Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CZ6	30507	2021-12-01	2020-09-07	4.1	4.07	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	53.34	0.00	8.1	91.9	0.0	-1.66	0.61	0.58	—	4.1	0.004	0.82	0.0	0.05	10.87	0.01	2.091	15.47	0.00	6.2	93.8	0.0	-1.99	0.85	0.61	0.72	—	5442	756	6	0	0	0	0	logfile
✔	6ZPi	11340	2021-12-01	2020-07-08	4.5	4.63	—	4.4	0.007	1.14	3.0	0.06	15.34	0.01	1.667	13.95	0.00	4.6	95.4	0.0	-0.24	0.77	0.52	—	4.4	0.003	0.71	0.0	0.04	14.45	0.01	1.945	16.05	0.00	5.1	94.9	0.1	0.13	1.11	0.84	0.79	—	9412	1184	6	1	5	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7A92	11682	2021-12-01	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.83	0.0	0.06	14.45	0.01	2.222	3.86	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	4.2	0.003	0.60	0.0	0.04	13.40	0.00	2.079	6.92	0.00	3.1	96.9	0.0	-0.13	0.77	0.89	0.83	—	10040	1231	5	0	10	0	0	logfile
✔	7D76	30602	2021-12-01	2020-10-03	3.1	3.39	—	3.4	0.020	0.85	0.0	0.06	13.93	0.01	2.167	8.25	0.00	4.7	95.3	0.0	-2.55	0.65	0.81	3.21	3.4	0.004	0.67	0.0	0.04	15.51	0.01	2.170	8.89	0.00	4.5	95.5	0.0	0.41	1.49	0.65	0.81	2.69	7015	874	6	0	7	0	0	logfile
✔	6X15	21989	2021-12-01	2020-05-18	3.05	3.20	—	3.2	0.008	1.25	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.53	0.0	0.04	15.28	0.00	2.174	6.17	0.00	2.7	97.3	0.0	1.85	0.44	0.73	0.88	2.48	10026	1260	9	0	51	9	0	logfile
✔	7KPW	22990	2021-12-01	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	6VRA	21365	2021-12-01	2020-02-07	3.3	3.58	—	3.4	0.008	1.03	4.0	0.06	15.67	0.01	2.214	6.31	0.80	8.5	91.5	0.0	-3.93	0.84	0.85	2.53	3.4	0.009	1.02	4.0	0.04	16.26	0.00	1.684	11.80	0.00	5.6	94.4	0.0	-1.33	0.45	0.83	0.86	2.23	57744	7208	20	0	16	0	0	logfile
✔	7NRX	12552	2021-12-01	2021-03-04	3.55	3.48	3.32	3.7	0.010	1.20	0.0	0.09	12.76	0.01	2.356	6.37	0.00	8.7	91.3	0.0	-3.60	0.47	0.83	4.85	3.6	0.004	0.68	0.0	0.05	17.26	0.00	2.208	10.65	0.00	6.7	93.3	0.0	-3.21	1.50	0.44	0.81	4.81	5870	770	10	0	0	0	0	logfile
✔	7KY9	23072	2021-12-02	2020-12-07	4.05	4.67	—	4.5	0.003	0.68	0.0	0.05	13.43	0.00	2.206	15.79	0.00	8.3	91.7	0.0	-1.25	0.67	0.71	—	4.5	0.004	0.73	0.0	0.05	13.65	0.00	2.070	23.03	0.00	9.9	90.1	0.0	-1.20	0.53	0.69	0.74	—	10354	1275	7	0	14	0	0	logfile
✔	6ZPG	11338	2021-12-01	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.85	0.0	0.05	15.43	0.00	2.151	21.12	0.00	7.4	92.6	0.0	-0.02	2.62	0.63	0.60	—	3808	463	1	0	0	0	0	logfile
✔	6X13	21987	2021-12-01	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.004	0.71	0.0	0.04	16.03	0.01	2.265	9.45	0.00	4.8	95.2	0.0	1.52	0.37	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	7K1V	22630	2021-12-01	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.71	0.0	0.04	14.11	0.01	2.178	18.70	0.00	5.2	94.8	0.0	-1.01	1.44	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7DTW	30856	2021-12-02	2021-01-06	4.5	4.74	—	3.6	0.007	0.99	0.0	0.06	13.61	0.01	2.267	9.03	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.212	7.49	0.00	8.4	91.6	0.0	-1.22	0.53	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	6ZRQ	11382	2021-12-01	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile
✔	7K45	22660	2021-12-01	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.18	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✔	6ZD0	11172	2021-12-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	7L0S	23102	2021-12-01	2020-12-12	4.5	4.35	4.13	4.2	0.008	1.34	2.0	0.08	13.52	0.01	2.107	9.65	1.39	6.0	94.0	0.0	-3.19	0.61	0.63	—	4.2	0.004	0.78	0.0	0.04	13.21	0.00	2.147	19.30	0.00	3.8	96.2	0.0	-0.05	3.56	0.64	0.74	—	7906	1001	5	0	0	0	0	logfile
✔	7JLX	22383	2021-12-01	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	7B6E	12053	2021-12-01	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	5.1	0.004	0.97	0.0	0.05	15.19	0.01	2.191	25.33	0.00	10.6	89.4	0.0	-1.71	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile

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