Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NF8	9362	2022-05-13	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.68	0.00	2.019	12.91	0.19	5.5	94.5	0.0	-0.34	2.59	0.84	0.79	1.23	65776	5509	32	952	147	0	0	logfile
✔	6QEX	4539	2022-05-13	2019-01-08	3.6	3.83	—	3.8	0.009	1.23	0.0	0.10	15.49	0.01	1.406	8.37	0.73	6.0	93.9	0.1	-3.39	0.62	0.73	1.80	3.8	0.003	0.63	0.0	0.04	16.47	0.00	2.174	9.04	0.58	3.6	96.4	0.0	0.47	0.60	0.65	0.73	1.33	13251	1627	4	0	22	0	0	logfile
✔	6T9i	10412	2022-05-18	2019-10-28	3.9	3.67	—	3.4	0.007	1.00	0.0	0.06	15.35	0.01	1.047	6.74	0.97	7.5	92.5	0.1	-4.38	0.80	0.74	1.54	3.4	0.006	0.87	1.0	0.04	16.47	0.01	1.897	13.68	0.13	6.8	93.2	0.0	-0.32	1.26	0.81	0.77	1.20	48821	6047	12	0	0	0	0	logfile
✔	6VYB	21457	2022-05-15	2020-02-25	3.2	3.72	—	3.6	0.014	1.36	1.0	0.09	10.35	0.01	2.299	0.69	0.13	2.4	97.5	0.1	0.50	0.77	0.78	2.94	3.6	0.004	0.58	0.0	0.04	13.28	0.00	2.172	5.93	0.40	2.9	97.1	0.0	0.40	0.63	0.75	0.79	2.86	22365	2875	6	0	59	0	0	logfile
✔	6UCV	20729	2022-05-13	2019-09-17	4.1	4.53	—	4.2	0.005	0.94	0.0	0.05	10.24	0.01	2.210	5.55	0.00	2.8	97.2	0.0	-1.87	0.60	0.78	—	4.2	0.004	0.66	0.0	0.04	11.68	0.00	2.029	11.14	0.00	2.9	97.1	0.0	1.40	1.38	0.61	0.82	—	15102	1947	22	0	2	0	0	logfile
✔	6RD6	4807	2022-05-12	2019-04-12	2.75	2.89	2.74	2.8	0.006	0.82	0.0	0.05	13.67	0.01	2.306	4.62	0.38	2.5	97.5	0.0	-3.09	0.62	0.85	3.36	2.8	0.004	0.56	0.0	0.04	15.57	0.00	2.184	6.41	1.14	2.5	97.5	0.0	2.19	1.13	0.61	0.86	3.18	7758	1035	10	0	0	32	0	logfile
✔	6NUD	0516	2022-05-14	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.86	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.010	1.13	1.0	0.04	16.83	0.01	1.504	18.57	0.29	9.3	90.7	0.0	-3.09	1.67	0.73	0.76	2.01	20831	2420	13	68	1	0	0	logfile
✔	6UWR	20926	2022-05-15	2019-11-05	2.8	2.93	—	2.9	0.007	0.73	0.0	0.05	17.63	0.00	2.020	8.84	11.21	9.9	89.9	0.2	-3.69	0.76	0.87	3.55	2.9	0.003	0.65	0.0	0.05	17.21	0.00	2.139	8.29	5.45	7.6	92.4	0.0	-1.14	0.47	0.75	0.87	3.14	72758	9240	28	0	42	0	0	logfile
✔	6JX7	9891	2022-05-16	2019-04-22	3.31	3.76	3.45	3.7	0.009	1.20	3.0	0.10	13.96	0.02	2.092	8.88	0.82	12.3	87.4	0.3	-5.20	0.57	0.71	2.29	3.7	0.003	0.69	0.0	0.05	15.69	0.00	2.076	10.75	0.61	11.3	88.7	0.0	-2.44	0.64	0.64	0.83	1.93	32115	3735	6	0	219	0	0	logfile
✔	6KHi	9989	2022-05-16	2019-07-15	3.0	3.34	—	3.3	0.008	1.25	0.0	0.09	16.08	0.01	2.257	7.33	0.27	8.9	91.0	0.0	-4.35	0.73	0.84	2.98	3.2	0.003	0.69	0.0	0.04	16.69	0.00	2.152	12.89	2.22	8.5	91.5	0.0	-0.53	1.13	0.74	0.86	2.71	32635	4095	29	0	19	0	0	logfile
