Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oGD	20053	2022-05-16	2019-04-02	4.4	4.84	—	4.6	0.014	1.97	109.0	0.10	15.21	0.02	1.338	1.47	1.94	9.9	88.5	1.7	-3.34	0.59	0.67	—	4.6	0.003	0.81	0.0	0.04	14.51	0.00	2.052	14.11	0.00	8.5	91.2	0.3	-1.45	1.20	0.63	0.75	—	94125	11820	15	0	0	0	0	logfile
✔	6EF1	9043	2022-05-15	2018-08-15	4.73	3.61	—	4.2	0.009	0.99	0.0	0.05	11.78	0.01	2.040	7.30	0.00	14.5	85.5	0.0	-5.20	0.59	0.78	—	4.2	0.004	0.76	0.0	0.04	12.76	0.00	2.098	12.31	0.00	7.8	92.2	0.0	-2.20	1.33	0.60	0.80	—	23658	3294	20	0	6	0	0	logfile
✔	5WEL	8820	2022-05-15	2017-07-10	4.4	4.52	—	4.4	0.020	0.96	0.0	0.06	12.16	0.01	2.206	8.23	0.61	6.5	93.4	0.1	-4.07	0.69	0.68	—	4.4	0.003	0.72	0.0	0.04	13.09	0.00	2.103	18.91	0.00	5.4	94.6	0.0	-0.68	1.15	0.75	0.78	—	27638	3484	8	0	6	0	0	logfile
✔	6FQ8	4299	2022-05-13	2018-02-13	4.8	6.62	—	4.8	0.008	1.16	0.0	0.07	26.99	0.01	2.252	8.50	0.16	2.3	97.7	0.0	-0.86	0.84	0.71	—	4.9	0.005	0.74	0.0	0.04	30.16	0.01	1.999	26.10	0.00	3.7	96.3	0.0	0.60	0.92	0.86	0.76	—	11913	744	10	294	0	0	0	logfile
✔	6oiF	20076	2022-05-13	2019-04-09	4.4	4.70	—	4.6	0.008	1.21	0.0	0.05	9.73	0.01	1.596	6.18	0.00	11.4	88.6	0.0	-4.69	0.65	0.66	—	4.6	0.006	0.73	0.0	0.05	12.19	0.00	1.803	28.16	0.00	10.2	89.8	0.0	-2.31	1.72	0.69	0.78	—	115025	7050	49	0	25	0	56750	logfile
✔	6MEC	9106	2022-05-14	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.007	0.87	0.0	0.03	17.73	0.00	1.934	16.07	0.00	8.6	91.4	0.0	-1.43	0.93	0.86	0.79	1.82	21276	414	5	832	52	0	0	logfile
✔	6S5T	10100	2022-05-12	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.31	0.00	2.450	5.23	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.006	0.77	0.0	0.05	15.14	0.00	2.199	11.19	0.00	6.1	93.9	0.0	-0.57	1.49	0.76	0.82	—	6958	896	3	0	1	0	0	logfile
✔	6KLB	0705	2022-05-14	2019-07-30	4.1	4.14	—	4.0	0.004	0.90	1.0	0.05	11.32	0.01	2.015	8.05	0.31	9.0	90.8	0.2	-5.01	0.66	0.55	—	4.0	0.012	1.03	2.0	0.05	13.61	0.01	1.653	25.39	0.00	12.5	87.4	0.0	-2.38	2.91	0.69	0.61	—	21384	2467	11	50	4	11	0	logfile
✔	5Z3U	6882	2022-05-14	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	19.01	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.003	0.63	0.0	0.04	24.49	0.00	2.052	11.49	0.00	5.5	94.5	0.0	0.31	0.80	0.75	0.76	—	16766	1341	12	292	3	0	0	logfile
✔	6HV8	0287	2022-05-13	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	9.02	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.81	0.00	2.114	14.96	0.00	13.7	86.3	0.0	-2.66	1.01	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	5YKF	6832	2022-05-18	2017-10-14	4.33	4.45	4.32	4.3	0.006	0.81	4.0	0.05	13.65	0.01	2.030	15.33	8.16	4.4	95.1	0.4	-2.48	0.78	0.77	—	4.3	0.004	0.71	0.0	0.04	12.97	0.00	2.161	14.75	0.00	4.9	95.0	0.1	0.47	3.12	0.79	0.80	—	50988	6536	15	0	12	0	0	logfile
✔	5ANB	3146	2022-05-18	2015-09-06	4.1	4.11	—	4.1	0.008	1.31	6.0	0.10	18.54	0.01	1.245	5.13	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.1	0.007	0.93	0.0	0.04	17.15	0.01	1.065	22.25	0.00	13.2	86.1	0.8	-3.51	0.83	0.39	0.71	—	48493	3025	12	1162	0	0	0	logfile
✔	5YWC	6852	2022-05-18	2017-11-29	4.3	4.48	4.24	4.3	0.004	0.80	0.0	0.04	14.47	0.00	2.030	14.78	7.97	4.4	95.3	0.4	-1.76	0.66	0.75	—	4.3	0.004	0.75	0.0	0.04	12.95	0.00	1.943	15.75	0.00	4.3	95.7	0.1	0.97	3.33	0.68	0.79	—	51108	6588	16	0	20	0	0	logfile
✔	6iZR	9757	2022-05-16	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.64	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.003	0.82	0.0	0.05	13.46	0.00	1.755	22.90	0.00	7.0	93.0	0.0	-0.28	2.05	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✔	3JD6	6425	2022-05-17	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	32.0	0.12	14.71	0.02	1.693	5.43	0.00	13.3	86.1	0.6	-3.14	0.60	0.42	—	4.4	0.004	0.72	0.0	0.04	13.90	0.00	1.922	12.20	0.00	15.1	84.9	0.0	-2.30	2.43	0.85	0.80	—	43088	2672	16	0	0	0	21216	logfile
✔	6SEE	10153	2022-05-13	2019-07-29	4.2	4.47	—	4.1	0.008	0.94	0.0	0.05	27.63	0.01	2.252	4.46	0.00	3.0	97.0	0.0	-1.74	0.87	0.83	—	4.1	0.004	0.69	0.0	0.04	28.07	0.00	2.034	17.94	0.00	3.1	96.9	0.0	0.57	0.73	0.87	0.83	—	11949	756	11	290	0	0	0	logfile
✔	6VPP	21315	2022-05-13	2020-02-04	4.4	5.69	—	5.4	0.005	0.96	0.0	0.05	15.79	0.01	2.087	11.75	0.30	5.2	94.7	0.1	-4.45	0.71	0.79	—	5.4	0.003	0.73	0.0	0.04	14.68	0.01	1.887	22.60	0.00	5.3	94.7	0.0	-0.94	1.72	0.70	0.79	—	9156	1164	5	1	2	0	0	logfile
✔	6J30	9773	2022-05-12	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.68	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.003	0.73	0.0	0.04	12.16	0.00	2.060	19.48	0.00	5.3	94.5	0.2	-0.65	1.90	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	3LoS	5137	2022-05-13	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.44	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	5V6P	8637	2022-05-13	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.65	0.0	0.03	12.71	0.00	1.883	12.84	0.00	2.4	97.4	0.2	3.20	1.62	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile

• ← previous
• Page 3 of 376
• next →