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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6JXC | 9893 | 2022-05-13 | 2019-04-23 | 4.1 | 4.20 | — | 4.1 | 0.018 | 1.71 | 0.0 | 0.09 | 8.99 | 0.01 | 2.221 | 4.88 | 0.38 | 9.3 | 87.7 | 3.0 | -1.28 | 0.50 | 0.61 | — | 4.1 | 0.003 | 0.81 | 0.0 | 0.04 | 12.18 | 0.00 | 2.097 | 10.81 | 0.00 | 12.1 | 86.1 | 1.8 | 0.15 | 0.97 | 0.55 | 0.70 | — | 15270 | 2345 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2022-05-12 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 4.96 | 0.00 | 2.368 | 4.42 | 0.00 | 8.3 | 91.7 | 0.0 | -1.63 | 1.58 | 0.82 | 0.76 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-05-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.100 | 23.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6PUR | 20479 | 2022-05-17 | 2019-07-18 | 4.4 | 5.34 | — | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 14.69 | 0.01 | 2.255 | 9.98 | 1.66 | 7.9 | 91.6 | 0.5 | -3.61 | 0.74 | 0.81 | — | 4.1 | 0.004 | 0.68 | 0.0 | 0.04 | 13.33 | 0.00 | 2.124 | 14.61 | 0.00 | 7.8 | 92.1 | 0.1 | 0.13 | 0.56 | 0.75 | 0.84 | — | 37268 | 5224 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6MZJ | 9303 | 2022-05-13 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.014 | 1.50 | 0.0 | 0.08 | 8.01 | 0.00 | 2.352 | 1.32 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | 4.5 | 0.004 | 0.77 | 0.0 | 0.05 | 7.02 | 0.00 | 2.212 | 5.11 | 0.00 | 7.1 | 92.9 | 0.1 | -1.34 | 2.19 | 0.77 | 0.65 | — | 12653 | 2088 | 10 | 0 | 149 | 0 | 0 | logfile |
✔ | 6R25 | 4710 | 2022-05-14 | 2019-03-15 | 4.61 | 8.06 | — | 3.8 | 0.009 | 1.05 | 0.0 | 0.06 | 25.57 | 0.02 | 1.036 | 12.98 | 5.67 | 4.9 | 93.8 | 1.3 | -2.97 | 0.74 | 0.45 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 25.45 | 0.00 | 2.059 | 13.80 | 0.00 | 2.7 | 97.2 | 0.1 | 1.14 | 1.46 | 0.89 | 0.72 | — | 18654 | 1544 | 16 | 294 | 4 | 314 | 0 | logfile |
✔ | 6SH4 | 10193 | 2022-05-13 | 2019-08-05 | 4.4 | 4.48 | — | 4.3 | 0.005 | 1.01 | 0.0 | 0.07 | 5.13 | 0.00 | 2.405 | 2.99 | 0.00 | 6.8 | 92.4 | 0.8 | -2.94 | 0.72 | 0.77 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.04 | 5.13 | 0.00 | 2.207 | 2.29 | 0.00 | 8.6 | 91.1 | 0.3 | -0.62 | 2.29 | 0.74 | 0.83 | — | 12957 | 2632 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRU | 9213 | 2022-05-13 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QG2 | 4545 | 2022-05-17 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.73 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.126 | 17.40 | 0.00 | 10.5 | 88.9 | 0.6 | -1.87 | 1.68 | 0.69 | 0.56 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oHY | 20074 | 2022-05-13 | 2019-04-08 | 4.1 | 4.28 | 4.05 | 4.2 | 0.006 | 0.98 | 0.0 | 0.06 | 11.07 | 0.01 | 2.288 | 4.35 | 0.40 | 10.5 | 88.9 | 0.5 | -3.30 | 0.79 | 0.79 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.05 | 12.62 | 0.00 | 2.066 | 10.01 | 0.00 | 9.7 | 90.2 | 0.1 | -1.81 | 1.24 | 0.80 | 0.81 | — | 15192 | 1701 | 12 | 0 | 126 | 0 | 0 | logfile |
