Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CRQ	7568	2021-09-04	2018-03-19	4.2	3.69	4.20	4.1	0.014	1.45	1.0	0.08	11.39	0.01	1.839	7.14	1.06	2.3	97.7	0.0	1.77	0.68	0.76	—	3.6	0.008	0.93	1.0	0.05	13.58	0.01	2.047	13.86	0.00	7.2	92.8	0.0	-0.68	1.78	0.68	0.78	—	20271	2391	18	0	105	0	0	logfile
✔	5W9K	8786	2021-09-05	2017-06-23	4.6	4.70	4.66	4.6	0.013	1.75	2.0	0.08	10.40	0.01	1.342	4.22	0.14	3.7	95.7	0.6	1.72	0.72	0.74	—	4.6	0.003	0.69	0.0	0.04	12.50	0.00	2.123	12.42	0.00	5.6	94.3	0.2	0.22	1.46	0.73	0.77	—	32873	4244	12	0	0	0	0	logfile
✔	6R92	4766	2021-09-06	2019-04-02	4.8	6.24	—	5.4	0.009	1.11	6.0	0.09	23.81	0.01	2.054	4.26	0.36	5.0	94.7	0.4	-1.02	0.87	0.72	—	5.4	0.005	0.71	0.0	0.06	24.67	0.00	1.892	20.85	0.00	9.0	90.9	0.1	-1.63	1.46	0.88	0.75	—	40519	1974	12	288	2	0	19019	logfile
✔	6BX3	7303	2021-09-03	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.68	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.009	1.11	1.0	0.05	13.43	0.01	2.022	26.92	0.00	17.5	82.5	0.1	-3.47	1.45	0.74	0.73	—	10456	1413	7	0	0	0	0	logfile
✔	6MET	9109	2021-09-03	2018-09-07	4.5	4.68	4.22	4.4	0.006	0.99	0.0	0.15	10.66	0.01	1.985	11.91	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.003	0.83	0.0	0.07	11.54	0.00	2.159	14.72	0.00	7.3	92.7	0.0	-1.62	1.33	0.69	0.81	—	8911	1074	5	0	32	0	0	logfile
✔	6CS1	7579	2021-09-04	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.005	0.88	0.0	0.05	11.64	0.01	2.034	26.20	0.00	10.3	89.7	0.0	-2.65	2.44	0.73	0.63	—	25995	3202	6	0	75	0	0	logfile
✔	5FYW	3378	2021-09-06	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	16.78	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.004	0.72	0.0	0.04	14.50	0.00	2.008	19.44	0.00	5.6	94.2	0.2	0.39	1.75	0.83	0.81	—	41710	5176	30	94	11	0	0	logfile
✔	6i7T	4428	2021-09-06	2018-11-17	4.61	4.75	4.92	4.6	0.006	1.17	6.0	0.07	13.63	0.01	2.245	7.07	2.54	12.0	87.5	0.4	-4.32	0.74	0.59	—	4.6	0.003	0.72	0.0	0.05	12.86	0.00	2.156	14.44	0.00	9.4	90.5	0.1	-1.89	1.65	0.69	0.55	—	37004	4682	16	0	0	0	0	logfile
✔	6i84	4429	2021-09-06	2018-11-19	4.4	8.42	4.46	3.4	0.008	1.11	0.0	0.06	21.96	0.01	2.063	11.17	0.79	11.8	88.2	0.1	-4.33	0.79	0.57	—	3.4	0.004	0.67	0.0	0.04	20.98	0.00	2.025	22.92	0.00	9.0	91.0	0.0	-1.11	0.79	0.91	0.78	—	43988	4665	29	337	9	0	0	logfile
✔	6JPU	9871	2021-09-05	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	69.43	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.005	0.89	0.0	0.05	13.59	0.01	1.796	135.54	0.00	11.9	88.0	0.1	-2.09	1.27	0.81	0.80	—	30378	3462	6	0	0	0	2610	logfile
