Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6V85	21095	2022-07-04	2019-12-10	4.38	4.12	—	3.9	0.006	0.89	2.0	0.05	14.46	0.01	2.077	22.33	0.45	13.5	86.0	0.4	-3.59	0.77	0.71	—	3.9	0.003	0.76	0.0	0.04	14.12	0.01	2.008	15.62	0.00	9.8	90.1	0.0	-0.59	1.75	0.79	0.74	—	17878	2240	7	0	2	0	0	logfile
✔	5oAF	3773	2022-07-04	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.46	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.70	0.0	0.04	12.90	0.00	2.107	13.78	0.00	4.1	95.8	0.0	-0.36	3.56	0.72	0.72	—	19748	2538	12	0	6	0	0	logfile
✔	6QLD	4579	2022-07-06	2019-01-31	4.15	4.29	—	4.1	0.004	0.86	1.0	0.05	21.51	0.01	2.289	5.07	0.25	5.1	94.8	0.2	-3.52	0.83	0.76	—	4.1	0.003	0.64	0.0	0.04	21.25	0.00	2.155	12.14	0.00	5.4	94.6	0.0	1.06	0.74	0.83	0.75	—	29086	3157	22	248	0	0	0	logfile
✔	6Ji1	9832	2022-07-04	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.50	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.003	0.77	0.0	0.04	12.99	0.01	2.065	10.76	0.00	7.6	91.8	0.7	-1.15	0.86	0.57	0.70	—	13992	1848	4	0	0	0	0	logfile
✔	6DM1	7961	2022-07-06	2018-06-04	4.2	4.55	—	4.4	0.013	1.19	0.0	0.10	10.33	0.01	2.171	4.38	0.60	8.4	91.2	0.4	-3.78	0.87	0.79	—	4.4	0.003	0.65	0.0	0.04	11.78	0.00	2.085	10.96	0.00	6.6	93.4	0.1	-0.26	1.06	0.89	0.83	—	31097	3941	8	0	5	0	0	logfile
✔	6E9Y	9020	2022-07-03	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.06	0.00	2.036	9.37	0.00	1.4	98.6	0.0	2.12	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6QJP	4565	2022-07-02	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	5WEo	8823	2022-07-06	2017-07-10	4.2	4.35	—	4.2	0.009	1.05	0.0	0.06	9.88	0.01	2.188	8.92	0.24	7.3	92.7	0.1	-3.69	0.80	0.72	—	4.2	0.002	0.60	0.0	0.04	11.37	0.00	2.083	8.14	0.00	5.0	95.0	0.0	0.15	1.00	0.87	0.83	—	31168	3954	8	0	4	0	0	logfile
✔	5FJ9	3179	2022-07-07	2015-10-06	4.6	4.67	—	4.6	0.004	1.21	0.0	0.05	12.45	0.00	1.842	13.11	4.04	16.0	82.8	1.1	-4.61	0.80	0.72	—	4.6	0.004	0.90	0.0	0.05	13.51	0.01	1.849	18.37	0.00	13.0	85.9	1.1	-2.32	2.54	0.83	0.78	—	38680	4845	22	0	41	0	0	logfile
✔	6NAV	0397	2022-07-04	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.67	0.00	2.145	7.83	0.00	6.1	93.9	0.0	-0.50	1.54	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	6Fo0	4286	2022-07-03	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.64	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.004	0.61	0.0	0.04	12.47	0.00	1.919	11.06	0.00	7.1	92.9	0.0	-1.14	2.41	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	5YW8	6848	2022-07-08	2017-11-29	4.4	4.51	4.37	4.4	0.005	0.80	4.0	0.05	13.59	0.01	2.030	19.14	8.11	4.4	95.1	0.4	-2.46	0.64	0.70	—	4.3	0.003	0.73	0.0	0.04	12.82	0.00	2.164	13.88	0.00	4.5	95.5	0.1	0.64	3.93	0.65	0.75	—	50524	6520	16	0	8	0	0	logfile
✔	6DM0	7960	2022-07-06	2018-06-04	4.4	4.97	—	4.8	0.013	1.10	0.0	0.10	10.16	0.01	2.183	4.13	0.30	8.4	91.2	0.4	-3.36	0.85	0.78	—	4.8	0.004	0.71	0.0	0.04	12.15	0.00	2.043	15.63	0.00	7.7	92.3	0.1	-0.94	1.09	0.87	0.82	—	31095	3942	8	0	5	0	0	logfile
✔	6RQC	4980	2022-07-07	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.16	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.004	0.70	0.0	0.04	17.01	0.00	1.841	16.11	0.00	10.9	89.1	0.0	-2.26	3.24	0.80	0.70	—	105223	6174	23	176	15	0	51978	logfile
✔	5WP9	8874	2022-07-04	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.24	0.0	0.05	10.03	0.02	1.918	2.77	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	4.8	0.003	0.66	0.0	0.04	12.33	0.01	1.866	14.52	0.00	4.5	95.2	0.3	0.15	1.85	0.50	0.69	—	117048	7352	24	0	16	0	59080	logfile
✔	5YKE	6831	2022-07-06	2017-10-14	4.11	4.22	3.92	4.1	0.005	0.81	0.0	0.05	13.28	0.01	2.246	11.63	7.60	3.7	95.9	0.4	-1.76	0.66	0.76	—	4.1	0.004	0.72	0.0	0.04	12.83	0.00	2.231	10.78	0.00	2.7	97.2	0.1	1.72	1.03	0.68	0.79	—	30636	3912	12	0	4	0	0	logfile
✔	6BF8	7092	2022-07-04	2017-10-26	4.2	4.69	4.96	7.4	0.007	1.21	0.0	0.06	11.02	0.01	2.252	7.63	0.00	3.8	96.2	0.0	-4.13	0.80	0.71	—	4.0	0.003	0.75	0.0	0.04	12.80	0.00	2.117	24.22	0.00	8.0	92.0	0.0	-1.42	2.34	0.82	0.75	—	15412	1888	2	0	0	0	0	logfile
✔	6U9F	20696	2022-07-04	2019-09-08	4.35	4.41	—	4.3	0.009	1.10	0.0	0.06	9.47	0.01	2.193	7.59	0.15	13.4	86.6	0.0	-4.71	0.78	0.78	—	4.3	0.003	0.67	0.0	0.05	11.85	0.00	2.089	12.84	0.00	8.5	91.5	0.0	-1.93	0.87	0.79	0.79	—	19179	2550	6	0	0	0	0	logfile
✔	6ND1	0440	2022-07-03	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.003	0.70	0.0	0.04	14.66	0.00	2.255	8.17	0.00	3.7	96.3	0.0	0.54	0.70	0.59	0.80	—	9186	1179	6	0	0	0	0	logfile
✔	3JD6	6425	2022-07-07	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	32.0	0.12	14.71	0.02	1.693	5.43	0.00	13.3	86.1	0.6	-3.14	0.60	0.42	—	4.4	0.004	0.72	0.0	0.04	13.90	0.00	1.922	12.20	0.00	15.1	84.9	0.0	-2.30	2.43	0.85	0.80	—	43088	2672	16	0	0	0	21216	logfile

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