Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KJX	22901	2021-06-01	2020-10-26	3.1	3.33	—	3.3	0.006	0.66	0.0	0.04	14.07	0.01	2.100	5.38	0.12	2.3	97.7	0.0	0.94	0.71	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.39	0.00	2.071	7.23	0.00	2.3	97.7	0.0	0.71	0.47	0.76	0.85	3.04	8589	948	5	44	2	0	0	logfile
✔	7KL9	22916	2021-06-03	2020-10-29	4.1	4.44	—	4.2	0.008	0.89	2.0	0.05	13.57	0.01	1.240	29.67	0.27	11.8	87.9	0.2	-2.99	0.79	0.81	—	4.2	0.003	0.63	0.0	0.05	13.56	0.00	2.076	14.29	0.00	6.2	93.7	0.1	-1.15	0.70	0.79	0.82	—	26358	3468	11	0	31	0	0	logfile
✔	7M4R	23665	2021-06-02	2021-03-22	3.65	4.49	—	4.2	0.007	0.85	0.0	0.05	14.71	0.01	2.259	8.94	0.00	14.2	85.6	0.2	-2.94	0.74	0.66	1.90	4.2	0.003	0.69	0.0	0.04	15.90	0.00	2.271	7.65	0.00	7.0	93.0	0.0	-1.06	0.66	0.86	0.82	1.52	5092	639	3	0	0	0	0	logfile
✔	7JZM	22533	2021-06-01	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	0.76	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.004	0.64	0.0	0.04	14.71	0.00	2.176	8.12	0.00	4.7	95.3	0.0	0.47	1.25	0.76	0.80	3.70	2033	258	3	0	3	0	0	logfile
✔	7JSE	22451	2021-06-02	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.10	0.0	0.09	14.72	0.00	2.167	9.64	0.00	19.6	80.4	0.0	-2.55	2.76	0.68	0.67	—	13288	3168	24	32	0	0	0	logfile
✔	6VP9	21307	2021-06-01	2020-02-02	3.46	3.63	—	3.6	0.007	0.78	0.0	0.04	15.31	0.01	2.032	21.68	0.00	9.4	90.6	0.0	-3.63	0.77	0.86	1.78	3.6	0.007	1.01	0.0	0.04	16.75	0.00	1.667	9.28	0.00	6.6	93.4	0.0	-0.48	0.45	0.77	0.86	1.17	8610	1077	4	0	1	0	0	logfile
✔	7KS9	23016	2021-06-03	2020-11-21	4.75	5.64	4.96	4.9	0.004	0.77	0.0	0.05	11.71	0.01	2.222	3.55	0.07	1.9	98.1	0.0	-0.64	0.82	0.74	—	4.8	0.002	0.61	0.0	0.04	12.05	0.00	2.121	10.31	0.00	3.2	96.8	0.0	0.05	1.35	0.84	0.80	—	25380	3189	20	0	59	0	0	logfile
✔	7KPX	22991	2021-06-03	2020-11-12	4.4	4.52	4.56	4.3	0.006	1.07	5.0	0.07	16.34	0.01	1.894	6.22	17.46	7.8	91.9	0.4	-1.80	0.79	0.74	—	4.3	0.003	0.71	0.0	0.04	12.78	0.00	2.137	11.20	0.00	9.4	90.4	0.1	-0.03	1.83	0.82	0.81	—	20762	2875	4	0	0	0	0	logfile
✔	7K1K	22625	2021-06-04	2020-09-07	4.1	4.21	—	4.1	0.008	1.12	0.0	0.06	17.45	0.01	2.224	7.18	0.91	14.0	85.5	0.4	-5.07	0.73	0.74	—	4.1	0.003	0.72	0.0	0.04	16.12	0.01	2.086	11.09	0.00	11.8	88.1	0.1	-1.64	1.34	0.72	0.72	—	38243	4620	7	74	0	0	0	logfile
✔	6ZH8	11216	2021-06-03	2020-06-21	4.14	6.50	4.33	4.2	0.005	0.77	0.0	0.04	15.29	0.00	2.198	27.27	0.03	10.6	89.3	0.0	-1.45	0.91	0.85	—	4.2	0.002	0.65	0.0	0.04	15.30	0.00	2.144	14.31	0.00	6.8	93.2	0.0	0.35	1.14	0.90	0.84	—	29506	3668	3	19	26	0	0	logfile
