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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7U9o | 26402 | 2023-07-04 | 2022-03-11 | 3.4 | 3.12 | 3.37 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 9.99 | 0.01 | 2.330 | 1.94 | 0.28 | 9.5 | 90.3 | 0.1 | -4.13 | 0.71 | 0.84 | 4.52 | 3.4 | 0.002 | 0.62 | 0.0 | 0.04 | 14.33 | 0.01 | 2.099 | 5.43 | 0.41 | 5.6 | 94.4 | 0.0 | -1.66 | 1.13 | 0.69 | 0.85 | 3.36 | 6563 | 829 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6T8B | 10399 | 2023-07-09 | 2019-10-24 | 3.65 | 3.73 | — | 3.7 | 0.004 | 0.72 | 0.0 | 0.05 | 12.10 | 0.01 | 1.942 | 14.10 | 0.00 | 7.2 | 92.8 | 0.0 | -4.40 | 0.76 | 0.83 | 2.47 | 3.7 | 0.004 | 0.71 | 0.0 | 0.05 | 16.55 | 0.00 | 1.868 | 13.84 | 0.40 | 6.0 | 94.0 | 0.0 | -1.41 | 0.71 | 0.79 | 0.84 | 1.76 | 19077 | 2370 | 14 | 40 | 10 | 0 | 0 | logfile |
✔ | 6Z16 | 11027 | 2023-07-14 | 2020-05-12 | 2.98 | 2.98 | — | 3.1 | 0.008 | 1.13 | 0.0 | 0.06 | 12.51 | 0.01 | 2.238 | 3.49 | 0.10 | 4.5 | 95.5 | 0.0 | -2.64 | 0.73 | 0.83 | 3.55 | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 15.59 | 0.00 | 2.056 | 11.04 | 1.91 | 4.2 | 95.8 | 0.0 | 1.13 | 1.31 | 0.74 | 0.83 | 2.71 | 30250 | 3744 | 24 | 0 | 30 | 0 | 0 | logfile |
✔ | 6CMo | 7517 | 2023-07-06 | 2018-03-05 | 4.5 | 4.24 | — | 4.2 | 0.004 | 1.00 | 0.0 | 0.06 | 10.43 | 0.01 | 2.181 | 3.92 | 0.08 | 1.3 | 98.7 | 0.0 | -1.97 | 0.59 | 0.68 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 12.67 | 0.00 | 2.170 | 10.28 | 0.16 | 3.4 | 96.6 | 0.0 | -0.65 | 0.80 | 0.59 | 0.67 | — | 11834 | 1516 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7NSB | 12563 | 2023-07-07 | 2021-03-05 | 3.7 | 3.60 | 3.62 | 3.7 | 0.004 | 0.70 | 0.0 | 0.05 | 13.75 | 0.00 | 2.214 | 8.33 | 0.00 | 11.5 | 88.5 | 0.0 | -2.03 | 0.73 | 0.82 | 2.57 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 15.38 | 0.00 | 2.139 | 7.84 | 0.37 | 10.4 | 89.6 | 0.0 | -1.04 | 0.31 | 0.73 | 0.82 | 1.63 | 13474 | 1775 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KY7 | 23070 | 2023-07-05 | 2020-12-07 | 3.08 | 3.38 | — | 3.3 | 0.004 | 0.70 | 0.0 | 0.05 | 15.08 | 0.00 | 1.705 | 14.99 | 1.01 | 7.0 | 92.9 | 0.1 | -3.55 | 0.70 | 0.81 | 2.28 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 16.27 | 0.00 | 1.972 | 10.92 | 0.46 | 6.4 | 93.6 | 0.0 | -1.19 | 1.10 | 0.68 | 0.82 | 2.41 | 10294 | 1247 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 8H77 | 34519 | 2023-07-08 | 2022-10-19 | 3.2 | 2.74 | 3.17 | 3.1 | 0.005 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 1.365 | 13.60 | 0.12 | 5.1 | 