Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U9o	26402	2023-07-04	2022-03-11	3.4	3.12	3.37	3.4	0.007	0.92	0.0	0.06	9.99	0.01	2.330	1.94	0.28	9.5	90.3	0.1	-4.13	0.71	0.84	4.52	3.4	0.002	0.62	0.0	0.04	14.33	0.01	2.099	5.43	0.41	5.6	94.4	0.0	-1.66	1.13	0.69	0.85	3.36	6563	829	6	0	3	0	0	logfile
✔	6T8B	10399	2023-07-09	2019-10-24	3.65	3.73	—	3.7	0.004	0.72	0.0	0.05	12.10	0.01	1.942	14.10	0.00	7.2	92.8	0.0	-4.40	0.76	0.83	2.47	3.7	0.004	0.71	0.0	0.05	16.55	0.00	1.868	13.84	0.40	6.0	94.0	0.0	-1.41	0.71	0.79	0.84	1.76	19077	2370	14	40	10	0	0	logfile
✔	6Z16	11027	2023-07-14	2020-05-12	2.98	2.98	—	3.1	0.008	1.13	0.0	0.06	12.51	0.01	2.238	3.49	0.10	4.5	95.5	0.0	-2.64	0.73	0.83	3.55	3.1	0.003	0.69	0.0	0.04	15.59	0.00	2.056	11.04	1.91	4.2	95.8	0.0	1.13	1.31	0.74	0.83	2.71	30250	3744	24	0	30	0	0	logfile
✔	6CMo	7517	2023-07-06	2018-03-05	4.5	4.24	—	4.2	0.004	1.00	0.0	0.06	10.43	0.01	2.181	3.92	0.08	1.3	98.7	0.0	-1.97	0.59	0.68	—	4.2	0.003	0.71	0.0	0.04	12.67	0.00	2.170	10.28	0.16	3.4	96.6	0.0	-0.65	0.80	0.59	0.67	—	11834	1516	7	0	2	0	0	logfile
✔	7NSB	12563	2023-07-07	2021-03-05	3.7	3.60	3.62	3.7	0.004	0.70	0.0	0.05	13.75	0.00	2.214	8.33	0.00	11.5	88.5	0.0	-2.03	0.73	0.82	2.57	3.7	0.003	0.63	0.0	0.04	15.38	0.00	2.139	7.84	0.37	10.4	89.6	0.0	-1.04	0.31	0.73	0.82	1.63	13474	1775	4	0	0	0	0	logfile
✔	7KY7	23070	2023-07-05	2020-12-07	3.08	3.38	—	3.3	0.004	0.70	0.0	0.05	15.08	0.00	1.705	14.99	1.01	7.0	92.9	0.1	-3.55	0.70	0.81	2.28	3.3	0.004	0.60	0.0	0.04	16.27	0.00	1.972	10.92	0.46	6.4	93.6	0.0	-1.19	1.10	0.68	0.82	2.41	10294	1247	8	0	17	0	0	logfile
✔	8H77	34519	2023-07-08	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.60	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.004	0.66	0.0	0.04	17.53	0.00	0.978	10.16	0.29	4.2	95.8	0.0	-0.93	0.69	0.69	0.77	2.13	15726	1930	8	0	4	0	0	logfile
✔	6ZGi	11207	2023-07-12	2020-06-18	2.9	3.12	3.02	3.1	0.007	0.80	0.0	0.05	12.59	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.61	0.0	0.05	14.88	0.00	2.134	2.68	1.25	4.4	95.6	0.0	-0.48	1.19	0.75	0.85	3.95	26901	3294	33	0	78	0	0	logfile
✔	7JZH	22531	2023-07-09	2020-09-02	3.59	3.46	—	3.5	0.006	0.96	4.0	0.06	20.56	0.01	2.095	16.68	16.34	8.7	91.3	0.0	-3.42	0.56	0.73	1.23	3.6	0.004	0.76	0.0	0.04	19.32	0.00	2.126	10.99	0.94	5.6	94.4	0.0	-0.44	1.64	0.60	0.74	1.27	20328	2562	6	0	0	0	0	logfile
✔	8EG0	28108	2023-07-04	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	11.73	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.004	0.55	0.0	0.04	13.47	0.00	2.195	11.32	0.00	2.3	97.7	0.0	1.60	0.57	0.90	0.85	1.98	6031	584	4	65	0	0	0	logfile
✔	5ZX5	6975	2023-07-12	2018-05-18	3.28	3.43	—	3.4	0.016	1.41	0.0	0.08	11.53	0.01	2.270	11.04	2.12	4.0	95.8	0.2	-4.97	0.69	0.81	3.74	3.4	0.003	0.69	0.0	0.04	15.79	0.00	2.240	7.52	0.20	4.0	96.0	0.0	0.38	0.69	0.71	0.84	2.04	25440	3256	8	0	12	0	0	logfile
✔	7YPB	33998	2023-07-12	2022-08-03	3.48	3.51	3.48	3.5	0.003	0.57	0.0	0.04	13.92	0.00	2.184	2.96	0.04	2.8	97.2	0.0	-4.01	0.71	0.72	1.57	3.5	0.003	0.60	0.0	0.04	16.63	0.00	1.982	8.35	0.34	3.4	96.6	0.0	-0.49	1.29	0.77	0.83	1.80	25626	3133	10	55	3	0	0	logfile
✔	7ZH2	14718	2023-07-11	2022-04-05	2.71	2.24	2.66	2.5	0.003	0.62	0.0	0.04	13.21	0.00	2.038	2.41	0.30	3.3	96.6	0.1	-0.81	0.73	0.81	3.90	2.5	0.003	0.61	0.0	0.05	15.62	0.00	2.217	3.10	1.74	4.6	95.4	0.0	-0.72	0.39	0.74	0.83	4.04	24419	3060	9	0	36	0	0	logfile
✔	7NV0	12601	2023-07-05	2021-03-15	3.4	2.96	—	2.9	0.011	1.13	0.0	0.06	19.63	0.01	2.205	8.09	1.30	8.1	91.9	0.0	-4.56	0.60	0.68	2.36	2.9	0.003	0.68	0.0	0.04	20.46	0.00	1.491	12.21	0.54	2.2	97.8	0.0	-0.94	0.71	0.58	0.69	1.64	9928	1180	7	53	1	0	0	logfile
✔	7TMP	25998	2023-07-15	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.91	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.003	0.54	0.0	0.04	14.07	0.00	1.940	8.56	0.29	2.9	97.1	0.0	1.21	0.28	0.79	0.86	2.88	32105	4805	16	0	2	0	0	logfile
✔	7R15	14231	2023-07-11	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.57	0.0	0.05	13.87	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.003	0.57	0.0	0.04	14.11	0.00	2.136	11.06	0.04	5.1	94.9	0.0	-0.86	0.36	0.85	0.83	—	24100	3000	9	0	43	0	0	logfile
✔	6LZ1	30021	2023-07-16	2020-02-17	3.2	3.36	3.57	3.3	0.005	0.61	0.0	0.05	15.47	0.00	2.099	11.03	2.52	7.7	92.3	0.0	-3.40	0.87	0.86	3.56	3.3	0.003	0.58	0.0	0.04	16.25	0.00	2.061	10.26	0.42	6.5	93.5	0.0	-1.37	0.36	0.86	0.87	3.47	34492	4304	8	0	4	0	0	logfile
✔	7WB1	32392	2023-07-06	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	19.51	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.003	0.61	0.0	0.04	20.37	0.00	2.084	14.67	0.00	5.2	94.8	0.0	0.33	1.01	0.83	0.76	1.29	11524	960	4	178	0	0	0	logfile
✔	6YKM	10828	2023-07-05	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.61	0.0	0.04	14.94	0.00	2.163	9.05	0.00	2.7	97.3	0.0	0.97	1.08	0.69	0.88	2.54	10434	1357	10	0	0	8	0	logfile
✔	7oD3	12818	2023-07-11	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.61	0.0	0.05	14.00	0.00	1.953	2.55	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.007	0.78	0.0	0.05	16.38	0.01	2.113	3.07	2.32	5.5	94.5	0.0	-0.87	0.30	0.75	0.85	3.90	24222	3036	6	0	36	0	0	logfile

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