Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UGF	20763	2021-08-08	2019-09-26	4.2	4.51	—	4.2	0.008	1.11	0.0	0.05	13.93	0.01	2.046	4.71	0.30	6.0	93.9	0.1	-4.55	0.80	0.72	—	4.3	0.002	0.59	0.0	0.04	13.31	0.00	2.051	7.18	0.00	4.1	95.9	0.0	-0.23	0.68	0.84	0.81	—	13874	1862	12	0	9	0	0	logfile
✔	6Q2N	20575	2021-08-08	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	10.94	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.005	0.88	0.0	0.05	11.78	0.01	2.085	19.31	0.00	10.1	89.8	0.1	-2.27	1.50	0.61	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	5YUD	6845	2021-08-08	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.31	0.01	1.301	54.09	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.003	0.86	0.0	0.04	13.53	0.00	2.180	19.35	0.00	10.9	88.5	0.5	-2.09	1.79	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✔	6N2P	9332	2021-08-08	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.60	0.0	0.04	11.00	0.00	2.186	6.18	0.00	7.3	92.7	0.0	0.72	1.42	0.60	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6QX8	4663	2021-08-11	2019-03-07	4.07	4.05	—	4.0	0.008	0.94	0.0	0.05	15.12	0.01	1.805	11.14	0.14	8.0	91.9	0.2	-3.75	0.74	0.73	—	4.0	0.003	0.65	0.0	0.04	14.67	0.00	1.913	15.19	0.00	7.4	92.6	0.0	-1.20	1.33	0.74	0.72	—	38594	2384	8	24	0	0	19050	logfile
✔	3JC2	3245	2021-08-07	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.028	2.38	2.0	0.05	17.84	0.00	1.835	21.05	0.00	5.3	94.0	0.6	-1.16	3.32	0.24	0.53	1.43	3911	482	4	0	32	0	0	logfile
✔	5ZBG	6911	2021-08-09	2018-02-11	4.36	4.83	—	4.5	0.005	0.70	0.0	0.04	13.89	0.00	2.258	7.44	4.79	7.0	92.7	0.3	-2.22	0.69	0.81	—	4.5	0.003	0.68	0.0	0.04	12.77	0.00	2.173	12.93	0.00	5.5	94.5	0.0	1.15	1.07	0.70	0.83	—	21260	2680	4	0	0	0	0	logfile
✔	6J50	0675	2021-08-11	2019-01-10	4.7	5.34	—	3.4	0.009	1.21	3.0	0.07	19.05	0.01	1.789	9.41	0.77	4.3	95.0	0.7	-1.67	0.74	0.56	—	3.1	0.005	0.74	0.0	0.04	19.64	0.00	1.992	23.00	0.00	5.3	94.6	0.1	0.21	2.42	0.85	0.78	—	47422	5061	34	349	10	0	0	logfile
✔	6FN4	4282	2021-08-08	2018-02-02	4.14	4.24	—	4.2	0.005	0.81	0.0	0.05	9.96	0.01	2.096	8.79	0.00	7.5	91.3	1.2	-2.94	0.68	0.74	—	4.2	0.003	0.65	0.0	0.04	12.44	0.00	2.191	8.55	0.00	3.9	96.0	0.1	0.23	1.72	0.71	0.76	—	12702	1626	4	0	4	0	0	logfile
✔	6J4X	0672	2021-08-11	2019-01-10	4.3	4.78	—	3.1	0.009	1.22	3.0	0.07	17.53	0.01	1.803	6.92	0.74	4.3	95.1	0.7	-1.67	0.75	0.60	—	3.0	0.003	0.65	0.0	0.04	17.94	0.00	2.049	14.44	0.00	3.7	96.2	0.1	0.78	2.37	0.84	0.78	—	46185	5122	34	265	11	0	0	logfile
✔	6DBX	7853	2021-08-08	2018-05-03	4.2	4.39	—	4.2	0.005	0.86	0.0	0.05	20.21	0.00	2.076	20.23	0.00	11.9	88.0	0.2	-4.68	0.81	0.80	—	4.2	0.004	0.74	0.0	0.04	17.98	0.00	2.057	17.71	0.00	6.4	93.6	0.0	-0.95	1.02	0.82	0.83	—	17436	1933	8	100	6	0	0	logfile
✔	6DMo	7964	2021-08-07	2018-06-05	4.1	4.16	—	4.1	0.008	1.27	0.0	0.06	13.66	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.85	0.0	0.05	13.40	0.00	2.073	14.31	0.00	9.9	90.1	0.0	-0.61	1.86	0.59	0.73	—	7853	982	1	0	7	0	0	logfile
✔	5V4S	8633	2021-08-08	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	2.99	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.61	0.0	0.04	10.49	0.00	2.215	15.41	0.00	2.9	97.1	0.0	3.19	1.02	0.63	0.76	—	10756	1548	4	0	0	0	0	logfile
✔	6UPK	20840	2021-08-08	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.95	0.0	0.05	20.35	0.01	1.570	20.32	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.64	0.0	0.04	22.39	0.00	1.972	26.23	0.00	5.1	94.9	0.0	-1.03	2.98	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✔	5X5F	6707	2021-08-09	2017-02-15	4.2	4.29	—	4.2	0.011	1.72	6.0	0.08	14.74	0.01	1.433	32.45	5.99	13.0	85.5	1.4	-3.79	0.66	0.57	—	4.2	0.003	0.99	0.0	0.05	12.72	0.01	2.099	19.27	0.00	12.3	87.5	0.2	-2.28	1.23	0.71	0.70	—	26422	3423	3	0	0	0	0	logfile
✔	6oRN	20175	2021-08-09	2019-04-30	4.05	4.51	4.01	4.4	0.007	1.05	1.0	0.06	10.66	0.01	2.257	4.29	0.62	7.4	92.4	0.2	-4.42	0.66	0.85	—	4.4	0.003	0.69	0.0	0.05	11.80	0.00	2.210	7.94	0.00	6.5	93.5	0.0	-1.75	0.65	0.66	0.85	—	20338	2418	18	0	101	0	0	logfile
✔	6QPi	4614	2021-08-07	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.52	0.0	0.04	5.17	0.00	2.483	1.49	0.00	2.8	97.2	0.0	0.96	1.21	0.42	0.63	—	2288	462	2	0	0	0	0	logfile
✔	6B19	7031	2021-08-07	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	15.00	0.00	19.6	80.3	0.1	-5.74	0.74	0.64	—	4.4	0.003	0.83	0.0	0.04	13.21	0.00	1.948	28.94	0.00	25.0	75.0	0.0	-5.22	2.19	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	6K72	9841	2021-08-10	2019-06-05	4.6	4.68	—	4.6	0.006	1.32	0.0	0.07	12.85	0.01	2.168	10.56	1.37	14.0	85.9	0.1	-5.39	0.74	0.72	—	4.6	0.003	0.84	0.0	0.05	13.09	0.00	2.125	18.03	0.00	12.0	88.0	0.0	-2.90	0.80	0.74	0.72	—	32731	4264	14	0	0	0	0	logfile
✔	6oo2	20142	2021-08-08	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	6.87	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.003	0.68	0.0	0.04	13.15	0.00	0.967	12.84	0.00	4.4	95.6	0.0	1.63	1.13	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile

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