94.9 | 0.0 | -1.57 | 0.59 | 0.67 | 2.51 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 17.53 | 0.00 | 0.978 | 10.16 | 0.29 | 4.2 | 95.8 | 0.0 | -0.93 | 0.69 | 0.69 | 0.77 | 2.13 | 15726 | 1930 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZGi | 11207 | 2023-07-12 | 2020-06-18 | 2.9 | 3.12 | 3.02 | 3.1 | 0.007 | 0.80 | 0.0 | 0.05 | 12.59 | 0.00 | 2.317 | 1.64 | 0.73 | 4.2 | 95.7 | 0.1 | -0.93 | 0.75 | 0.83 | 4.10 | 3.1 | 0.003 | 0.61 | 0.0 | 0.05 | 14.88 | 0.00 | 2.134 | 2.68 | 1.25 | 4.4 | 95.6 | 0.0 | -0.48 | 1.19 | 0.75 | 0.85 | 3.95 | 26901 | 3294 | 33 | 0 | 78 | 0 | 0 | logfile |
✔ | 7JZH | 22531 | 2023-07-09 | 2020-09-02 | 3.59 | 3.46 | — | 3.5 | 0.006 | 0.96 | 4.0 | 0.06 | 20.56 | 0.01 | 2.095 | 16.68 | 16.34 | 8.7 | 91.3 | 0.0 | -3.42 | 0.56 | 0.73 | 1.23 | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 19.32 | 0.00 | 2.126 | 10.99 | 0.94 | 5.6 | 94.4 | 0.0 | -0.44 | 1.64 | 0.60 | 0.74 | 1.27 | 20328 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EG0 | 28108 | 2023-07-04 | 2022-09-10 | 3.53 | 4.58 | 3.65 | 4.0 | 0.002 | 0.49 | 0.0 | 0.04 | 11.73 | 0.00 | 2.269 | 7.87 | 0.00 | 0.5 | 99.5 | 0.0 | 1.82 | 0.89 | 0.83 | 1.71 | 4.1 | 0.004 | 0.55 | 0.0 | 0.04 | 13.47 | 0.00 | 2.195 | 11.32 | 0.00 | 2.3 | 97.7 | 0.0 | 1.60 | 0.57 | 0.90 | 0.85 | 1.98 | 6031 | 584 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 5ZX5 | 6975 | 2023-07-12 | 2018-05-18 | 3.28 | 3.43 | — | 3.4 | 0.016 | 1.41 | 0.0 | 0.08 | 11.53 | 0.01 | 2.270 | 11.04 | 2.12 | 4.0 | 95.8 | 0.2 | -4.97 | 0.69 | 0.81 | 3.74 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 15.79 | 0.00 | 2.240 | 7.52 | 0.20 | 4.0 | 96.0 | 0.0 | 0.38 | 0.69 | 0.71 | 0.84 | 2.04 | 25440 | 3256 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7YPB | 33998 | 2023-07-12 | 2022-08-03 | 3.48 | 3.51 | 3.48 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.92 | 0.00 | 2.184 | 2.96 | 0.04 | 2.8 | 97.2 | 0.0 | -4.01 | 0.71 | 0.72 | 1.57 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.63 | 0.00 | 1.982 | 8.35 | 0.34 | 3.4 | 96.6 | 0.0 | -0.49 | 1.29 | 0.77 | 0.83 | 1.80 | 25626 | 3133 | 10 | 55 | 3 | 0 | 0 | logfile |
✔ | 7ZH2 | 14718 | 2023-07-11 | 2022-04-05 | 2.71 | 2.24 | 2.66 | 2.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.21 | 0.00 | 2.038 | 2.41 | 0.30 | 3.3 | 96.6 | 0.1 | -0.81 | 0.73 | 0.81 | 3.90 | 2.5 | 0.003 | 0.61 | 0.0 | 0.05 | 15.62 | 0.00 | 2.217 | 3.10 | 1.74 | 4.6 | 95.4 | 0.0 | -0.72 | 0.39 | 0.74 | 0.83 | 4.04 | 24419 | 3060 | 9 | 0 | 36 | 0 | 0 | logfile |
