Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y5T	33624	2023-04-21	2022-06-17	2.9	2.28	2.95	3.0	0.007	1.02	0.0	0.19	10.45	0.01	2.265	3.95	0.18	5.1	94.9	0.0	-3.37	0.64	0.84	4.18	3.0	0.003	0.72	0.0	0.06	15.01	0.00	2.188	6.34	2.22	4.5	95.5	0.0	0.74	2.26	0.66	0.86	3.06	10844	1314	13	0	27	0	0	logfile
✔	8HiK	34819	2023-04-20	2022-11-20	3.72	2.46	3.76	3.2	0.005	0.82	0.0	0.05	9.44	0.01	2.282	4.81	0.00	5.3	94.7	0.0	-3.54	0.66	0.63	1.53	2.2	0.005	0.78	0.0	0.04	14.64	0.00	2.107	18.03	0.56	7.5	92.5	0.0	-1.02	0.81	0.69	0.67	1.60	8238	1055	5	0	1	0	0	logfile
✔	8EFo	28086	2023-04-22	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	8.02	0.01	2.241	5.81	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	2.9	0.002	0.60	0.0	0.04	15.13	0.00	2.153	10.65	2.30	1.8	98.2	0.0	1.38	2.46	0.59	0.81	2.77	11708	1441	9	0	12	0	0	logfile
✔	8DTi	27699	2023-04-21	2022-07-25	3.8	3.87	—	3.8	0.006	0.66	0.0	0.04	13.31	0.00	2.196	4.70	0.00	2.9	97.1	0.0	1.82	0.81	0.76	2.21	3.8	0.002	0.55	0.0	0.04	15.22	0.00	2.204	8.20	0.43	2.3	97.7	0.0	1.89	0.40	0.82	0.79	2.07	9455	1258	4	0	2	0	0	logfile
✔	7WoP	32654	2023-04-20	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.005	0.85	0.0	0.05	14.87	0.01	2.063	24.57	0.72	18.5	81.5	0.0	-3.82	1.29	0.65	0.69	2.10	5107	669	3	0	0	0	0	logfile
✔	6MAR	9062	2023-04-25	2018-08-28	4.5	4.66	4.48	4.4	0.007	1.04	0.0	0.07	9.48	0.01	2.031	7.46	0.26	9.8	90.0	0.2	-3.41	0.78	0.81	—	4.4	0.005	0.79	0.0	0.05	11.55	0.00	2.113	16.62	0.00	10.6	89.4	0.0	-2.02	1.38	0.78	0.82	—	19211	2225	47	0	130	0	0	logfile
✔	7SHK	25127	2023-04-21	2021-10-09	3.1	3.83	—	3.7	0.005	0.82	4.0	0.05	14.18	0.01	2.199	12.41	0.25	4.0	96.0	0.0	-0.23	0.82	0.76	1.56	3.6	0.003	0.72	0.0	0.04	15.87	0.00	2.202	12.22	0.08	3.0	97.0	0.0	0.24	1.01	0.82	0.77	1.30	10485	1299	7	0	4	0	0	logfile
✔	7Z4J	14499	2023-04-23	2022-03-03	2.99	3.74	3.13	3.4	0.005	0.48	0.0	0.04	13.43	0.00	1.860	7.21	2.15	2.2	97.8	0.0	0.96	0.85	0.87	2.76	3.4	0.003	0.46	0.0	0.03	14.74	0.00	1.890	7.32	1.32	2.6	97.4	0.0	1.42	0.49	0.85	0.86	2.67	13948	1345	10	142	4	8	0	logfile
✔	7TGW	25887	2023-04-27	2022-01-09	3.0	3.69	—	3.4	0.007	0.86	0.0	0.10	13.01	0.01	1.983	10.37	0.24	7.3	92.6	0.0	-2.46	0.86	0.88	3.64	3.4	0.003	0.68	0.0	0.05	14.39	0.00	2.121	6.29	0.79	5.4	94.6	0.0	-0.74	0.50	0.86	0.89	2.91	26617	3307	18	0	45	0	0	logfile
✔	7WU9	32824	2023-04-20	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.62	0.0	0.04	15.22	0.00	2.261	8.40	0.43	3.0	97.0	0.0	1.17	0.82	0.68	0.83	2.14	7369	1030	5	0	0	0	0	logfile
