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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TD1 | 25820 | 2023-07-07 | 2021-12-30 | 3.08 | 3.31 | — | 3.3 | 0.003 | 0.43 | 0.0 | 0.04 | 11.99 | 0.00 | 2.168 | 2.81 | 0.28 | 1.9 | 98.1 | 0.0 | -0.56 | 0.52 | 0.74 | 3.38 | 3.3 | 0.005 | 0.54 | 0.0 | 0.04 | 14.69 | 0.00 | 1.897 | 8.06 | 0.00 | 4.1 | 95.9 | 0.0 | 0.97 | 1.25 | 0.53 | 0.78 | 3.55 | 13492 | 906 | 5 | 0 | 1 | 0 | 6593 | logfile |
✔ | 6ZFo | 11184 | 2023-07-09 | 2020-06-17 | 4.4 | 4.43 | — | 4.4 | 0.003 | 0.56 | 0.0 | 0.04 | 10.41 | 0.00 | 2.157 | 3.58 | 1.30 | 4.5 | 95.5 | 0.0 | -0.66 | 0.49 | 0.51 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.04 | 11.46 | 0.00 | 1.946 | 11.31 | 0.00 | 5.3 | 94.7 | 0.0 | -1.00 | 1.56 | 0.53 | 0.59 | — | 18988 | 1252 | 8 | 0 | 2 | 0 | 9310 | logfile |
✔ | 6BF8 | 7092 | 2023-07-07 | 2017-10-26 | 4.2 | 4.69 | 4.96 | 7.4 | 0.007 | 1.21 | 0.0 | 0.06 | 11.02 | 0.01 | 2.252 | 7.53 | 0.00 | 3.8 | 96.2 | 0.0 | -4.13 | 0.80 | 0.71 | — | 4.0 | 0.006 | 0.94 | 0.0 | 0.05 | 12.91 | 0.01 | 2.020 | 39.14 | 0.00 | 10.8 | 89.2 | 0.0 | -2.19 | 2.36 | 0.82 | 0.75 | — | 15412 | 1888 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5oAF | 3773 | 2023-07-09 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | 4.1 | 0.004 | 0.72 | 0.0 | 0.04 | 12.91 | 0.00 | 2.119 | 16.11 | 0.00 | 4.4 | 95.5 | 0.1 | -0.37 | 3.72 | 0.73 | 0.73 | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8oNT | 17000 | 2023-07-03 | 2023-04-03 | 3.66 | 3.95 | 3.45 | 3.9 | 0.006 | 0.67 | 0.0 | 0.04 | 16.01 | 0.01 | 1.908 | 33.89 | 0.87 | 6.7 | 93.3 | 0.0 | 1.63 | 0.63 | 0.79 | 0.81 | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 15.80 | 0.00 | 2.083 | 7.87 | 0.00 | 5.6 | 94.4 | 0.0 | 1.77 | 0.33 | 0.63 | 0.77 | 1.05 | 4316 | 558 | 3 | 0 | 1 | 1 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2023-07-04 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.04 | 5.38 | 0.00 | 2.341 | 5.89 | 0.00 | 15.0 | 84.6 | 0.4 | -4.68 | 2.32 | 0.61 | 0.58 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YW8 | 6848 | 2023-07-20 | 2017-11-29 | 4.4 | 4.51 | 4.37 | 4.4 | 0.005 | 0.80 | 4.0 | 0.05 | 13.59 | 0.01 | 2.030 | 19.10 | 8.11 | 4.4 | 95.1 | 0.4 | -2.46 | 0.64 | 0.70 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.84 | 0.00 | 2.124 | 13.56 | 0.00 | 4.2 | 95.7 | 0.1 | 0.67 | 3.92 | 0.65 | 0.75 | — | 50524 | 6520 | 16 | 0 | 8 | 0 | 0 | logfile |
