Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RDR	4828	2021-04-05	2019-04-12	4.1	4.19	4.13	4.1	0.007	0.94	0.0	0.05	14.97	0.01	1.908	6.95	0.44	5.2	94.6	0.2	-4.22	0.67	0.74	—	4.1	0.003	0.66	0.0	0.04	13.98	0.00	2.020	13.27	0.00	4.4	95.5	0.1	-0.27	1.32	0.69	0.78	—	53748	7103	37	0	11	0	0	logfile
✔	6RDF	4816	2021-04-02	2019-04-12	3.2	3.30	3.22	3.2	0.008	0.89	0.0	0.05	13.40	0.01	2.212	4.09	0.15	4.7	95.2	0.2	-6.00	0.50	0.84	3.59	3.3	0.004	0.65	0.0	0.04	13.63	0.00	2.109	6.98	0.00	3.7	96.2	0.1	0.91	1.20	0.52	0.86	2.75	19855	2597	18	0	1	29	0	logfile
✔	6CB1	7445	2021-04-01	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.93	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.006	0.88	0.0	0.05	19.11	0.00	1.996	27.02	0.00	12.5	87.4	0.0	-2.10	2.58	0.75	0.77	—	69945	6459	42	1615	694	0	0	logfile
✔	6RDi	4819	2021-04-05	2019-04-12	3.2	3.30	3.21	3.2	0.010	1.01	1.0	0.06	14.11	0.01	2.025	5.60	0.34	5.0	94.8	0.2	-3.87	0.68	0.82	2.66	3.3	0.004	0.64	0.0	0.04	13.93	0.00	1.976	9.45	0.00	4.3	95.5	0.2	-0.13	1.61	0.71	0.85	2.61	53748	7103	37	0	11	0	0	logfile
✔	6LB0	0866	2021-04-04	2019-11-13	3.6	3.79	—	3.7	0.006	0.86	0.0	0.05	13.62	0.01	0.919	7.46	0.00	6.5	93.5	0.0	-3.90	0.74	0.89	4.20	3.7	0.004	0.62	0.0	0.04	12.41	0.00	2.072	6.99	0.00	6.4	93.6	0.0	-1.66	0.51	0.74	0.89	4.19	148140	19440	60	0	0	0	0	logfile
✔	6RDA	4811	2021-04-02	2019-04-12	3.04	3.20	2.92	3.1	0.013	1.04	0.0	0.06	13.77	0.01	2.075	3.87	0.58	5.1	94.7	0.3	-5.84	0.57	0.86	3.66	3.1	0.003	0.62	0.0	0.04	13.68	0.00	2.067	7.06	0.00	3.6	96.4	0.0	1.08	1.58	0.58	0.87	3.02	19856	2597	18	0	1	30	0	logfile
✔	6HTX	0271	2021-04-08	2018-10-05	2.66	4.15	2.68	2.5	0.009	0.89	0.0	0.06	9.60	0.01	1.458	17.49	0.00	3.3	96.4	0.3	-2.86	0.80	0.61	0.63	2.5	0.003	0.61	0.0	0.04	11.05	0.00	2.051	8.62	0.00	2.8	96.8	0.3	2.96	1.47	0.99	0.98	4.33	284520	35460	240	0	0	0	0	logfile
✔	6FU8	4319	2021-04-01	2018-02-26	3.2	4.42	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.68	0.0	0.04	13.81	0.00	2.188	8.06	0.00	7.5	91.2	1.2	-0.60	2.54	0.24	0.68	-0.23	1364	82	1	0	0	0	711	logfile
✔	6RDM	4823	2021-04-04	2019-04-12	3.44	3.54	3.79	3.5	0.007	0.94	0.0	0.06	14.22	0.01	2.103	6.98	0.59	4.8	95.0	0.2	-4.38	0.65	0.80	1.94	3.5	0.004	0.69	0.0	0.04	14.02	0.00	1.931	12.93	0.00	4.6	95.3	0.1	-0.68	1.26	0.66	0.82	1.77	33891	4502	25	0	10	0	0	logfile
✔	6RDK	4821	2021-04-05	2019-04-12	3.7	3.64	—	3.7	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.37	0.44	4.9	94.9	0.2	-4.35	0.70	0.82	2.01	3.7	0.003	0.63	0.0	0.04	14.02	0.00	1.982	10.89	0.00	4.1	95.9	0.1	-0.01	1.24	0.69	0.82	1.77	53748	7103	37	0	11	0	0	logfile
