Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TD1	25820	2023-07-07	2021-12-30	3.08	3.31	—	3.3	0.003	0.43	0.0	0.04	11.99	0.00	2.168	2.81	0.28	1.9	98.1	0.0	-0.56	0.52	0.74	3.38	3.3	0.005	0.54	0.0	0.04	14.69	0.00	1.897	8.06	0.00	4.1	95.9	0.0	0.97	1.25	0.53	0.78	3.55	13492	906	5	0	1	0	6593	logfile
✔	6ZFo	11184	2023-07-09	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	6BF8	7092	2023-07-07	2017-10-26	4.2	4.69	4.96	7.4	0.007	1.21	0.0	0.06	11.02	0.01	2.252	7.53	0.00	3.8	96.2	0.0	-4.13	0.80	0.71	—	4.0	0.006	0.94	0.0	0.05	12.91	0.01	2.020	39.14	0.00	10.8	89.2	0.0	-2.19	2.36	0.82	0.75	—	15412	1888	2	0	0	0	0	logfile
✔	5oAF	3773	2023-07-09	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.004	0.72	0.0	0.04	12.91	0.00	2.119	16.11	0.00	4.4	95.5	0.1	-0.37	3.72	0.73	0.73	—	19748	2538	12	0	6	0	0	logfile
✔	8oNT	17000	2023-07-03	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.01	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.54	0.0	0.04	15.80	0.00	2.083	7.87	0.00	5.6	94.4	0.0	1.77	0.33	0.63	0.77	1.05	4316	558	3	0	1	1	0	logfile
✔	6ZD0	11172	2023-07-04	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	5YW8	6848	2023-07-20	2017-11-29	4.4	4.51	4.37	4.4	0.005	0.80	4.0	0.05	13.59	0.01	2.030	19.10	8.11	4.4	95.1	0.4	-2.46	0.64	0.70	—	4.3	0.003	0.72	0.0	0.04	12.84	0.00	2.124	13.56	0.00	4.2	95.7	0.1	0.67	3.92	0.65	0.75	—	50524	6520	16	0	8	0	0	logfile
✔	6T7D	10394	2023-07-04	2019-10-21	4.4	4.45	4.29	4.1	0.005	0.86	0.0	0.05	32.64	0.01	2.107	2.55	0.00	2.0	98.0	0.0	-2.34	0.86	0.77	—	4.1	0.004	0.65	0.0	0.03	32.45	0.00	2.138	11.97	0.00	2.8	97.2	0.0	3.16	0.72	0.87	0.82	—	8209	853	11	234	0	0	0	logfile
✔	7ZH6	14725	2023-07-03	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	16.13	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.003	0.73	0.0	0.04	16.88	0.00	2.217	14.09	0.00	6.0	94.0	0.0	0.95	1.12	0.54	0.74	1.24	3771	478	1	0	1	0	0	logfile
✔	6RQC	4980	2023-07-19	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.13	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.005	0.75	0.0	0.04	17.12	0.01	1.824	19.87	0.00	12.6	87.4	0.0	-2.74	3.23	0.80	0.70	—	105223	6174	23	176	15	0	51978	logfile
✔	7KY9	23072	2023-07-05	2020-12-07	4.05	4.67	—	4.5	0.004	1.14	0.0	0.05	13.33	0.00	2.206	15.79	0.00	8.3	91.7	0.0	-1.25	0.67	0.71	—	4.5	0.004	0.71	0.0	0.04	13.56	0.00	2.097	20.12	0.00	9.3	90.7	0.0	-1.08	0.49	0.68	0.74	—	10354	1275	7	0	14	0	0	logfile
✔	6LQi	0946	2023-07-12	2020-01-13	4.5	4.59	—	4.5	0.003	0.77	0.0	0.04	13.59	0.01	2.203	10.88	0.40	6.4	93.4	0.2	-3.01	0.70	0.75	—	4.5	0.003	0.75	0.0	0.04	13.02	0.00	2.196	10.64	0.00	7.5	92.4	0.1	-0.76	1.53	0.70	0.75	—	26934	3903	3	0	0	0	0	logfile
✔	7A96	11686	2023-07-14	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	6Fo0	4286	2023-07-05	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.54	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.56	0.00	1.904	10.30	0.00	5.8	94.2	0.0	-1.21	2.42	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	7DTW	30856	2023-07-05	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.74	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.233	7.27	0.00	8.1	91.9	0.0	-1.09	0.58	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	5JUY	8178	2023-07-12	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	7DTU	30854	2023-07-05	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.57	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.62	0.0	0.04	13.14	0.00	2.169	11.99	0.00	6.5	93.5	0.0	-0.70	1.10	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	7EU8	31309	2023-07-09	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	7.80	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.62	0.0	0.06	8.46	0.00	2.129	7.57	0.00	3.8	96.0	0.2	0.14	1.37	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	7DXK	30912	2023-07-10	2021-01-19	4.1	4.08	—	4.0	0.007	1.05	0.0	0.05	15.55	0.01	2.251	5.93	0.48	5.2	94.6	0.2	-3.75	0.79	0.81	—	4.0	0.003	0.75	0.0	0.04	14.45	0.00	2.185	11.53	0.00	4.9	95.1	0.0	0.82	3.11	0.79	0.79	—	20491	2621	2	0	0	0	0	logfile
✔	6S1N	10081	2023-07-09	2019-06-19	4.86	4.98	—	4.8	0.009	1.13	2.0	0.06	17.87	0.01	1.929	9.59	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	4.8	0.003	0.76	0.0	0.04	16.36	0.00	2.138	16.34	0.00	4.6	95.3	0.0	-0.83	3.65	0.83	0.73	—	19726	2399	11	50	3	0	0	logfile

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