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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8BHT | 16069 | 2024-03-14 | 2022-10-31 | 3.1 | 3.68 | 3.10 | 3.5 | 0.008 | 0.78 | 0.0 | 0.05 | 12.87 | 0.00 | 2.260 | 4.18 | 0.41 | 2.3 | 97.5 | 0.2 | 0.30 | 0.69 | 0.81 | 3.27 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.72 | 0.00 | 2.186 | 5.72 | 1.96 | 3.5 | 96.5 | 0.0 | 1.14 | 0.95 | 0.65 | 0.84 | 2.44 | 9016 | 1138 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7A09 | 11602 | 2024-03-14 | 2020-08-07 | 3.5 | 3.37 | — | 3.0 | 0.010 | 1.21 | 1.0 | 0.06 | 21.00 | 0.01 | 1.928 | 8.55 | 0.02 | 9.0 | 91.0 | 0.1 | -3.04 | 0.71 | 0.73 | 1.67 | 2.9 | 0.005 | 0.73 | 0.0 | 0.04 | 21.17 | 0.00 | 1.910 | 15.14 | 2.51 | 7.8 | 92.2 | 0.0 | -1.18 | 0.63 | 0.76 | 0.80 | 1.43 | 122168 | 10946 | 61 | 1796 | 20 | 0 | 0 | logfile |
✔ | 7VCF | 31890 | 2024-03-24 | 2021-09-02 | 2.5 | 2.41 | 2.38 | 2.3 | 0.007 | 1.08 | 2.0 | 0.13 | 15.16 | 0.01 | 2.057 | 3.71 | 0.19 | 5.5 | 94.3 | 0.2 | -1.21 | 0.79 | 0.81 | 3.52 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 16.37 | 0.00 | 1.954 | 5.97 | 1.57 | 4.5 | 95.5 | 0.0 | 0.75 | 0.42 | 0.80 | 0.84 | 2.94 | 39626 | 4841 | 20 | 0 | 7 | 2 | 0 | logfile |
✔ | 7Q5R | 13845 | 2024-03-19 | 2021-11-04 | 3.84 | 4.21 | 3.98 | 4.1 | 0.006 | 0.93 | 0.0 | 0.07 | 10.54 | 0.00 | 2.365 | 4.40 | 0.57 | 1.9 | 98.1 | 0.0 | 0.17 | 0.71 | 0.58 | 0.16 | 4.1 | 0.004 | 0.81 | 2.0 | 0.05 | 14.95 | 0.01 | 1.776 | 15.55 | 2.77 | 1.5 | 98.5 | 0.0 | 1.20 | 3.75 | 0.81 | 0.85 | 1.45 | 95520 | 12600 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BC4 | 12138 | 2024-03-20 | 2020-12-18 | 3.1 | 2.99 | 2.99 | 3.0 | 0.008 | 0.88 | 1.0 | 0.06 | 15.49 | 0.01 | 2.285 | 5.33 | 1.19 | 6.4 | 93.6 | 0.0 | -5.07 | 0.51 | 0.85 | 3.25 | 3.0 | 0.002 | 0.57 | 0.0 | 0.04 | 15.98 | 0.00 | 2.180 | 8.65 | 2.25 | 4.6 | 95.4 | 0.0 | -0.88 | 1.18 | 0.52 | 0.87 | 2.77 | 27610 | 3514 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7LSS | 23507 | 2024-03-18 | 2021-02-18 | 3.72 | 4.30 | 3.76 | 4.0 | 0.011 | 1.11 | 2.0 | 0.06 | 12.45 | 0.01 | 1.993 | 1.15 | 0.00 | 4.9 | 95.1 | 0.0 | -0.63 | 0.76 | 0.78 | 3.19 | 4.0 | 0.005 | 0.66 | 0.0 | 0.05 | 13.01 | 0.00 | 2.153 | 6.71 | 1.33 | 4.4 | 95.6 | 0.0 | 0.42 | 1.56 | 0.78 | 0.83 | 2.27 | 20582 | 2783 | 14 | 0 | 42 | 0 | 0 | logfile |
