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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oGD | 20053 | 2022-05-16 | 2019-04-02 | 4.4 | 4.84 | — | 4.6 | 0.014 | 1.97 | 109.0 | 0.10 | 15.21 | 0.02 | 1.338 | 1.47 | 1.94 | 9.9 | 88.5 | 1.7 | -3.34 | 0.59 | 0.67 | — | 4.6 | 0.003 | 0.81 | 0.0 | 0.04 | 14.51 | 0.00 | 2.052 | 14.11 | 0.00 | 8.5 | 91.2 | 0.3 | -1.45 | 1.20 | 0.63 | 0.75 | — | 94125 | 11820 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EF1 | 9043 | 2022-05-15 | 2018-08-15 | 4.73 | 3.61 | — | 4.2 | 0.009 | 0.99 | 0.0 | 0.05 | 11.78 | 0.01 | 2.040 | 7.30 | 0.00 | 14.5 | 85.5 | 0.0 | -5.20 | 0.59 | 0.78 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 12.76 | 0.00 | 2.098 | 12.31 | 0.00 | 7.8 | 92.2 | 0.0 | -2.20 | 1.33 | 0.60 | 0.80 | — | 23658 | 3294 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 5WEL | 8820 | 2022-05-15 | 2017-07-10 | 4.4 | 4.52 | — | 4.4 | 0.020 | 0.96 | 0.0 | 0.06 | 12.16 | 0.01 | 2.206 | 8.23 | 0.61 | 6.5 | 93.4 | 0.1 | -4.07 | 0.69 | 0.68 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 13.09 | 0.00 | 2.103 | 18.91 | 0.00 | 5.4 | 94.6 | 0.0 | -0.68 | 1.15 | 0.75 | 0.78 | — | 27638 | 3484 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6FQ8 | 4299 | 2022-05-13 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.99 | 0.01 | 2.252 | 8.50 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | 4.9 | 0.005 | 0.74 | 0.0 | 0.04 | 30.16 | 0.01 | 1.999 | 26.10 | 0.00 | 3.7 | 96.3 | 0.0 | 0.60 | 0.92 | 0.86 | 0.76 | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6oiF | 20076 | 2022-05-13 | 2019-04-09 | 4.4 | 4.70 | — | 4.6 | 0.008 | 1.21 | 0.0 | 0.05 | 9.73 | 0.01 | 1.596 | 6.18 | 0.00 | 11.4 | 88.6 | 0.0 | -4.69 | 0.65 | 0.66 | — | 4.6 | 0.006 | 0.73 | 0.0 | 0.05 | 12.19 | 0.00 | 1.803 | 28.16 | 0.00 | 10.2 | 89.8 | 0.0 | -2.31 | 1.72 | 0.69 | 0.78 | — | 115025 | 7050 | 49 | 0 | 25 | 0 | 56750 | logfile |
✔ | 6MEC | 9106 | 2022-05-14 | 2018-09-06 | 3.6 | 3.69 | — | 3.6 | 0.010 | 1.21 | 0.0 | 0.06 | 18.24 | 0.01 | 1.659 | 15.45 | 0.00 | 13.7 | 86.3 | 0.0 | -4.93 | 0.86 | 0.80 | 2.53 | 3.6 | 0.007 | 0.87 | 0.0 | 0.03 | 17.73 | 0.00 | 1.934 | 16.07 | 0.00 | 8.6 | 91.4 | 0.0 | -1.43 | 0.93 | 0.86 | 0.79 | 1.82 | 21276 | 414 | 5 | 832 | 52 | 0 | 0 | logfile |
✔ | 6S5T | 10100 | 2022-05-12 | 2019-07-02 | 4.15 | 4.28 | 4.17 | 4.2 | 0.007 | 1.48 | 3.0 | 0.09 | 17.31 | 0.00 | 2.450 | 5.23 | 3.93 | 7.1 | 92.4 | 0.6 | -4.05 | 0.75 | 0.84 | — | 4.2 | 0.006 | 0.77 | 0.0 | 0.05 | 15.14 | 0.00 | 2.199 | 11.19 | 0.00 | 6.1 | 93.9 | 0.0 | -0.57 | 1.49 | 0.76 | 0.82 | — | 6958 | 896 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KLB | 0705 | 2022-05-14 | 2019-07-30 | 4.1 | 4.14 | — | 4.0 | 0.004 | 0.90 | 1.0 | 0.05 | 11.32 | 0.01 | 2.015 | 8.05 | 0.31 | 9.0 | 90.8 | 0.2 | -5.01 | 0.66 | 0.55 | — | 4.0 | 0.012 | 1.03 | 2.0 | 0.05 | 13.61 | 0.01 | 1.653 | 25.39 | 0.00 | 12.5 | 87.4 | 0.0 | -2.38 | 2.91 | 0.69 | 0.61 | — | 21384 | 2467 | 11 | 50 | 4 | 11 | 0 | logfile |
✔ | 5Z3U | 6882 | 2022-05-14 | 2018-01-08 | 4.31 | 4.01 | — | 3.9 | 0.011 | 0.98 | 0.0 | 0.05 | 24.03 | 0.01 | 2.030 | 19.01 | 0.09 | 9.0 | 91.0 | 0.0 | -5.01 | 0.77 | 0.81 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 24.49 | 0.00 | 2.052 | 11.49 | 0.00 | 5.5 | 94.5 | 0.0 | 0.31 | 0.80 | 0.75 | 0.76 | — | 16766 | 1341 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2022-05-13 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 9.02 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.05 | 12.81 | 0.00 | 2.114 | 14.96 | 0.00 | 13.7 | 86.3 | 0.0 | -2.66 | 1.01 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 5YKF | 6832 | 2022-05-18 | 2017-10-14 | 4.33 | 4.45 | 4.32 | 4.3 | 0.006 | 0.81 | 4.0 | 0.05 | 13.65 | 0.01 | 2.030 | 15.33 | 8.16 | 4.4 | 95.1 | 0.4 | -2.48 | 0.78 | 0.77 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.97 | 0.00 | 2.161 | 14.75 | 0.00 | 4.9 | 95.0 | 0.1 | 0.47 | 3.12 | 0.79 | 0.80 | — | 50988 | 6536 | 15 | 0 | 12 | 0 | 0 | logfile |