✔	6DZY	8942	2021-09-02	2018-07-05	4.1	4.52	4.39	4.6	0.008	0.95	4.0	0.08	8.53	0.01	1.386	8.88	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.82	0.0	0.04	13.26	0.00	2.174	16.41	0.00	5.5	94.4	0.1	-0.25	1.93	0.45	0.69	—	7842	988	5	0	4	0	0	logfile
✔	6S85	10116	2021-09-03	2019-07-08	4.2	4.30	—	4.2	0.008	1.01	3.0	0.06	19.02	0.01	1.775	18.54	1.03	7.8	91.9	0.3	-3.59	0.84	0.82	—	4.2	0.003	0.63	0.0	0.04	17.73	0.00	1.718	12.79	0.00	4.1	95.8	0.1	-0.63	1.07	0.84	0.81	—	13018	1486	10	63	8	0	0	logfile
✔	5W9J	8785	2021-09-05	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.58	0.0	0.07	11.98	0.02	1.881	5.22	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	4.7	0.003	0.67	0.0	0.04	12.52	0.00	2.158	12.22	0.00	5.1	94.7	0.1	0.33	1.35	0.74	0.68	—	32958	4257	12	0	0	0	0	logfile
✔	5ADY	3133	2021-09-06	2015-08-25	4.5	4.75	—	4.5	0.011	1.27	0.0	0.06	18.75	0.01	1.391	57.38	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	4.5	0.002	0.61	0.0	0.03	16.55	0.00	2.004	18.08	0.00	9.5	89.4	1.1	-2.56	2.03	0.86	0.83	—	97364	4197	35	3020	2	0	0	logfile
✔	6CNo	7539	2021-09-03	2018-03-08	4.7	4.91	—	4.8	0.006	1.03	0.0	0.05	9.24	0.01	1.936	5.60	0.26	3.5	96.5	0.0	-2.70	0.64	0.79	—	4.8	0.033	0.93	0.0	0.04	12.88	0.00	2.048	19.89	0.00	2.4	97.6	0.0	1.53	2.01	0.64	0.78	—	15428	2024	12	0	12	0	0	logfile
✔	6RiB	4887	2021-09-03	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.011	1.29	0.0	0.06	14.63	0.01	2.071	31.15	0.00	23.5	76.5	0.0	-5.95	1.65	0.78	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6R90	4764	2021-09-06	2019-04-02	4.5	4.77	—	4.6	0.008	0.88	0.0	0.06	22.74	0.01	2.107	4.11	0.24	3.1	96.6	0.3	-1.12	0.76	0.72	—	4.6	0.004	0.69	0.0	0.05	23.49	0.00	1.935	14.12	0.00	6.2	93.7	0.1	-1.68	1.64	0.78	0.75	—	40070	1944	12	288	2	0	18802	logfile
✔	6oGG	20057	2021-09-09	2019-04-02	4.2	5.09	—	3.4	0.006	0.85	0.0	0.07	13.94	0.01	2.108	14.56	0.56	10.6	89.3	0.1	-4.88	0.87	0.76	—	3.4	0.004	0.73	0.0	0.04	18.42	0.01	1.737	37.85	0.00	13.1	86.9	0.1	-3.30	1.89	0.88	0.81	—	147733	6113	55	4655	0	0	0	logfile
✔	6U5S	20654	2021-09-05	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	5.93	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.003	0.48	0.0	0.04	13.66	0.00	2.129	6.89	0.00	3.4	96.6	0.0	0.18	1.25	0.84	0.85	4.11	21461	1504	8	0	20	0	9755	logfile
✔	5LC5	4032	2021-09-07	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.86	0.01	1.587	6.01	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	4.3	0.012	1.86	0.0	0.33	13.12	0.01	2.094	16.30	0.00	10.6	88.5	0.9	-1.54	1.73	0.71	0.77	—	51718	5916	52	0	1988	0	0	logfile

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