Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VV6	32139	2023-04-19	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.004	0.65	0.0	0.04	17.06	0.00	2.195	6.88	0.00	3.3	96.7	0.0	2.95	0.67	0.65	0.86	1.49	2227	271	1	0	2	0	0	logfile
✔	7DMZ	30775	2023-04-25	2020-12-08	4.3	4.41	—	4.4	0.009	1.02	0.0	0.06	17.09	0.01	2.063	7.32	0.74	5.4	94.6	0.0	-3.24	0.66	0.80	—	4.4	0.003	0.67	0.0	0.04	15.70	0.00	1.958	10.05	0.00	5.2	94.8	0.0	-0.97	1.52	0.67	0.79	—	20396	2562	12	0	11	0	0	logfile
✔	6QA9	4482	2023-04-23	2018-12-19	4.1	4.29	4.14	4.1	0.007	1.21	0.0	1.03	11.43	0.01	2.226	7.67	0.44	12.0	88.0	0.1	-3.97	0.75	0.78	—	4.1	0.009	1.72	0.0	0.31	13.09	0.01	2.072	19.93	0.00	10.6	89.4	0.0	-1.44	1.04	0.75	0.80	—	65403	8091	58	0	19	0	0	logfile
✔	7KCQ	22817	2023-04-21	2020-10-07	3.2	3.31	—	3.3	0.011	0.80	0.0	0.06	15.99	0.00	1.987	7.49	7.09	6.1	93.9	0.0	-4.00	0.77	0.87	4.16	3.3	0.003	0.52	0.0	0.04	15.79	0.00	2.137	8.90	0.00	2.6	97.4	0.0	-0.22	1.13	0.75	0.87	3.47	10332	1388	8	0	8	0	0	logfile
✔	7TAS	25783	2023-04-19	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.50	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.69	0.0	0.04	14.00	0.00	2.248	5.95	0.00	3.7	96.3	0.0	-0.17	0.53	0.65	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	8AP9	15562	2023-04-25	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.61	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.17	0.00	2.147	3.87	0.00	3.2	96.8	0.0	-1.39	1.39	0.63	0.86	3.40	19658	1285	14	0	1	0	9972	logfile
✔	7NKi	12440	2023-04-28	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.003	0.69	0.0	0.04	14.03	0.00	1.901	21.72	0.00	6.5	93.5	0.0	-1.27	2.38	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	7NK2	12429	2023-04-28	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.005	0.80	0.0	0.04	13.93	0.01	1.842	25.56	0.00	9.2	90.8	0.0	-1.77	4.62	0.74	0.69	—	28776	1794	6	23	0	0	13868	logfile
✔	7NK1	12428	2023-04-28	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.004	0.68	0.0	0.04	14.15	0.00	1.835	21.74	0.00	6.8	93.2	0.0	-1.16	1.62	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	7P05	13144	2023-04-25	2021-06-29	3.13	3.16	—	3.3	0.008	0.87	0.0	0.04	13.66	0.01	1.997	7.44	0.09	4.1	95.9	0.0	0.57	0.66	0.82	3.58	3.3	0.004	0.54	0.0	0.04	14.62	0.00	1.976	5.82	0.00	4.0	96.0	0.0	1.12	0.78	0.67	0.84	3.24	21576	1353	1	0	3	0	10675	logfile
✔	7TT6	26112	2023-04-23	2022-01-31	4.3	4.50	—	4.4	0.005	0.91	0.0	0.05	10.73	0.01	2.190	3.14	0.00	1.4	98.6	0.0	0.38	0.64	0.69	—	4.4	0.002	0.57	0.0	0.04	12.24	0.00	1.969	7.27	0.00	2.4	97.6	0.0	0.18	1.18	0.66	0.75	—	14047	915	5	0	0	0	6839	logfile
✔	7WP0	32665	2023-04-19	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.49	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.003	0.66	0.0	0.04	15.95	0.00	2.286	10.65	0.00	8.0	92.0	0.0	-1.94	0.56	0.64	0.79	2.56	3174	407	3	0	1	0	0	logfile
✔	7LYS	23600	2023-04-23	2021-03-08	3.05	2.55	3.08	3.1	0.003	0.54	0.0	0.04	17.65	0.00	1.976	5.82	0.17	0.0	100.0	0.0	-1.46	0.83	0.83	2.05	3.1	0.003	0.55	0.0	0.04	18.37	0.00	1.996	6.26	0.00	3.6	96.4	0.0	1.10	0.36	0.83	0.84	2.10	13573	669	4	89	0	0	6374	logfile
✔	6LN9	0928	2023-04-20	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.72	0.00	1.333	10.18	0.00	4.3	95.7	0.0	-0.24	0.52	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	7TT0	26106	2023-04-23	2022-01-31	4.3	4.51	—	4.4	0.005	0.84	0.0	0.05	10.42	0.00	2.151	3.09	0.00	1.2	98.8	0.0	1.30	0.68	0.75	—	4.4	0.003	0.56	0.0	0.04	12.19	0.00	1.948	8.53	0.00	3.2	96.8	0.0	0.59	1.10	0.69	0.77	—	14884	962	5	0	0	0	7253	logfile
✔	7TT5	26111	2023-04-23	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.59	0.0	0.04	12.22	0.00	1.862	9.68	0.00	3.4	96.6	0.0	0.38	1.20	0.69	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	7oU2	13073	2023-04-21	2021-06-11	4.8	4.23	—	2.6	0.013	1.80	4.0	0.12	14.07	0.01	2.465	5.22	0.09	1.3	98.7	0.0	1.53	0.85	0.64	—	2.3	0.005	0.87	0.0	0.05	14.06	0.01	2.144	31.11	0.00	3.6	96.4	0.0	-0.34	1.67	0.89	0.72	—	10798	1371	4	0	2	0	0	logfile
✔	7NJ3	12371	2023-04-28	2021-02-15	4.48	4.72	—	4.6	0.004	0.70	1.0	0.05	13.64	0.00	1.907	8.92	0.38	4.2	95.8	0.0	-0.73	0.57	0.36	—	4.6	0.006	0.81	0.0	0.04	13.81	0.01	1.754	25.13	0.00	8.4	91.6	0.0	-2.08	2.79	0.72	0.62	—	28778	1795	6	23	0	0	13868	logfile
✔	7M3J	23655	2023-04-21	2021-03-18	4.1	3.93	—	3.9	0.010	1.10	3.0	0.07	11.75	0.01	2.274	2.71	0.12	5.8	94.2	0.0	-2.70	0.82	0.82	—	3.9	0.002	0.58	0.0	0.04	11.67	0.00	2.300	4.24	0.00	4.2	95.8	0.0	-0.50	1.18	0.82	0.81	—	11001	1562	5	0	11	0	0	logfile
✔	6PZB	20533	2023-04-20	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.72	0.00	1.992	8.78	0.00	6.4	93.6	0.0	0.88	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile

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