✔ | 5ANB | 3146 | 2022-05-18 | 2015-09-06 | 4.1 | 4.11 | — | 4.1 | 0.008 | 1.31 | 6.0 | 0.10 | 18.54 | 0.01 | 1.245 | 5.13 | 4.33 | 13.0 | 83.9 | 3.1 | -4.17 | 0.41 | 0.75 | — | 4.1 | 0.007 | 0.93 | 0.0 | 0.04 | 17.15 | 0.01 | 1.065 | 22.25 | 0.00 | 13.2 | 86.1 | 0.8 | -3.51 | 0.83 | 0.39 | 0.71 | — | 48493 | 3025 | 12 | 1162 | 0 | 0 | 0 | logfile |
✔ | 5YWC | 6852 | 2022-05-18 | 2017-11-29 | 4.3 | 4.48 | 4.24 | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 14.47 | 0.00 | 2.030 | 14.78 | 7.97 | 4.4 | 95.3 | 0.4 | -1.76 | 0.66 | 0.75 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.04 | 12.95 | 0.00 | 1.943 | 15.75 | 0.00 | 4.3 | 95.7 | 0.1 | 0.97 | 3.33 | 0.68 | 0.79 | — | 51108 | 6588 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 6iZR | 9757 | 2022-05-16 | 2018-12-20 | 4.7 | 4.86 | — | 4.7 | 0.004 | 0.90 | 0.0 | 0.05 | 11.50 | 0.01 | 2.086 | 6.64 | 0.26 | 6.9 | 93.1 | 0.0 | -4.07 | 0.68 | 0.78 | — | 4.7 | 0.003 | 0.82 | 0.0 | 0.05 | 13.46 | 0.00 | 1.755 | 22.90 | 0.00 | 7.0 | 93.0 | 0.0 | -0.28 | 2.05 | 0.66 | 0.71 | — | 84360 | 10470 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 3JD6 | 6425 | 2022-05-17 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 32.0 | 0.12 | 14.71 | 0.02 | 1.693 | 5.43 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.60 | 0.42 | — | 4.4 | 0.004 | 0.72 | 0.0 | 0.04 | 13.90 | 0.00 | 1.922 | 12.20 | 0.00 | 15.1 | 84.9 | 0.0 | -2.30 | 2.43 | 0.85 | 0.80 | — | 43088 | 2672 | 16 | 0 | 0 | 0 | 21216 | logfile |
✔ | 6SEE | 10153 | 2022-05-13 | 2019-07-29 | 4.2 | 4.47 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.05 | 27.63 | 0.01 | 2.252 | 4.46 | 0.00 | 3.0 | 97.0 | 0.0 | -1.74 | 0.87 | 0.83 | — | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 28.07 | 0.00 | 2.034 | 17.94 | 0.00 | 3.1 | 96.9 | 0.0 | 0.57 | 0.73 | 0.87 | 0.83 | — | 11949 | 756 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6VPP | 21315 | 2022-05-13 | 2020-02-04 | 4.4 | 5.69 | — | 5.4 | 0.005 | 0.96 | 0.0 | 0.05 | 15.79 | 0.01 | 2.087 | 11.75 | 0.30 | 5.2 | 94.7 | 0.1 | -4.45 | 0.71 | 0.79 | — | 5.4 | 0.003 | 0.73 | 0.0 | 0.04 | 14.68 | 0.01 | 1.887 | 22.60 | 0.00 | 5.3 | 94.7 | 0.0 | -0.94 | 1.72 | 0.70 | 0.79 | — | 9156 | 1164 | 5 | 1 | 2 | 0 | 0 | logfile |
✔ | 6J30 | 9773 | 2022-05-12 | 2019-01-03 | 4.5 | 4.74 | — | 4.6 | 0.002 | 0.44 | 0.0 | 0.04 | 7.35 | 0.00 | 2.093 | 8.68 | 0.07 | 6.4 | 93.4 | 0.3 | -3.38 | 0.86 | 0.72 | — | 4.5 | 0.003 | 0.73 | 0.0 | 0.04 | 12.16 | 0.00 | 2.060 | 19.48 | 0.00 | 5.3 | 94.5 | 0.2 | -0.65 | 1.90 | 0.89 | 0.77 | — | 106227 | 13504 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-05-13 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 88.10 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.007 | 1.33 | 0.0 | 0.05 | 16.09 | 0.01 | 1.037 | 31.44 | 0.00 | 20.2 | 75.6 | 4.2 | -4.47 | 1.32 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5V6P | 8637 | 2022-05-13 | 2017-03-17 | 4.1 | 4.04 | — | 4.1 | 0.015 | 1.37 | 0.0 | 0.08 | 9.65 | 0.01 | 2.463 | 1.41 | 0.00 | 2.6 | 97.0 | 0.4 | 0.18 | 0.40 | 0.58 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.03 | 12.71 | 0.00 | 1.883 | 12.84 | 0.00 | 2.4 | 97.4 | 0.2 | 3.20 | 1.62 | 0.41 | 0.66 | — | 9194 | 540 | 2 | 0 | 0 | 0 | 4676 | logfile |