Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RAY	4787	2022-12-20	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.83	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	4.3	0.003	0.82	0.0	0.04	15.26	0.00	2.087	16.75	0.07	11.9	88.0	0.0	-3.33	1.15	0.61	0.59	—	39071	4887	18	13	6	0	0	logfile
✔	6RQL	4984	2022-12-22	2019-05-16	2.9	2.93	—	3.0	0.009	1.09	1.0	0.06	12.93	0.01	1.977	6.69	0.74	8.3	91.7	0.0	-4.74	0.60	0.67	2.47	2.9	0.003	0.65	0.0	0.04	17.08	0.00	2.121	10.07	3.10	5.8	94.2	0.0	-0.68	1.62	0.70	0.75	2.02	51626	6246	20	84	0	0	0	logfile
✔	6KXS	0782	2022-12-14	2019-09-12	3.4	3.50	—	3.4	0.018	1.44	0.0	0.09	15.88	0.01	2.157	9.02	3.30	15.2	84.4	0.4	-4.73	0.70	0.72	2.54	3.4	0.003	0.69	0.0	0.05	16.61	0.00	2.148	11.56	0.51	8.8	91.2	0.0	-2.11	0.56	0.71	0.75	2.08	22499	2869	23	0	12	0	0	logfile
✔	6U2K	20621	2022-12-11	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.70	0.0	0.04	15.05	0.00	2.275	6.57	2.12	8.2	91.8	0.0	-2.00	1.20	0.65	0.81	2.97	4719	604	3	0	4	0	0	logfile
✔	6SB3	10134	2022-12-15	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.7	0.005	0.71	0.0	0.05	16.11	0.01	2.025	19.45	0.76	8.0	92.0	0.0	-1.75	1.63	0.71	0.77	0.99	75712	9664	32	0	32	0	0	logfile
✔	6EZM	4160	2022-12-20	2017-11-15	3.2	3.09	—	3.1	0.010	1.28	0.0	0.06	10.27	0.01	1.913	8.89	0.10	10.0	90.0	0.0	-4.97	0.79	0.82	4.74	3.1	0.004	0.69	0.0	0.05	15.82	0.01	2.051	10.65	0.23	8.3	91.7	0.0	-1.00	1.99	0.81	0.86	3.43	38400	5088	38	0	72	0	0	logfile
✔	6SKY	10231	2022-12-14	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.52	0.0	0.04	16.48	0.00	2.102	5.19	2.81	2.1	97.9	0.0	1.58	2.20	0.73	0.85	2.38	22348	2824	4	0	4	0	0	logfile
✔	6RAX	4786	2022-12-20	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.26	0.00	2.110	14.46	0.56	10.5	89.5	0.0	-2.93	1.49	0.56	0.54	0.32	40970	5062	19	29	6	0	0	logfile
✔	6MPH	9189	2022-12-16	2018-10-06	3.8	4.28	—	3.9	0.006	0.79	0.0	0.05	12.56	0.01	2.286	6.16	6.01	5.3	94.6	0.2	-3.46	0.84	0.85	2.34	3.9	0.003	0.70	0.0	0.04	14.24	0.00	2.068	13.92	0.33	5.2	94.8	0.0	-1.06	0.76	0.84	0.85	2.02	32092	3843	72	0	155	0	0	logfile
✔	6iZR	9757	2022-12-16	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.64	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.004	0.86	0.0	0.05	12.98	0.00	2.077	22.21	0.00	6.6	93.4	0.0	-0.51	2.07	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✔	6RAW	4785	2022-12-20	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.64	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.004	0.84	0.0	0.05	18.41	0.01	2.107	15.65	0.77	12.1	87.9	0.0	-3.08	3.97	0.58	0.62	0.54	39710	4877	18	39	6	0	0	logfile
✔	6D6Q	7808	2022-12-16	2018-04-22	3.45	3.57	—	3.5	0.006	0.74	0.0	0.05	10.12	0.00	1.778	9.91	0.06	9.9	90.1	0.0	-4.46	0.79	0.77	2.28	3.5	0.003	0.67	0.0	0.04	15.12	0.00	2.129	10.56	0.24	4.3	95.7	0.0	-0.46	0.88	0.82	0.83	1.58	31639	3889	17	61	3	0	0	logfile
✔	6XWQ	10635	2022-12-12	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.78	0.0	0.04	15.52	0.00	2.168	13.94	0.20	4.0	96.0	0.0	1.04	1.17	0.72	0.84	0.66	9572	1281	6	0	0	0	0	logfile
✔	6KLB	0705	2022-12-14	2019-07-30	4.1	4.14	—	4.0	0.004	0.90	1.0	0.05	11.32	0.01	2.015	8.05	0.31	9.0	90.8	0.2	-5.01	0.66	0.55	—	4.0	0.003	0.73	0.0	0.04	13.30	0.00	1.885	15.29	0.00	9.8	90.2	0.0	-1.69	2.90	0.68	0.59	—	21384	2467	11	50	4	11	0	logfile
✔	6QXM	4669	2022-12-19	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	2.5	0.003	0.69	0.0	0.04	15.70	0.00	2.096	11.00	0.10	5.4	94.6	0.0	-1.31	1.63	0.66	0.65	—	37164	4704	12	0	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6TNY	10539	2022-12-14	2019-12-10	3.08	3.41	—	3.1	0.009	1.10	2.0	0.06	17.58	0.01	1.826	8.80	0.83	6.4	93.2	0.3	-3.49	0.83	0.76	2.04	3.1	0.004	0.71	0.0	0.04	18.11	0.00	2.126	9.52	0.39	6.0	94.0	0.0	-0.66	0.75	0.86	0.82	1.94	19726	2399	10	50	3	0	0	logfile
✔	6GEJ	4395	2022-12-21	2018-04-26	3.6	3.77	—	3.7	0.003	0.62	0.0	0.04	18.57	0.00	1.491	9.17	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.68	0.0	0.04	20.51	0.00	0.867	10.76	0.38	4.4	95.6	0.0	-0.05	0.83	0.83	0.80	0.97	43702	4683	29	308	151	0	0	logfile
✔	6ME0	9105	2022-12-14	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.75	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.005	0.67	0.0	0.03	17.39	0.00	1.842	19.43	0.28	13.2	86.8	0.0	-2.26	1.22	0.89	0.82	2.07	21539	414	4	845	33	0	0	logfile
✔	6o84	0650	2022-12-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.003	0.74	0.0	0.04	16.21	0.00	2.150	8.65	0.64	5.2	94.8	0.0	1.37	1.29	0.60	0.82	2.24	6224	712	2	0	118	0	0	logfile

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