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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RAY | 4787 | 2022-12-20 | 2019-04-08 | 4.28 | 4.39 | 4.31 | 4.4 | 0.013 | 1.77 | 39.0 | 0.16 | 18.46 | 0.02 | 1.031 | 19.83 | 7.45 | 17.4 | 81.8 | 0.8 | -5.68 | 0.58 | 0.59 | — | 4.3 | 0.003 | 0.82 | 0.0 | 0.04 | 15.26 | 0.00 | 2.087 | 16.75 | 0.07 | 11.9 | 88.0 | 0.0 | -3.33 | 1.15 | 0.61 | 0.59 | — | 39071 | 4887 | 18 | 13 | 6 | 0 | 0 | logfile |
✔ | 6RQL | 4984 | 2022-12-22 | 2019-05-16 | 2.9 | 2.93 | — | 3.0 | 0.009 | 1.09 | 1.0 | 0.06 | 12.93 | 0.01 | 1.977 | 6.69 | 0.74 | 8.3 | 91.7 | 0.0 | -4.74 | 0.60 | 0.67 | 2.47 | 2.9 | 0.003 | 0.65 | 0.0 | 0.04 | 17.08 | 0.00 | 2.121 | 10.07 | 3.10 | 5.8 | 94.2 | 0.0 | -0.68 | 1.62 | 0.70 | 0.75 | 2.02 | 51626 | 6246 | 20 | 84 | 0 | 0 | 0 | logfile |
✔ | 6KXS | 0782 | 2022-12-14 | 2019-09-12 | 3.4 | 3.50 | — | 3.4 | 0.018 | 1.44 | 0.0 | 0.09 | 15.88 | 0.01 | 2.157 | 9.02 | 3.30 | 15.2 | 84.4 | 0.4 | -4.73 | 0.70 | 0.72 | 2.54 | 3.4 | 0.003 | 0.69 | 0.0 | 0.05 | 16.61 | 0.00 | 2.148 | 11.56 | 0.51 | 8.8 | 91.2 | 0.0 | -2.11 | 0.56 | 0.71 | 0.75 | 2.08 | 22499 | 2869 | 23 | 0 | 12 | 0 | 0 | logfile |
✔ | 6U2K | 20621 | 2022-12-11 | 2019-08-20 | 2.93 | 3.31 | 3.29 | 3.3 | 0.010 | 0.98 | 0.0 | 0.06 | 10.03 | 0.01 | 2.354 | 3.34 | 0.19 | 9.7 | 90.3 | 0.0 | -4.70 | 0.70 | 0.83 | 4.65 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 15.05 | 0.00 | 2.275 | 6.57 | 2.12 | 8.2 | 91.8 | 0.0 | -2.00 | 1.20 | 0.65 | 0.81 | 2.97 | 4719 | 604 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SB3 | 10134 | 2022-12-15 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.95 | 0.00 | 2.104 | 13.36 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 16.11 | 0.01 | 2.025 | 19.45 | 0.76 | 8.0 | 92.0 | 0.0 | -1.75 | 1.63 | 0.71 | 0.77 | 0.99 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6EZM | 4160 | 2022-12-20 | 2017-11-15 | 3.2 | 3.09 | — | 3.1 | 0.010 | 1.28 | 0.0 | 0.06 | 10.27 | 0.01 | 1.913 | 8.89 | 0.10 | 10.0 | 90.0 | 0.0 | -4.97 | 0.79 | 0.82 | 4.74 | 3.1 | 0.004 | 0.69 | 0.0 | 0.05 | 15.82 | 0.01 | 2.051 | 10.65 | 0.23 | 8.3 | 91.7 | 0.0 | -1.00 | 1.99 | 0.81 | 0.86 | 3.43 | 38400 | 5088 | 38 | 0 | 72 | 0 | 0 | logfile |
✔ | 6SKY | 10231 | 2022-12-14 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.80 | 0.00 | 2.077 | 5.12 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 16.48 | 0.00 | 2.102 | 5.19 | 2.81 | 2.1 | 97.9 | 0.0 | 1.58 | 2.20 | 0.73 | 0.85 | 2.38 | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2022-12-20 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 24.00 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.003 | 0.82 | 0.0 | 0.04 | 18.26 | 0.00 | 2.110 | 14.46 | 0.56 | 10.5 | 89.5 | 0.0 | -2.93 | 1.49 | 0.56 | 0.54 | 0.32 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 6MPH | 9189 | 2022-12-16 | 2018-10-06 | 3.8 | 4.28 | — | 3.9 | 0.006 | 0.79 | 0.0 | 0.05 | 12.56 | 0.01 | 2.286 | 6.16 | 6.01 | 5.3 | 94.6 | 0.2 | -3.46 | 0.84 | 0.85 | 2.34 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 14.24 | 0.00 | 2.068 | 13.92 | 0.33 | 5.2 | 94.8 | 0.0 | -1.06 | 0.76 | 0.84 | 0.85 | 2.02 | 32092 | 3843 | 72 | 0 | 155 | 0 | 0 | logfile |
