Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JXC	9893	2022-05-13	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.88	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.81	0.0	0.04	12.18	0.00	2.097	10.81	0.00	12.1	86.1	1.8	0.15	0.97	0.55	0.70	—	15270	2345	1	0	0	0	0	logfile
✔	6CoZ	7545	2022-05-12	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	4UQ8	2676	2022-05-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6PUR	20479	2022-05-17	2019-07-18	4.4	5.34	—	4.1	0.008	1.07	0.0	0.06	14.69	0.01	2.255	9.98	1.66	7.9	91.6	0.5	-3.61	0.74	0.81	—	4.1	0.004	0.68	0.0	0.04	13.33	0.00	2.124	14.61	0.00	7.8	92.1	0.1	0.13	0.56	0.75	0.84	—	37268	5224	8	0	8	0	0	logfile
✔	6MZJ	9303	2022-05-13	2018-11-05	4.8	5.06	—	4.4	0.014	1.50	0.0	0.08	8.01	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.004	0.77	0.0	0.05	7.02	0.00	2.212	5.11	0.00	7.1	92.9	0.1	-1.34	2.19	0.77	0.65	—	12653	2088	10	0	149	0	0	logfile
✔	6R25	4710	2022-05-14	2019-03-15	4.61	8.06	—	3.8	0.009	1.05	0.0	0.06	25.57	0.02	1.036	12.98	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.003	0.63	0.0	0.04	25.45	0.00	2.059	13.80	0.00	2.7	97.2	0.1	1.14	1.46	0.89	0.72	—	18654	1544	16	294	4	314	0	logfile
✔	6SH4	10193	2022-05-13	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.76	0.0	0.04	5.13	0.00	2.207	2.29	0.00	8.6	91.1	0.3	-0.62	2.29	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	6MRU	9213	2022-05-13	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6QG2	4545	2022-05-17	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.73	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.126	17.40	0.00	10.5	88.9	0.6	-1.87	1.68	0.69	0.56	—	38664	4961	16	0	0	0	0	logfile
✔	6oHY	20074	2022-05-13	2019-04-08	4.1	4.28	4.05	4.2	0.006	0.98	0.0	0.06	11.07	0.01	2.288	4.35	0.40	10.5	88.9	0.5	-3.30	0.79	0.79	—	4.2	0.003	0.67	0.0	0.05	12.62	0.00	2.066	10.01	0.00	9.7	90.2	0.1	-1.81	1.24	0.80	0.81	—	15192	1701	12	0	126	0	0	logfile
✔	6oUA	20200	2022-05-12	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.13	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	4.3	0.003	0.84	0.0	0.05	14.52	0.00	2.107	11.12	0.00	13.2	86.8	0.0	-1.96	1.15	0.72	0.77	—	5208	637	3	0	0	0	0	logfile
✔	6R1U	4705	2022-05-14	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.65	0.02	0.544	12.09	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.003	0.65	0.0	0.04	25.18	0.00	2.059	11.83	0.00	2.5	97.4	0.1	1.08	1.07	0.89	0.78	—	18394	1550	14	294	4	0	0	logfile
✔	6RZA	10060	2022-05-13	2019-06-13	4.5	4.56	4.30	4.5	0.009	1.85	16.0	0.11	17.44	0.01	2.089	9.66	6.90	4.4	94.9	0.6	-2.20	0.60	0.71	—	4.5	0.003	0.74	0.0	0.04	14.93	0.01	1.935	20.45	0.00	4.6	95.3	0.1	-0.64	2.78	0.60	0.70	—	14908	1867	9	2	6	0	0	logfile
✔	6DFG	7875	2022-05-14	2018-05-14	4.42	4.61	4.39	4.4	0.007	1.04	0.0	0.06	10.31	0.01	2.240	7.83	0.29	11.0	89.0	0.0	-4.24	0.79	0.81	—	4.4	0.005	0.79	0.0	0.05	11.50	0.00	2.065	19.02	0.00	10.9	89.0	0.1	-2.66	1.66	0.80	0.84	—	20190	2355	18	0	135	0	0	logfile
✔	6BBM	7076	2022-05-15	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.95	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	4.1	0.005	0.83	0.0	0.05	15.33	0.01	2.124	18.66	0.00	13.9	86.0	0.0	-3.60	0.79	0.75	0.75	—	23956	2662	15	0	623	0	0	logfile
✔	6RZB	10061	2022-05-12	2019-06-13	4.1	4.19	3.09	4.2	0.009	1.85	5.0	0.11	17.62	0.01	2.096	9.49	5.37	4.2	95.5	0.3	-2.81	0.68	0.84	—	4.1	0.004	0.75	0.0	0.04	14.83	0.00	1.882	18.54	0.00	4.0	96.0	0.0	-0.38	1.03	0.69	0.83	—	8001	1001	5	1	3	0	0	logfile
✔	6GSA	0051	2022-05-14	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.82	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.003	0.71	0.0	0.04	12.35	0.00	2.145	17.00	0.00	4.7	95.3	0.0	0.04	1.16	0.83	0.73	—	16272	1999	5	0	0	0	0	logfile
✔	5LMo	4074	2022-05-12	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.52	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.86	0.01	1.006	33.78	0.00	8.7	90.8	0.5	-1.87	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	5FYW	3378	2022-05-17	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	17.16	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.006	0.82	0.0	0.04	14.56	0.01	1.901	23.74	0.00	6.7	93.1	0.2	-0.30	2.89	0.83	0.82	—	41710	5176	30	94	11	0	0	logfile
✔	6R92	4766	2022-05-17	2019-04-02	4.8	6.24	—	5.4	0.009	1.11	6.0	0.09	23.81	0.01	2.054	4.43	0.36	5.0	94.7	0.4	-1.02	0.87	0.72	—	5.4	0.004	0.71	0.0	0.06	24.48	0.00	1.852	19.70	0.00	8.1	91.8	0.1	-1.82	1.40	0.88	0.74	—	40519	1974	12	290	0	0	19019	logfile

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