✔	7CH1	30368	2023-04-21	2020-07-03	2.6	2.70	—	2.8	0.007	0.87	0.0	0.06	15.52	0.01	2.218	3.39	6.10	4.3	95.6	0.2	-5.35	0.66	0.86	3.92	2.7	0.003	0.59	0.0	0.04	14.61	0.00	2.234	4.04	1.48	3.5	96.5	0.0	1.89	1.63	0.69	0.89	3.15	9948	1280	6	0	6	76	0	logfile
✔	7VD9	31911	2023-04-24	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7Z03	14403	2023-04-24	2022-02-21	3.7	4.81	3.71	4.4	0.004	0.70	0.0	0.04	18.87	0.00	1.498	7.19	0.08	3.2	96.8	0.0	0.79	0.77	0.64	1.19	4.4	0.004	0.93	0.0	0.05	20.53	0.00	1.913	20.70	0.31	4.3	95.7	0.0	-0.14	1.11	0.82	0.81	0.78	13396	1497	10	78	8	0	0	logfile
✔	7V2Q	31660	2023-04-19	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	15.54	0.00	2.189	6.75	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.006	0.70	0.0	0.04	16.49	0.01	2.111	10.94	0.62	6.6	93.3	0.0	-0.43	1.48	0.82	0.88	2.05	52904	2875	25	1391	2	0	0	logfile
✔	6CS1	7579	2023-04-27	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	8.77	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.007	1.10	1.0	0.06	11.78	0.01	1.900	35.89	0.00	11.7	88.3	0.0	-3.21	1.93	0.71	0.58	—	25995	3202	27	0	75	0	0	logfile
✔	7VX1	32167	2023-04-27	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	2.1	0.003	0.65	0.0	0.04	13.20	0.00	2.098	11.64	0.11	3.0	96.9	0.0	-0.65	1.38	0.66	0.64	1.34	25362	3237	3	0	0	0	0	logfile
✔	6K9Q	9952	2023-04-28	2019-06-17	3.1	3.28	—	3.5	0.007	1.09	4.0	0.06	11.35	0.01	1.554	9.55	0.29	6.3	93.6	0.1	-3.33	0.51	0.77	2.45	3.5	0.004	0.70	0.0	0.04	14.47	0.00	2.064	17.13	0.59	5.5	94.5	0.0	-1.18	0.57	0.51	0.80	1.98	76902	10451	26	0	0	0	0	logfile
✔	7WZ1	32901	2023-04-27	2022-02-16	3.4	2.58	—	2.2	0.003	0.66	0.0	0.04	9.42	0.00	2.212	7.59	5.40	7.6	92.4	0.0	-4.14	0.74	0.73	2.32	3.2	0.003	0.73	0.0	0.05	14.50	0.00	2.065	11.73	0.94	9.0	91.0	0.0	-1.91	1.35	0.76	0.77	2.16	24467	3092	6	0	28	0	0	logfile
✔	7UX2	26846	2023-04-20	2022-05-04	2.9	3.04	—	3.0	0.003	0.64	0.0	0.04	14.24	0.00	1.999	4.45	0.00	5.1	94.9	0.0	0.24	0.74	0.78	3.35	3.0	0.003	0.56	0.0	0.04	16.42	0.00	1.862	7.84	0.73	4.8	95.2	0.0	0.30	0.48	0.74	0.82	3.07	54396	3421	20	2	4	0	27147	logfile
✔	6VRW	21372	2023-04-23	2020-02-10	3.71	4.25	3.76	4.0	0.007	0.93	0.0	0.07	13.94	0.00	2.301	4.29	0.40	7.8	92.2	0.0	-4.95	0.81	0.81	2.33	4.0	0.003	0.66	0.0	0.05	15.29	0.00	2.173	8.27	0.13	6.7	93.3	0.0	-2.19	0.43	0.82	0.82	2.45	14568	1671	36	0	96	0	0	logfile

• ← previous
• Page 5 of 372
• next →