Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NYX	12657	2022-12-14	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.26	0.00	1.844	11.25	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.3	0.006	0.71	0.0	0.04	17.13	0.01	0.691	27.95	0.00	6.7	93.3	0.0	-0.40	1.56	0.90	0.84	—	70784	4186	18	104	6	0	34688	logfile
✔	7AFL	11769	2022-12-18	2020-09-19	4.2	5.13	4.56	3.0	0.010	1.08	6.0	0.06	17.44	0.01	1.852	43.80	0.00	6.0	94.0	0.0	-1.84	0.89	0.87	—	2.8	0.006	0.75	0.0	0.04	16.54	0.01	1.824	42.74	0.00	6.4	93.6	0.0	-1.43	0.72	0.89	0.88	—	34322	1487	15	1054	25	0	0	logfile
✔	7L8W	23238	2022-12-13	2021-01-01	4.1	4.21	3.98	4.1	0.020	1.68	0.0	0.13	9.89	0.02	2.347	1.38	0.00	1.7	98.3	0.0	1.14	0.72	0.82	—	4.1	0.003	0.69	0.0	0.05	13.28	0.00	2.155	10.53	0.00	2.4	97.4	0.2	-0.06	1.39	0.73	0.82	—	15803	1714	22	0	298	0	0	logfile
✔	7ABK	11698	2022-12-11	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.66	0.0	0.03	19.91	0.00	2.304	7.87	0.00	2.1	97.9	0.0	5.18	1.55	0.28	0.85	1.35	1574	196	1	0	0	0	0	logfile
✔	7MR2	23954	2022-12-13	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.86	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.55	0.0	0.04	14.98	0.00	2.153	10.06	0.00	4.6	95.4	0.0	0.28	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7R7T	24304	2022-12-19	2021-06-25	4.5	4.85	—	4.6	0.004	1.02	0.0	0.06	15.88	0.01	2.286	6.32	0.00	7.8	92.2	0.0	-3.13	0.81	0.73	—	4.6	0.004	0.83	0.0	0.05	15.09	0.01	2.078	24.59	0.00	9.3	90.7	0.0	-1.84	0.94	0.82	0.76	—	35351	4470	13	0	12	0	0	logfile
✔	6XoS	22278	2022-12-11	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	3.14	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.003	0.75	0.0	0.04	14.49	0.00	2.152	9.23	0.00	2.1	97.9	0.0	1.57	0.98	0.89	0.85	1.92	7704	966	1	0	0	0	0	logfile
✔	7M9C	23723	2022-12-16	2021-03-30	4.2	4.61	3.85	4.2	0.003	0.64	4.0	0.04	14.80	0.00	1.350	9.52	0.10	2.6	97.3	0.1	0.09	0.78	0.67	—	4.3	0.003	0.76	0.0	0.05	15.33	0.00	2.088	15.34	0.00	2.6	97.3	0.1	0.74	6.10	0.83	0.83	—	30517	3598	26	66	10	0	0	logfile
✔	7EA8	31040	2022-12-13	2021-03-06	3.1	3.23	—	3.2	0.004	0.71	0.0	0.04	24.03	0.01	2.306	1.94	0.00	3.7	96.3	0.0	-3.23	0.69	0.78	2.67	3.2	0.005	0.60	0.0	0.04	25.92	0.00	2.189	5.15	0.00	5.1	94.9	0.0	-0.12	0.62	0.74	0.86	2.08	12865	984	12	244	4	0	0	logfile
✔	7BZY	30263	2022-12-11	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	7EoQ	31227	2022-12-15	2021-04-22	4.1	4.43	—	4.1	0.002	0.46	0.0	0.04	9.71	0.00	2.195	7.83	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.004	0.66	0.0	0.04	11.25	0.00	2.124	17.22	0.00	7.9	92.1	0.0	-0.78	1.25	0.89	0.80	—	24742	3144	8	0	10	0	0	logfile
✔	7EU7	31308	2022-12-14	2021-05-16	3.5	3.93	—	3.5	0.003	0.62	0.0	0.05	13.10	0.01	2.172	16.47	2.99	5.0	94.8	0.1	-0.02	0.83	0.83	2.68	3.4	0.002	0.53	0.0	0.04	13.49	0.00	2.183	7.75	0.00	4.7	95.3	0.0	0.13	0.30	0.84	0.85	2.39	21773	3134	8	0	25	0	0	logfile
✔	7N9A	24253	2022-12-11	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.70	0.0	0.04	15.37	0.00	2.164	15.13	0.00	3.2	96.8	0.0	-0.99	0.55	0.73	0.70	2.49	2431	312	2	0	0	0	0	logfile
✔	7EoU	31231	2022-12-15	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.25	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.003	0.62	0.0	0.04	11.30	0.00	2.066	15.92	0.00	6.3	93.7	0.1	-0.32	1.65	0.89	0.80	—	24593	3084	8	0	19	0	0	logfile
✔	7NT6	12584	2022-12-15	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.2	0.003	0.66	0.0	0.05	8.24	0.00	2.143	3.83	0.00	6.3	93.7	0.0	2.06	0.62	0.71	0.72	—	24128	5582	17	90	0	0	0	logfile
✔	6XLD	22240	2022-12-12	2020-06-28	3.66	3.78	—	3.7	0.003	0.51	0.0	0.04	9.94	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.002	0.61	0.0	0.04	14.50	0.00	1.951	10.18	0.00	3.1	96.9	0.0	-0.23	1.41	0.80	0.81	2.33	10992	1349	5	0	4	0	0	logfile
✔	7AFK	11768	2022-12-14	2020-09-19	4.9	5.45	4.73	3.0	0.008	0.88	1.0	0.05	18.40	0.02	1.519	42.50	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.9	0.006	0.83	0.0	0.04	18.01	0.01	1.817	46.34	0.00	7.5	92.5	0.0	-1.52	0.78	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	7EU8	31309	2022-12-14	2021-05-16	4.07	4.11	—	3.6	0.002	0.41	0.0	0.04	8.07	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.003	0.58	0.0	0.04	8.85	0.00	2.112	8.24	0.00	4.3	95.5	0.2	-0.27	1.40	0.78	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	7AA5	11690	2022-12-14	2020-09-03	4.18	4.64	—	4.4	0.006	0.92	2.0	0.04	14.67	0.00	2.119	21.52	2.04	15.1	84.7	0.2	-4.78	0.69	0.80	—	4.4	0.002	0.53	0.0	0.03	13.33	0.00	1.967	63.92	0.00	11.6	88.2	0.2	-0.23	1.11	0.68	0.79	—	19705	2448	5	0	1	0	8	logfile
✔	7oQC	13029	2022-12-19	2021-06-03	4.1	4.04	4.09	4.0	0.004	0.80	0.0	0.05	13.70	0.05	2.245	4.49	0.58	4.5	95.4	0.1	-3.86	0.57	0.63	—	4.0	0.003	1.07	0.0	0.04	14.98	0.01	2.085	13.96	0.00	5.0	94.9	0.1	0.42	0.96	0.60	0.69	—	35050	3078	18	568	53	0	0	logfile

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