✔ | 7L2D | 23125 | 2024-03-20 | 2020-12-16 | 3.55 | 3.93 | 3.79 | 3.9 | 0.006 | 1.03 | 5.0 | 0.08 | 13.26 | 0.02 | 2.252 | 4.75 | 0.33 | 2.9 | 97.1 | 0.0 | -0.67 | 0.74 | 0.81 | 2.43 | 3.8 | 0.004 | 0.77 | 1.0 | 0.05 | 13.50 | 0.00 | 2.004 | 9.63 | 1.35 | 2.7 | 97.3 | 0.0 | -0.01 | 0.55 | 0.76 | 0.83 | 2.46 | 28328 | 3492 | 28 | 0 | 77 | 0 | 0 | logfile |
✔ | 7BVF | 30218 | 2024-03-17 | 2020-04-10 | 2.97 | 3.41 | 3.02 | 3.3 | 0.007 | 1.25 | 6.0 | 0.06 | 14.11 | 0.01 | 1.409 | 6.43 | 0.12 | 12.7 | 87.1 | 0.2 | -4.65 | 0.75 | 0.88 | 3.54 | 3.3 | 0.003 | 0.91 | 0.0 | 0.04 | 15.17 | 0.01 | 2.186 | 6.43 | 1.61 | 10.4 | 89.6 | 0.0 | -2.10 | 0.91 | 0.73 | 0.89 | 2.79 | 16933 | 2221 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7LHT | 23350 | 2024-03-20 | 2021-01-26 | 3.5 | 3.81 | — | 3.6 | 0.005 | 0.81 | 2.0 | 0.05 | 14.56 | 0.00 | 2.121 | 12.08 | 0.06 | 12.2 | 87.8 | 0.0 | -5.40 | 0.69 | 0.63 | 2.12 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 15.98 | 0.00 | 2.109 | 10.78 | 2.66 | 9.3 | 90.7 | 0.0 | -2.42 | 0.76 | 0.79 | 0.78 | 1.77 | 28245 | 3590 | 4 | 2 | 2 | 0 | 0 | logfile |
✔ | 6DRV | 8908 | 2024-03-22 | 2018-06-13 | 2.2 | 2.30 | 2.26 | 2.3 | 0.017 | 1.44 | 0.0 | 0.08 | 12.56 | 0.02 | 2.116 | 3.99 | 0.23 | 6.8 | 91.1 | 2.1 | -1.87 | 0.59 | 0.79 | 5.89 | 2.3 | 0.004 | 0.70 | 0.0 | 0.05 | 15.95 | 0.00 | 2.070 | 6.15 | 1.23 | 2.8 | 97.2 | 0.0 | 0.31 | 1.45 | 0.74 | 0.89 | 5.92 | 32888 | 4096 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V83 | 31788 | 2024-03-24 | 2021-08-22 | 2.8 | 3.28 | — | 3.2 | 0.005 | 0.63 | 0.0 | 0.05 | 14.99 | 0.00 | 2.147 | 10.09 | 0.00 | 5.7 | 94.3 | 0.0 | -0.33 | 0.76 | 0.79 | 1.90 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 15.40 | 0.00 | 2.131 | 8.66 | 1.33 | 5.0 | 95.0 | 0.0 | -0.08 | 0.36 | 0.75 | 0.78 | 1.71 | 40162 | 4902 | 40 | 0 | 89 | 0 | 0 | logfile |
✔ | 7Y1T | 33572 | 2024-03-11 | 2022-06-08 | 3.24 | 3.67 | 3.31 | 3.5 | 0.003 | 0.59 | 0.0 | 0.09 | 16.88 | 0.00 | 1.998 | 8.09 | 0.00 | 4.1 | 95.9 | 0.0 | -0.76 | 0.73 | 0.75 | 1.76 | 3.5 | 0.004 | 0.68 | 0.0 | 0.05 | 15.47 | 0.00 | 2.093 | 11.06 | 2.68 | 5.5 | 94.5 | 0.0 | -0.74 | 0.59 | 0.74 | 0.79 | 2.53 | 8112 | 1030 | 10 | 0 | 24 | 0 | 0 | logfile |
✔ | 7UQJ | 26696 | 2024-03-20 | 2022-04-19 | 3.0 | 2.25 | 2.93 | 3.0 | 0.010 | 1.08 | 5.0 | 0.06 | 17.03 | 0.01 | 2.001 | 9.76 | 1.08 | 5.2 | 94.7 | 0.1 | -3.16 | 0.71 | 0.63 | 0.77 | 2.0 | 0.004 | 0.69 | 0.0 | 0.04 | 19.12 | 0.00 | 1.907 | 9.99 | 2.61 | 4.2 | 95.8 | 0.0 | 0.31 | 1.86 | 0.79 | 0.82 | 2.14 | 27983 | 3495 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T3P | 25667 | 2024-03-14 | 2021-12-08 | 3.2 | 3.52 | 3.32 | 3.5 | 0.004 | 0.54 | 0.0 | 0.04 | 14.83 | 0.00 | 2.019 | 8.33 | 0.00 | 4.1 | 95.9 | 0.0 | 1.75 | 0.67 | 0.70 | 2.04 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.22 | 0.00 | 2.116 | 10.99 | 2.02 | 3.2 | 96.8 | 0.0 | 1.30 | 1.82 | 0.70 | 0.77 | 2.07 | 66992 | 8188 | 8 | 0 | 88 | 0 | 0 | logfile |