✔	6GCS	4384	2021-04-05	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.98	12.04	0.01	2.231	8.76	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.010	1.73	0.0	0.30	12.76	0.01	1.379	22.79	0.00	14.2	85.5	0.3	-2.25	0.81	0.78	0.80	—	55137	6864	53	0	667	0	0	logfile
✔	6REP	4853	2021-04-05	2019-04-12	3.1	3.08	—	3.1	0.011	0.98	0.0	0.06	14.28	0.01	1.436	5.59	0.48	4.7	95.1	0.2	-5.14	0.71	0.84	3.59	3.1	0.003	0.60	0.0	0.04	13.98	0.00	2.029	8.02	0.00	3.4	96.5	0.1	0.53	0.53	0.74	0.86	2.87	53782	7104	43	0	11	26	0	logfile
✔	6RE7	4844	2021-04-04	2019-04-12	3.1	3.19	3.20	3.2	0.011	0.98	0.0	0.06	14.69	0.01	2.164	6.30	0.34	4.5	95.2	0.2	-3.86	0.69	0.84	2.82	3.2	0.003	0.58	0.0	0.04	14.05	0.00	2.006	10.20	0.00	3.1	96.8	0.1	-0.15	0.59	0.67	0.85	2.36	33863	4498	25	0	10	0	0	logfile
✔	6RES	4855	2021-04-05	2019-04-12	4.3	4.30	—	4.2	0.006	0.96	0.0	0.06	15.02	0.01	1.680	8.22	0.41	6.0	93.9	0.1	-5.14	0.64	0.77	—	4.2	0.007	0.84	0.0	0.05	14.53	0.01	1.845	19.03	0.00	6.7	93.1	0.1	-1.03	0.73	0.65	0.79	—	53756	7104	37	0	11	0	0	logfile
✔	6RDS	4829	2021-04-04	2019-04-12	3.8	3.90	3.86	3.8	0.007	0.99	0.0	0.06	15.18	0.01	1.908	7.71	0.51	5.3	94.5	0.2	-4.24	0.65	0.76	1.45	3.8	0.003	0.66	0.0	0.04	14.00	0.00	2.002	13.85	0.00	4.8	95.1	0.1	-0.77	1.28	0.66	0.77	1.19	33891	4502	25	0	10	0	0	logfile
✔	6RDG	4817	2021-04-04	2019-04-12	2.9	2.99	2.90	3.0	0.005	0.83	0.0	0.05	13.99	0.01	1.951	6.35	0.22	3.6	96.2	0.2	-4.83	0.69	0.84	3.54	3.0	0.003	0.60	0.0	0.04	13.17	0.00	1.986	9.22	0.00	3.3	96.6	0.1	-0.11	2.17	0.71	0.86	2.98	33964	4507	31	0	10	34	0	logfile
✔	6RE8	4845	2021-04-05	2019-04-12	3.8	3.75	—	3.8	0.006	0.87	0.0	0.05	14.58	0.01	1.985	5.75	0.21	4.3	95.5	0.2	-4.12	0.67	0.81	1.73	3.8	0.004	0.65	0.0	0.04	14.08	0.00	1.901	10.95	0.00	4.4	95.5	0.1	0.00	0.63	0.67	0.82	1.57	53720	7099	37	0	11	0	0	logfile
✔	6RDE	4815	2021-04-04	2019-04-12	2.9	2.95	2.95	2.9	0.010	1.00	0.0	0.06	14.77	0.01	1.688	6.54	0.39	4.7	95.2	0.2	-4.69	0.71	0.85	3.52	2.9	0.004	0.65	0.0	0.04	13.95	0.00	1.961	10.54	0.00	3.6	96.2	0.1	-0.43	1.58	0.70	0.86	3.30	33926	4502	31	0	10	32	0	logfile
✔	6HJP	0235	2021-04-02	2018-09-04	3.3	3.74	3.29	3.5	0.008	1.17	9.0	0.09	11.49	0.02	2.158	3.91	2.40	7.9	91.9	0.2	-2.34	0.88	0.90	3.43	3.5	0.003	0.61	0.0	0.04	12.01	0.00	2.066	6.14	0.00	5.0	95.0	0.0	0.15	0.64	0.87	0.89	3.13	22134	2784	18	0	51	0	0	logfile
✔	6HJN	0234	2021-04-02	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	11.99	0.02	1.734	5.04	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.004	0.64	0.0	0.04	12.16	0.00	2.092	6.78	0.00	8.0	92.0	0.0	-0.34	0.58	0.90	0.90	3.62	12309	1488	12	0	48	0	0	logfile

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