✔ | 6oUA | 20200 | 2022-05-12 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.13 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | 4.3 | 0.003 | 0.84 | 0.0 | 0.05 | 14.52 | 0.00 | 2.107 | 11.12 | 0.00 | 13.2 | 86.8 | 0.0 | -1.96 | 1.15 | 0.72 | 0.77 | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R1U | 4705 | 2022-05-14 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.65 | 0.02 | 0.544 | 12.09 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 25.18 | 0.00 | 2.059 | 11.83 | 0.00 | 2.5 | 97.4 | 0.1 | 1.08 | 1.07 | 0.89 | 0.78 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✔ | 6RZA | 10060 | 2022-05-13 | 2019-06-13 | 4.5 | 4.56 | 4.30 | 4.5 | 0.009 | 1.85 | 16.0 | 0.11 | 17.44 | 0.01 | 2.089 | 9.66 | 6.90 | 4.4 | 94.9 | 0.6 | -2.20 | 0.60 | 0.71 | — | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 14.93 | 0.01 | 1.935 | 20.45 | 0.00 | 4.6 | 95.3 | 0.1 | -0.64 | 2.78 | 0.60 | 0.70 | — | 14908 | 1867 | 9 | 2 | 6 | 0 | 0 | logfile |
✔ | 6DFG | 7875 | 2022-05-14 | 2018-05-14 | 4.42 | 4.61 | 4.39 | 4.4 | 0.007 | 1.04 | 0.0 | 0.06 | 10.31 | 0.01 | 2.240 | 7.83 | 0.29 | 11.0 | 89.0 | 0.0 | -4.24 | 0.79 | 0.81 | — | 4.4 | 0.005 | 0.79 | 0.0 | 0.05 | 11.50 | 0.00 | 2.065 | 19.02 | 0.00 | 10.9 | 89.0 | 0.1 | -2.66 | 1.66 | 0.80 | 0.84 | — | 20190 | 2355 | 18 | 0 | 135 | 0 | 0 | logfile |
✔ | 6BBM | 7076 | 2022-05-15 | 2017-10-18 | 4.1 | 4.24 | — | 4.1 | 0.008 | 1.20 | 0.0 | 0.06 | 16.70 | 0.01 | 2.231 | 9.95 | 0.58 | 13.8 | 86.1 | 0.2 | -5.97 | 0.74 | 0.74 | — | 4.1 | 0.005 | 0.83 | 0.0 | 0.05 | 15.33 | 0.01 | 2.124 | 18.66 | 0.00 | 13.9 | 86.0 | 0.0 | -3.60 | 0.79 | 0.75 | 0.75 | — | 23956 | 2662 | 15 | 0 | 623 | 0 | 0 | logfile |
✔ | 6RZB | 10061 | 2022-05-12 | 2019-06-13 | 4.1 | 4.19 | 3.09 | 4.2 | 0.009 | 1.85 | 5.0 | 0.11 | 17.62 | 0.01 | 2.096 | 9.49 | 5.37 | 4.2 | 95.5 | 0.3 | -2.81 | 0.68 | 0.84 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 14.83 | 0.00 | 1.882 | 18.54 | 0.00 | 4.0 | 96.0 | 0.0 | -0.38 | 1.03 | 0.69 | 0.83 | — | 8001 | 1001 | 5 | 1 | 3 | 0 | 0 | logfile |
✔ | 6GSA | 0051 | 2022-05-14 | 2018-06-13 | 4.2 | 5.94 | — | 5.0 | 0.011 | 1.24 | 4.0 | 0.09 | 12.00 | 0.01 | 2.189 | 4.82 | 1.75 | 5.1 | 94.7 | 0.2 | -2.92 | 0.67 | 0.44 | — | 5.0 | 0.003 | 0.71 | 0.0 | 0.04 | 12.35 | 0.00 | 2.145 | 17.00 | 0.00 | 4.7 | 95.3 | 0.0 | 0.04 | 1.16 | 0.83 | 0.73 | — | 16272 | 1999 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2022-05-12 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.52 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 16.86 | 0.01 | 1.006 | 33.78 | 0.00 | 8.7 | 90.8 | 0.5 | -1.87 | 2.17 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 5FYW | 3378 | 2022-05-17 | 2016-03-10 | 4.35 | 4.82 | — | 4.3 | 0.010 | 1.14 | 2.0 | 0.07 | 12.79 | 0.01 | 0.245 | 17.16 | 0.77 | 5.4 | 94.1 | 0.5 | -2.84 | 0.80 | 0.75 | — | 4.3 | 0.006 | 0.82 | 0.0 | 0.04 | 14.56 | 0.01 | 1.901 | 23.74 | 0.00 | 6.7 | 93.1 | 0.2 | -0.30 | 2.89 | 0.83 | 0.82 | — | 41710 | 5176 | 30 | 94 | 11 | 0 | 0 | logfile |
✔ | 6R92 | 4766 | 2022-05-17 | 2019-04-02 | 4.8 | 6.24 | — | 5.4 | 0.009 | 1.11 | 6.0 | 0.09 | 23.81 | 0.01 | 2.054 | 4.43 | 0.36 | 5.0 | 94.7 | 0.4 | -1.02 | 0.87 | 0.72 | — | 5.4 | 0.004 | 0.71 | 0.0 | 0.06 | 24.48 | 0.00 | 1.852 | 19.70 | 0.00 | 8.1 | 91.8 | 0.1 | -1.82 | 1.40 | 0.88 | 0.74 | — | 40519 | 1974 | 12 | 290 | 0 | 0 | 19019 | logfile |