✔ | 6T7D | 10394 | 2023-07-04 | 2019-10-21 | 4.4 | 4.45 | 4.29 | 4.1 | 0.005 | 0.86 | 0.0 | 0.05 | 32.64 | 0.01 | 2.107 | 2.55 | 0.00 | 2.0 | 98.0 | 0.0 | -2.34 | 0.86 | 0.77 | — | 4.1 | 0.004 | 0.65 | 0.0 | 0.03 | 32.45 | 0.00 | 2.138 | 11.97 | 0.00 | 2.8 | 97.2 | 0.0 | 3.16 | 0.72 | 0.87 | 0.82 | — | 8209 | 853 | 11 | 234 | 0 | 0 | 0 | logfile |
✔ | 7ZH6 | 14725 | 2023-07-03 | 2022-04-05 | 3.67 | 4.10 | 0.95 | 4.2 | 0.006 | 0.90 | 0.0 | 0.06 | 16.13 | 0.01 | 1.607 | 26.36 | 1.26 | 6.4 | 93.6 | 0.0 | 0.99 | 0.54 | 0.73 | 1.36 | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 16.88 | 0.00 | 2.217 | 14.09 | 0.00 | 6.0 | 94.0 | 0.0 | 0.95 | 1.12 | 0.54 | 0.74 | 1.24 | 3771 | 478 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RQC | 4980 | 2023-07-19 | 2019-05-15 | 4.4 | 4.57 | 4.38 | 4.4 | 0.012 | 1.28 | 1.0 | 0.07 | 18.21 | 0.01 | 1.965 | 9.13 | 0.54 | 10.4 | 89.5 | 0.1 | -5.03 | 0.79 | 0.67 | — | 4.4 | 0.005 | 0.75 | 0.0 | 0.04 | 17.12 | 0.01 | 1.824 | 19.87 | 0.00 | 12.6 | 87.4 | 0.0 | -2.74 | 3.23 | 0.80 | 0.70 | — | 105223 | 6174 | 23 | 176 | 15 | 0 | 51978 | logfile |
✔ | 7KY9 | 23072 | 2023-07-05 | 2020-12-07 | 4.05 | 4.67 | — | 4.5 | 0.004 | 1.14 | 0.0 | 0.05 | 13.33 | 0.00 | 2.206 | 15.79 | 0.00 | 8.3 | 91.7 | 0.0 | -1.25 | 0.67 | 0.71 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.04 | 13.56 | 0.00 | 2.097 | 20.12 | 0.00 | 9.3 | 90.7 | 0.0 | -1.08 | 0.49 | 0.68 | 0.74 | — | 10354 | 1275 | 7 | 0 | 14 | 0 | 0 | logfile |
✔ | 6LQi | 0946 | 2023-07-12 | 2020-01-13 | 4.5 | 4.59 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.59 | 0.01 | 2.203 | 10.88 | 0.40 | 6.4 | 93.4 | 0.2 | -3.01 | 0.70 | 0.75 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.04 | 13.02 | 0.00 | 2.196 | 10.64 | 0.00 | 7.5 | 92.4 | 0.1 | -0.76 | 1.53 | 0.70 | 0.75 | — | 26934 | 3903 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A96 | 11686 | 2023-07-14 | 2020-09-01 | 4.8 | 5.70 | 4.94 | 4.9 | 0.003 | 0.49 | 1.0 | 0.04 | 5.85 | 0.00 | 2.236 | 3.91 | 0.82 | 10.8 | 89.2 | 0.0 | -4.46 | 0.88 | 0.77 | — | 4.9 | 0.002 | 0.63 | 0.0 | 0.04 | 9.04 | 0.00 | 2.114 | 10.16 | 0.00 | 3.3 | 96.6 | 0.0 | -0.85 | 0.87 | 0.89 | 0.82 | — | 29811 | 3783 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Fo0 | 4286 | 2023-07-05 | 2018-02-05 | 4.1 | 4.16 | 2.43 | 4.1 | 0.012 | 0.96 | 0.0 | 0.05 | 8.97 | 0.01 | 2.040 | 5.54 | 0.00 | 10.2 | 89.8 | 0.1 | -4.55 | 0.72 | 0.79 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 12.56 | 0.00 | 1.904 | 10.30 | 0.00 | 5.8 | 94.2 | 0.0 | -1.21 | 2.42 | 0.74 | 0.81 | — | 61356 | 3910 | 24 | 0 | 8 | 0 | 30362 | logfile |