✔	6WMT	21852	2021-06-04	2020-04-21	4.43	5.65	—	3.8	0.013	1.54	4.0	0.11	15.04	0.01	1.825	58.17	5.14	3.3	96.1	0.6	3.17	0.78	0.57	—	3.8	0.005	0.75	0.0	0.04	14.86	0.00	1.948	23.33	0.00	6.1	93.6	0.2	-0.40	2.10	0.88	0.83	—	31931	3741	17	116	152	0	0	logfile
✔	7JLX	22383	2021-06-01	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	6.71	0.00	2.307	8.03	0.00	15.2	84.8	0.0	-1.73	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	7K8Y	22735	2021-06-03	2020-09-27	4.4	5.34	—	4.4	0.002	0.53	0.0	0.05	10.71	0.00	1.137	21.50	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.004	0.66	0.0	0.04	11.73	0.00	2.050	20.37	0.00	6.2	93.6	0.2	-0.71	1.49	0.82	0.82	—	25560	3242	8	0	23	0	0	logfile
✔	7NG4	12307	2021-06-02	2021-02-08	4.4	5.07	4.36	3.8	0.008	1.02	0.0	0.05	13.15	0.01	1.641	23.04	0.12	7.4	92.6	0.0	-2.05	0.89	0.78	—	3.8	0.003	0.58	0.0	0.04	12.72	0.00	1.829	11.93	0.00	5.0	95.0	0.0	-0.76	1.06	0.87	0.77	—	74795	4656	13	0	65	0	37485	logfile
✔	7K3V	22657	2021-06-04	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.004	0.80	0.0	0.04	14.89	0.01	2.009	2.36	0.00	1.2	98.8	0.0	4.04	0.21	0.72	0.82	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7KCQ	22817	2021-06-02	2020-10-07	3.2	3.31	—	3.3	0.011	0.82	0.0	0.06	15.99	0.00	1.987	7.49	7.09	6.1	93.9	0.0	-4.00	0.77	0.87	4.16	3.3	0.003	0.53	0.0	0.04	15.84	0.00	2.168	8.46	0.00	2.6	97.4	0.0	-0.25	0.36	0.76	0.86	3.37	10332	1388	8	0	8	0	0	logfile
✔	7AoD	11841	2021-06-05	2020-10-14	4.5	4.61	—	4.5	0.007	0.89	0.0	0.05	14.84	0.01	1.858	26.98	1.95	10.7	88.9	0.3	-4.20	0.79	0.75	—	4.4	0.003	0.78	0.0	0.04	13.83	0.01	2.008	18.83	0.00	8.5	91.5	0.0	-1.37	1.38	0.75	0.65	—	59256	7466	34	0	12	0	0	logfile
✔	6W5M	21543	2021-06-04	2020-03-13	4.6	4.75	—	4.6	0.005	0.68	0.0	0.04	25.33	0.00	1.832	36.36	1.58	5.9	94.1	0.0	-2.98	0.80	0.75	—	4.6	0.003	0.69	0.0	0.04	24.91	0.01	2.106	17.69	0.00	3.8	96.2	0.0	-0.37	1.83	0.80	0.77	—	19574	1729	14	292	0	0	0	logfile
✔	7BWA	30231	2021-06-02	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	40.57	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.73	0.0	0.04	13.99	0.01	2.149	19.46	0.00	8.8	91.2	0.0	-2.75	1.68	0.77	0.57	—	11670	1444	4	0	0	0	0	logfile
✔	7BW7	30229	2021-06-01	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	39.44	0.00	23.4	76.6	0.0	-5.62	0.73	0.68	—	4.4	0.003	0.77	0.0	0.05	14.96	0.00	2.227	15.59	0.00	10.4	89.6	0.0	-3.59	1.62	0.70	0.63	—	8824	1091	3	0	0	0	0	logfile

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