✔ | 7NV0 | 12601 | 2023-07-05 | 2021-03-15 | 3.4 | 2.96 | — | 2.9 | 0.011 | 1.13 | 0.0 | 0.06 | 19.63 | 0.01 | 2.205 | 8.09 | 1.30 | 8.1 | 91.9 | 0.0 | -4.56 | 0.60 | 0.68 | 2.36 | 2.9 | 0.003 | 0.68 | 0.0 | 0.04 | 20.46 | 0.00 | 1.491 | 12.21 | 0.54 | 2.2 | 97.8 | 0.0 | -0.94 | 0.71 | 0.58 | 0.69 | 1.64 | 9928 | 1180 | 7 | 53 | 1 | 0 | 0 | logfile |
✔ | 7TMP | 25998 | 2023-07-15 | 2022-01-19 | 3.3 | 3.47 | — | 3.4 | 0.004 | 0.54 | 0.0 | 0.04 | 12.38 | 0.00 | 1.989 | 8.91 | 0.38 | 3.5 | 96.5 | 0.1 | 1.23 | 0.78 | 0.84 | 3.41 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 14.07 | 0.00 | 1.940 | 8.56 | 0.29 | 2.9 | 97.1 | 0.0 | 1.21 | 0.28 | 0.79 | 0.86 | 2.88 | 32105 | 4805 | 16 | 0 | 2 | 0 | 0 | logfile |
✔ | 7R15 | 14231 | 2023-07-11 | 2022-02-02 | 4.1 | 4.52 | 4.27 | 4.3 | 0.004 | 0.57 | 0.0 | 0.05 | 13.87 | 0.00 | 2.099 | 11.10 | 0.00 | 6.2 | 93.8 | 0.0 | -0.90 | 0.86 | 0.84 | — | 4.3 | 0.003 | 0.57 | 0.0 | 0.04 | 14.11 | 0.00 | 2.136 | 11.06 | 0.04 | 5.1 | 94.9 | 0.0 | -0.86 | 0.36 | 0.85 | 0.83 | — | 24100 | 3000 | 9 | 0 | 43 | 0 | 0 | logfile |
✔ | 6LZ1 | 30021 | 2023-07-16 | 2020-02-17 | 3.2 | 3.36 | 3.57 | 3.3 | 0.005 | 0.61 | 0.0 | 0.05 | 15.47 | 0.00 | 2.099 | 11.03 | 2.52 | 7.7 | 92.3 | 0.0 | -3.40 | 0.87 | 0.86 | 3.56 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 16.25 | 0.00 | 2.061 | 10.26 | 0.42 | 6.5 | 93.5 | 0.0 | -1.37 | 0.36 | 0.86 | 0.87 | 3.47 | 34492 | 4304 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7WB1 | 32392 | 2023-07-06 | 2021-12-15 | 3.7 | 3.09 | — | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 19.51 | 0.00 | 2.046 | 11.12 | 0.00 | 4.7 | 95.2 | 0.1 | 0.55 | 0.83 | 0.75 | 0.94 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 20.37 | 0.00 | 2.084 | 14.67 | 0.00 | 5.2 | 94.8 | 0.0 | 0.33 | 1.01 | 0.83 | 0.76 | 1.29 | 11524 | 960 | 4 | 178 | 0 | 0 | 0 | logfile |
✔ | 6YKM | 10828 | 2023-07-05 | 2020-04-06 | 3.1 | 3.19 | 2.97 | 3.2 | 0.009 | 1.07 | 0.0 | 0.06 | 11.10 | 0.01 | 2.256 | 4.12 | 0.00 | 3.0 | 97.0 | 0.0 | -4.68 | 0.68 | 0.86 | 4.14 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.163 | 9.05 | 0.00 | 2.7 | 97.3 | 0.0 | 0.97 | 1.08 | 0.69 | 0.88 | 2.54 | 10434 | 1357 | 10 | 0 | 0 | 8 | 0 | logfile |
✔ | 7oD3 | 12818 | 2023-07-11 | 2021-04-28 | 2.8 | 2.59 | 3.00 | 2.7 | 0.004 | 0.61 | 0.0 | 0.05 | 14.00 | 0.00 | 1.953 | 2.55 | 0.23 | 4.8 | 95.2 | 0.0 | -1.05 | 0.73 | 0.81 | 3.95 | 2.7 | 0.007 | 0.78 | 0.0 | 0.05 | 16.38 | 0.01 | 2.113 | 3.07 | 2.32 | 5.5 | 94.5 | 0.0 | -0.87 | 0.30 | 0.75 | 0.85 | 3.90 | 24222 | 3036 | 6 | 0 | 36 | 0 | 0 | logfile |