✔ | 7DTW | 30856 | 2023-07-05 | 2021-01-06 | 4.5 | 4.74 | — | 3.6 | 0.008 | 1.01 | 0.0 | 0.06 | 13.74 | 0.01 | 2.267 | 9.20 | 0.00 | 10.3 | 89.7 | 0.0 | -4.26 | 0.71 | 0.78 | — | 3.7 | 0.002 | 0.59 | 0.0 | 0.05 | 12.54 | 0.00 | 2.233 | 7.27 | 0.00 | 8.1 | 91.9 | 0.0 | -1.09 | 0.58 | 0.71 | 0.79 | — | 10250 | 1556 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 5JUY | 8178 | 2023-07-12 | 2016-05-10 | 4.1 | 4.28 | — | 4.1 | 0.009 | 1.23 | 0.0 | 0.05 | 10.72 | 0.00 | 1.447 | 16.11 | 0.71 | 6.6 | 93.0 | 0.4 | -3.18 | 0.76 | 0.55 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 12.04 | 0.00 | 2.092 | 12.45 | 0.00 | 5.3 | 94.6 | 0.1 | -0.61 | 1.62 | 0.84 | 0.69 | — | 76058 | 9461 | 32 | 0 | 14 | 0 | 0 | logfile |
✔ | 7DTU | 30854 | 2023-07-05 | 2021-01-06 | 4.4 | 4.54 | — | 3.7 | 0.006 | 0.90 | 0.0 | 0.06 | 14.57 | 0.01 | 2.277 | 6.85 | 0.00 | 9.4 | 90.6 | 0.0 | -3.95 | 0.68 | 0.79 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.14 | 0.00 | 2.169 | 11.99 | 0.00 | 6.5 | 93.5 | 0.0 | -0.70 | 1.10 | 0.68 | 0.80 | — | 10846 | 1558 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 7EU8 | 31309 | 2023-07-09 | 2021-05-16 | 4.07 | 4.11 | — | 3.6 | 0.002 | 0.42 | 0.0 | 0.10 | 7.80 | 0.00 | 2.206 | 3.16 | 3.51 | 2.0 | 97.9 | 0.1 | 1.10 | 0.75 | 0.61 | — | 3.4 | 0.002 | 0.62 | 0.0 | 0.06 | 8.46 | 0.00 | 2.129 | 7.57 | 0.00 | 3.8 | 96.0 | 0.2 | 0.14 | 1.37 | 0.79 | 0.69 | — | 18670 | 3010 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7DXK | 30912 | 2023-07-10 | 2021-01-19 | 4.1 | 4.08 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.05 | 15.55 | 0.01 | 2.251 | 5.93 | 0.48 | 5.2 | 94.6 | 0.2 | -3.75 | 0.79 | 0.81 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 14.45 | 0.00 | 2.185 | 11.53 | 0.00 | 4.9 | 95.1 | 0.0 | 0.82 | 3.11 | 0.79 | 0.79 | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S1N | 10081 | 2023-07-09 | 2019-06-19 | 4.86 | 4.98 | — | 4.8 | 0.009 | 1.13 | 2.0 | 0.06 | 17.87 | 0.01 | 1.929 | 9.59 | 0.83 | 6.3 | 93.4 | 0.4 | -3.47 | 0.73 | 0.53 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 16.36 | 0.00 | 2.138 | 16.34 | 0.00 | 4.6 | 95.3 | 0.0 | -0.83 | 3.65 | 0.83 | 0.73 | — | 19726 | 2399 | 11 | 50 | 3 | 0 | 0 | logfile |