✔ | 6iZR | 9757 | 2022-12-16 | 2018-12-20 | 4.7 | 4.86 | — | 4.7 | 0.004 | 0.90 | 0.0 | 0.05 | 11.50 | 0.01 | 2.086 | 6.64 | 0.26 | 6.9 | 93.1 | 0.0 | -4.07 | 0.68 | 0.78 | — | 4.7 | 0.004 | 0.86 | 0.0 | 0.05 | 12.98 | 0.00 | 2.077 | 22.21 | 0.00 | 6.6 | 93.4 | 0.0 | -0.51 | 2.07 | 0.66 | 0.71 | — | 84360 | 10470 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 6RAW | 4785 | 2022-12-20 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.64 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 18.41 | 0.01 | 2.107 | 15.65 | 0.77 | 12.1 | 87.9 | 0.0 | -3.08 | 3.97 | 0.58 | 0.62 | 0.54 | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |
✔ | 6D6Q | 7808 | 2022-12-16 | 2018-04-22 | 3.45 | 3.57 | — | 3.5 | 0.006 | 0.74 | 0.0 | 0.05 | 10.12 | 0.00 | 1.778 | 9.91 | 0.06 | 9.9 | 90.1 | 0.0 | -4.46 | 0.79 | 0.77 | 2.28 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 15.12 | 0.00 | 2.129 | 10.56 | 0.24 | 4.3 | 95.7 | 0.0 | -0.46 | 0.88 | 0.82 | 0.83 | 1.58 | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2022-12-12 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 15.52 | 0.00 | 2.168 | 13.94 | 0.20 | 4.0 | 96.0 | 0.0 | 1.04 | 1.17 | 0.72 | 0.84 | 0.66 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KLB | 0705 | 2022-12-14 | 2019-07-30 | 4.1 | 4.14 | — | 4.0 | 0.004 | 0.90 | 1.0 | 0.05 | 11.32 | 0.01 | 2.015 | 8.05 | 0.31 | 9.0 | 90.8 | 0.2 | -5.01 | 0.66 | 0.55 | — | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.30 | 0.00 | 1.885 | 15.29 | 0.00 | 9.8 | 90.2 | 0.0 | -1.69 | 2.90 | 0.68 | 0.59 | — | 21384 | 2467 | 11 | 50 | 4 | 11 | 0 | logfile |
✔ | 6QXM | 4669 | 2022-12-19 | 2019-03-07 | 4.1 | 2.35 | — | 3.5 | 0.008 | 1.25 | 0.0 | 0.06 | 18.91 | 0.01 | 2.333 | 6.84 | 8.63 | 9.3 | 90.7 | 0.0 | -4.78 | 0.68 | 0.67 | — | 2.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.70 | 0.00 | 2.096 | 11.00 | 0.10 | 5.4 | 94.6 | 0.0 | -1.31 | 1.63 | 0.66 | 0.65 | — | 37164 | 4704 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6TNY | 10539 | 2022-12-14 | 2019-12-10 | 3.08 | 3.41 | — | 3.1 | 0.009 | 1.10 | 2.0 | 0.06 | 17.58 | 0.01 | 1.826 | 8.80 | 0.83 | 6.4 | 93.2 | 0.3 | -3.49 | 0.83 | 0.76 | 2.04 | 3.1 | 0.004 | 0.71 | 0.0 | 0.04 | 18.11 | 0.00 | 2.126 | 9.52 | 0.39 | 6.0 | 94.0 | 0.0 | -0.66 | 0.75 | 0.86 | 0.82 | 1.94 | 19726 | 2399 | 10 | 50 | 3 | 0 | 0 | logfile |
✔ | 6GEJ | 4395 | 2022-12-21 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.57 | 0.00 | 1.491 | 9.17 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 20.51 | 0.00 | 0.867 | 10.76 | 0.38 | 4.4 | 95.6 | 0.0 | -0.05 | 0.83 | 0.83 | 0.80 | 0.97 | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✔ | 6ME0 | 9105 | 2022-12-14 | 2018-09-05 | 3.6 | 3.74 | — | 3.6 | 0.010 | 1.16 | 0.0 | 0.05 | 17.63 | 0.01 | 1.531 | 13.75 | 0.00 | 11.8 | 88.2 | 0.0 | -5.11 | 0.89 | 0.81 | 2.89 | 3.6 | 0.005 | 0.67 | 0.0 | 0.03 | 17.39 | 0.00 | 1.842 | 19.43 | 0.28 | 13.2 | 86.8 | 0.0 | -2.26 | 1.22 | 0.89 | 0.82 | 2.07 | 21539 | 414 | 4 | 845 | 33 | 0 | 0 | logfile |
✔ | 6o84 | 0650 | 2022-12-11 | 2019-03-08 | 3.92 | 4.04 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.01 | 0.00 | 2.350 | 2.97 | 0.64 | 4.9 | 95.1 | 0.0 | -5.68 | 0.60 | 0.82 | 2.21 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.21 | 0.00 | 2.150 | 8.65 | 0.64 | 5.2 | 94.8 | 0.0 | 1.37 | 1.29 | 0.60 | 0.82 | 2.24 | 6224 | 712 | 2 | 0 | 118 | 0 | 0 | logfile |