0	logfile
✔	6QC5	4497	2021-04-05	2018-12-26	4.3	4.44	4.37	4.3	0.009	1.29	0.0	1.03	11.74	0.01	2.162	7.99	0.72	12.3	87.5	0.2	-4.12	0.64	0.77	—	4.3	0.009	1.71	0.0	0.31	13.77	0.01	1.245	18.75	0.01	10.8	89.2	0.0	-1.28	1.08	0.65	0.78	—	65691	8136	57	0	16	0	0	logfile
✔	6QC6	4498	2021-04-05	2018-12-27	4.1	4.24	4.39	4.2	0.006	1.20	0.0	1.04	11.31	0.01	2.082	6.22	0.55	10.3	89.6	0.1	-4.07	0.65	0.77	—	4.1	0.009	1.72	0.0	0.31	13.81	0.01	2.032	17.17	0.04	10.4	89.6	0.0	-1.23	3.00	0.66	0.80	—	65344	8085	58	0	18	0	0	logfile

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