✔ | 7YM8 | 33924 | 2024-03-10 | 2022-07-27 | 2.92 | 3.14 | 2.90 | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 16.01 | 0.01 | 2.331 | 4.04 | 0.00 | 4.2 | 95.8 | 0.0 | -3.62 | 0.68 | 0.81 | 3.68 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 16.18 | 0.00 | 2.228 | 6.41 | 1.86 | 3.5 | 96.5 | 0.0 | 0.28 | 0.39 | 0.65 | 0.82 | 3.04 | 4287 | 556 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7NA7 | 24267 | 2024-03-14 | 2021-06-20 | 2.7 | 2.07 | — | 2.0 | 0.006 | 1.04 | 5.0 | 0.22 | 14.70 | 0.01 | 2.178 | 7.05 | 0.61 | 1.6 | 98.4 | 0.0 | 0.32 | 0.76 | 0.75 | 3.53 | 1.9 | 0.004 | 0.79 | 0.0 | 0.06 | 16.89 | 0.00 | 2.149 | 9.38 | 2.55 | 2.3 | 97.7 | 0.0 | 0.50 | 0.98 | 0.81 | 0.82 | 3.64 | 9036 | 1142 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WLZ | 32595 | 2024-03-19 | 2022-01-14 | 2.98 | 3.54 | — | 3.4 | 0.006 | 0.90 | 0.0 | 0.06 | 13.19 | 0.01 | 2.212 | 9.90 | 0.15 | 4.9 | 95.1 | 0.0 | -2.29 | 0.80 | 0.81 | 2.68 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 14.56 | 0.00 | 2.145 | 8.73 | 1.97 | 3.7 | 96.3 | 0.0 | -0.78 | 0.52 | 0.81 | 0.84 | 2.12 | 25061 | 3171 | 8 | 0 | 27 | 0 | 0 | logfile |
✔ | 7SQV | 25396 | 2024-03-10 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 16.22 | 0.00 | 2.300 | 1.47 | 1.25 | 1.1 | 98.9 | 0.0 | 1.75 | 1.99 | 0.77 | 0.90 | 3.89 | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✔ | 8E50 | 27899 | 2024-03-10 | 2022-08-19 | 3.67 | 3.33 | 3.68 | 3.7 | 0.040 | 2.29 | 0.0 | 0.09 | 16.13 | 0.00 | 1.603 | 5.17 | 0.00 | 4.4 | 95.6 | 0.0 | -4.32 | 0.50 | 0.67 | 2.44 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 16.85 | 0.00 | 2.202 | 10.24 | 3.11 | 2.7 | 97.3 | 0.0 | 1.02 | 1.69 | 0.66 | 0.83 | 2.04 | 5277 | 651 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SYL | 25532 | 2024-03-17 | 2021-11-25 | 4.5 | 3.40 | 4.38 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 22.27 | 0.01 | 2.191 | 6.19 | 0.02 | 6.6 | 93.4 | 0.0 | -3.03 | 0.63 | 0.59 | — | 3.3 | 0.005 | 0.81 | 0.0 | 0.04 | 22.53 | 0.01 | 2.044 | 20.42 | 0.02 | 9.8 | 90.1 | 0.0 | -2.22 | 1.08 | 0.66 | 0.64 | — | 78748 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |