Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X2C	22001	2022-07-05	2020-05-20	3.2	3.70	3.22	3.6	0.006	0.89	0.0	0.05	9.04	0.01	2.257	4.03	0.12	4.3	95.6	0.0	-3.93	0.76	0.77	3.04	3.6	0.006	0.86	0.0	0.04	12.25	0.01	2.181	9.88	0.08	3.8	96.2	0.0	-0.66	1.43	0.77	0.81	2.67	22827	2916	3	0	0	0	0	logfile
✔	6X2A	21999	2022-07-05	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.75	4.0	0.09	12.51	0.01	2.552	0.29	1.64	6.3	93.3	0.4	-1.33	0.81	0.82	3.41	3.8	0.004	0.61	0.0	0.04	13.32	0.00	2.215	6.50	0.13	4.0	95.9	0.0	0.25	2.19	0.79	0.80	2.85	21562	2875	3	0	0	0	0	logfile
✔	6X2B	22000	2022-07-04	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.42	2.08	6.7	92.9	0.4	-1.72	0.77	0.76	2.50	3.9	0.003	0.59	0.0	0.04	13.15	0.00	2.210	6.18	0.09	3.7	96.3	0.0	0.42	0.50	0.83	0.82	2.05	21120	2861	3	0	0	0	0	logfile
✔	7JPS	22421	2022-07-04	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.40	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.8	0.004	0.72	0.0	0.04	16.33	0.00	1.876	20.20	0.00	5.4	94.6	0.0	-0.52	1.56	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	7JPR	22420	2022-07-04	2020-08-09	4.0	4.90	—	3.3	0.006	1.20	0.0	0.06	15.00	0.01	2.048	5.61	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	3.6	0.003	0.72	0.0	0.04	16.55	0.00	1.924	17.21	0.21	3.2	96.8	0.0	0.50	0.91	0.86	0.76	—	16737	2045	8	0	6	0	0	logfile
✔	6TD6	10464	2022-07-04	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.004	0.69	0.0	0.04	14.83	0.00	1.896	20.31	0.00	11.6	88.4	0.0	-1.62	1.43	0.60	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6ZN5	11310	2022-07-05	2020-07-06	3.2	3.14	—	3.1	0.011	1.16	0.0	0.06	17.50	0.01	2.124	5.13	0.53	6.9	92.9	0.1	-4.30	0.80	0.80	2.26	3.1	0.006	0.73	1.0	0.04	17.59	0.01	2.059	10.39	0.38	5.8	94.2	0.0	-1.36	0.44	0.80	0.80	1.96	79377	5478	39	1671	3	0	0	logfile
✔	6L54	0837	2022-07-05	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.74	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.011	0.97	0.0	0.04	14.18	0.01	1.792	71.56	0.25	12.8	87.2	0.0	-2.18	0.75	0.81	0.78	2.03	20387	2608	3	0	2	0	857	logfile
✔	6S2E	10088	2022-07-03	2019-06-20	4.2	4.38	4.22	4.2	0.009	1.53	0.0	0.13	14.14	0.01	2.218	7.85	1.88	4.7	95.2	0.1	-1.45	0.81	0.75	—	4.2	0.004	0.73	0.0	0.04	13.40	0.00	2.088	18.19	0.00	4.1	95.9	0.0	-0.02	1.28	0.81	0.76	—	12459	1539	4	0	1	0	0	logfile
✔	7JPo	22417	2022-07-04	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.48	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.003	0.54	0.0	0.04	16.94	0.00	1.955	5.65	0.22	2.5	97.5	0.0	0.72	0.45	0.80	0.83	1.82	16087	1966	9	0	7	0	0	logfile
✔	6T0R	10357	2022-07-04	2019-10-03	2.82	2.90	2.91	2.9	0.005	0.66	0.0	0.05	13.99	0.01	2.279	4.12	4.99	3.5	96.5	0.0	-2.98	0.69	0.85	3.55	2.9	0.003	0.53	0.0	0.04	16.56	0.00	2.062	7.84	2.66	2.9	97.1	0.0	0.69	1.03	0.71	0.86	3.04	14120	1690	7	20	0	31	0	logfile
✔	7CH1	30368	2022-07-03	2020-07-03	2.6	2.70	—	2.8	0.007	0.87	0.0	0.06	15.52	0.01	2.218	3.49	6.10	4.3	95.6	0.2	-5.35	0.66	0.86	3.92	2.7	0.003	0.58	0.0	0.04	14.77	0.00	2.212	4.49	1.39	3.6	96.4	0.0	2.00	1.21	0.69	0.88	2.82	9948	1280	6	0	6	76	0	logfile
✔	6TW1	10603	2022-07-04	2020-01-11	2.7	2.77	2.70	2.7	0.008	0.81	0.0	0.05	15.59	0.01	2.024	4.13	5.99	3.6	96.3	0.1	-3.41	0.73	0.86	4.01	2.7	0.005	0.62	0.0	0.04	17.32	0.00	1.858	8.20	3.36	3.2	96.8	0.0	-0.59	0.97	0.74	0.88	3.64	18627	2183	12	43	6	134	0	logfile
✔	6T0S	10358	2022-07-04	2019-10-03	3.04	3.11	3.10	3.1	0.003	0.60	0.0	0.04	13.17	0.01	2.109	4.41	4.69	2.8	97.2	0.0	-3.21	0.68	0.86	3.59	3.1	0.003	0.55	0.0	0.04	15.00	0.00	1.894	9.54	0.26	2.4	97.6	0.0	0.48	0.53	0.70	0.88	3.48	14651	1700	6	43	2	0	0	logfile
✔	6VTT	21383	2022-07-04	2020-02-13	3.7	4.22	3.79	4.0	0.004	0.64	3.0	0.05	10.83	0.01	2.214	6.27	0.00	4.6	95.4	0.0	-4.61	0.82	0.82	2.05	4.0	0.005	0.65	0.0	0.05	13.53	0.00	2.182	10.19	0.35	7.8	92.2	0.0	-2.19	0.49	0.83	0.83	1.83	16607	1928	36	0	103	0	0	logfile
✔	6T0U	10359	2022-07-04	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.68	0.0	0.05	14.30	0.01	2.273	3.99	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.004	0.57	0.0	0.04	15.79	0.00	2.124	8.09	0.13	3.6	96.4	0.0	0.31	0.59	0.69	0.88	3.02	14176	1695	4	23	0	0	0	logfile
✔	6SZU	10354	2022-07-04	2019-10-02	2.41	2.49	2.44	2.5	0.008	0.82	0.0	0.05	15.38	0.01	2.013	3.08	5.28	4.2	95.7	0.1	-2.10	0.71	0.88	5.00	2.5	0.003	0.57	0.0	0.04	16.91	0.00	1.877	6.19	1.85	2.3	97.7	0.0	0.57	0.50	0.73	0.90	4.64	15245	1699	14	54	8	311	0	logfile
✔	6SK0	10219	2022-07-03	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile

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