✔	6VQV	21358	2022-05-15	2020-02-06	2.57	2.88	2.74	2.8	0.010	1.12	3.0	0.06	12.89	0.01	2.253	5.19	1.16	8.6	91.3	0.1	-3.98	0.68	0.80	3.74	2.8	0.009	0.84	0.0	0.05	15.71	0.01	2.075	10.22	1.74	8.2	91.8	0.0	-1.90	1.07	0.68	0.81	2.78	24676	2990	12	60	0	0	0	logfile
✔	6RWM	10042	2022-05-14	2019-06-05	2.81	3.05	2.89	3.0	0.012	0.85	0.0	0.05	16.84	0.01	2.005	2.82	3.20	3.9	96.1	0.0	-2.80	0.67	0.81	3.78	3.0	0.002	0.54	0.0	0.04	19.42	0.00	1.897	4.80	2.57	3.0	97.0	0.0	1.28	0.52	0.67	0.83	3.12	18450	2076	36	86	16	108	0	logfile
✔	6F1Z	4172	2022-05-12	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	6VEN	21157	2022-05-15	2020-01-02	3.37	3.59	3.32	3.4	0.004	0.71	0.0	0.04	23.41	0.01	2.184	9.99	0.05	6.0	94.0	0.0	-3.46	0.84	0.85	1.86	3.4	0.003	0.63	0.0	0.04	23.72	0.00	2.066	10.12	0.15	4.1	95.9	0.0	-0.75	1.21	0.84	0.86	1.51	24028	2271	19	292	2	0	0	logfile
✔	6B3R	7042	2022-05-17	2017-09-22	3.8	3.79	—	3.8	0.006	1.04	0.0	0.06	10.17	0.01	2.247	4.98	0.25	8.1	91.9	0.0	-4.41	0.35	0.53	1.24	3.8	0.013	1.32	4.0	0.04	15.45	0.01	1.532	15.28	0.14	7.0	92.9	0.0	-0.32	0.97	0.39	0.55	1.23	35718	4506	6	0	48	0	0	logfile
✔	6CDE	7459	2022-05-16	2018-02-08	3.8	4.08	—	3.9	0.007	0.94	0.0	0.10	9.91	0.01	1.655	8.88	0.21	6.0	94.0	0.0	-3.29	0.77	0.84	3.13	3.9	0.003	0.65	0.0	0.05	13.52	0.00	2.206	10.15	0.45	4.6	95.4	0.0	-1.13	0.68	0.78	0.85	2.87	32973	3846	30	0	222	0	0	logfile
✔	6QEE	4536	2022-05-13	2019-01-07	3.9	4.04	—	3.9	0.011	1.36	0.0	0.18	15.51	0.01	2.223	6.01	1.09	5.9	94.0	0.1	-4.04	0.68	0.82	2.04	3.9	0.003	0.69	0.0	0.04	16.22	0.00	2.214	10.68	0.29	4.2	95.8	0.0	-0.27	0.57	0.67	0.78	1.19	12975	1627	4	0	13	0	0	logfile
✔	6DRV	8908	2022-05-16	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.44	0.0	0.08	12.56	0.02	2.116	4.83	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.003	0.66	0.0	0.04	16.32	0.00	2.148	6.62	1.08	2.7	97.3	0.0	0.31	1.48	0.74	0.89	5.98	32888	4096	4	0	0	0	0	logfile
✔	6QC2	4494	2022-05-17	2018-12-26	4.2	4.29	4.30	4.2	0.009	1.24	1.0	0.85	11.75	0.01	1.942	7.65	0.57	11.4	88.5	0.1	-3.91	0.69	0.76	—	4.2	0.008	1.50	1.0	0.26	13.39	0.01	1.949	16.12	0.05	9.0	91.0	0.0	-1.22	0.98	0.70	0.78	—	96938	12000	83	0	93	0	0	logfile
✔	6QC6	4498	2022-05-13	2018-12-27	4.1	4.24	4.15	4.2	0.006	1.18	0.0	1.03	11.39	0.01	2.082	6.27	0.55	10.3	89.6	0.1	-4.07	0.65	0.77	—	4.1	0.009	1.72	0.0	0.31	13.58	0.01	2.103	17.20	0.03	10.0	90.0	0.0	-1.33	1.06	0.66	0.79	—	65344	8085	58	0	18	0	0	logfile

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