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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5FN2 | 3237 | 2022-12-12 | 2015-11-10 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.73 | 23.0 | 0.10 | 17.98 | 0.01 | 1.890 | 19.13 | 11.69 | 11.9 | 84.1 | 3.9 | -1.77 | 0.48 | 0.55 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.05 | 14.22 | 0.01 | 2.142 | 21.03 | 0.00 | 8.3 | 90.8 | 0.8 | -1.03 | 1.13 | 0.58 | 0.73 | — | 10276 | 1309 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2022-12-12 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.003 | 0.80 | 0.0 | 0.04 | 12.02 | 0.00 | 2.089 | 16.52 | 0.00 | 10.1 | 88.5 | 1.5 | -1.41 | 1.66 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 5FN3 | 3238 | 2022-12-12 | 2015-11-10 | 4.1 | 4.53 | — | 4.1 | 0.011 | 1.81 | 26.0 | 0.10 | 18.64 | 0.01 | 1.021 | 20.47 | 11.34 | 10.7 | 85.3 | 4.0 | -1.54 | 0.66 | 0.60 | — | 4.1 | 0.004 | 0.87 | 0.0 | 0.04 | 13.79 | 0.01 | 2.077 | 21.53 | 0.00 | 9.2 | 89.9 | 0.9 | -0.81 | 2.24 | 0.71 | 0.79 | — | 10291 | 1318 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YWC | 6852 | 2022-12-22 | 2017-11-29 | 4.3 | 4.48 | 4.24 | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 14.47 | 0.00 | 2.030 | 14.78 | 7.97 | 4.4 | 95.3 | 0.4 | -1.76 | 0.66 | 0.75 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 12.97 | 0.00 | 1.946 | 16.65 | 0.00 | 5.2 | 94.8 | 0.1 | 0.76 | 3.33 | 0.68 | 0.79 | — | 51108 | 6588 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2022-12-17 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.00 | 5.63 | 0.00 | 2.281 | 1.18 | 0.00 | 6.0 | 94.0 | 0.0 | -1.57 | 1.65 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PP8 | 20422 | 2022-12-16 | 2019-07-05 | 4.12 | 4.53 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.10 | 0.01 | 2.116 | 2.93 | 0.00 | 0.2 | 99.8 | 0.0 | -2.36 | 0.80 | 0.76 | — | 4.3 | 0.004 | 0.62 | 0.0 | 0.04 | 12.70 | 0.00 | 1.989 | 9.94 | 0.00 | 4.0 | 96.0 | 0.0 | -0.70 | 0.97 | 0.82 | 0.80 | — | 32335 | 2078 | 13 | 0 | 13 | 0 | 16234 | logfile |
✔ | 5V6P | 8637 | 2022-12-12 | 2017-03-17 | 4.1 | 4.04 | — | 4.1 | 0.015 | 1.37 | 0.0 | 0.08 | 9.65 | 0.01 | 2.463 | 1.41 | 0.00 | 2.6 | 97.0 | 0.4 | 0.18 | 0.40 | 0.58 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.03 | 12.71 | 0.00 | 1.883 | 12.84 | 0.00 | 2.4 | 97.4 | 0.2 | 3.20 | 1.62 | 0.41 | 0.66 | — | 9194 | 540 | 2 | 0 | 0 | 0 | 4676 | logfile |
✔ | 6G4S | 4348 | 2022-12-22 | 2018-03-28 | 4.0 | 4.37 | — | 3.9 | 0.005 | 1.05 | 0.0 | 0.07 | 21.38 | 0.01 | 1.911 | 1.77 | 0.00 | 8.6 | 91.2 | 0.2 | -3.72 | 0.72 | 0.69 | — | 3.9 | 0.004 | 0.71 | 0.0 | 0.03 | 21.09 | 0.00 | 2.009 | 7.98 | 0.00 | 11.6 | 88.4 | 0.0 | -0.68 | 2.10 | 0.81 | 0.73 | — | 48967 | 5224 | 33 | 1613 | 768 | 0 | 0 | logfile |
✔ | 6QJQ | 4566 | 2022-12-11 | 2019-01-24 | 3.7 | 3.99 | 2.14 | 4.1 | 0.021 | 1.17 | 0.0 | 0.11 | 13.36 | 0.01 | 2.499 | 5.58 | 0.00 | 4.0 | 94.0 | 2.0 | -4.41 | 0.39 | 0.75 | 2.60 | 4.1 | 0.004 | 0.79 | 0.0 | 0.05 | 14.26 | 0.00 | 2.261 | 10.37 | 0.00 | 6.0 | 94.0 | 0.0 | -2.92 | 1.26 | 0.38 | 0.75 | 1.88 | 1218 | 162 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iZR | 9757 | 2022-12-16 | 2018-12-20 | 4.7 | 4.86 | — | 4.7 | 0.004 | 0.90 | 0.0 | 0.05 | 11.50 | 0.01 | 2.086 | 6.64 | 0.26 | 6.9 | 93.1 | 0.0 | -4.07 | 0.68 | 0.78 | — | 4.7 | 0.004 | 0.86 | 0.0 | 0.05 | 12.98 | 0.00 | 2.077 | 22.21 | 0.00 | 6.6 | 93.4 | 0.0 | -0.51 | 2.07 | 0.66 | 0.71 | — | 84360 | 10470 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 5ZBo | 6746 | 2022-12-16 | 2018-02-12 | 4.12 | 4.69 | — | 4.8 | 0.001 | 0.38 | 0.0 | 0.04 | 15.92 | 0.00 | 2.148 | 1.93 | 0.49 | 11.1 | 86.2 | 2.7 | -4.88 | 0.71 | 0.60 | — | 4.1 | 0.004 | 0.80 | 0.0 | 0.04 | 13.19 | 0.00 | 2.084 | 21.72 | 0.00 | 6.6 | 93.4 | 0.0 | -2.55 | 2.97 | 0.74 | 0.80 | — | 89100 | 10860 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2022-12-12 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 9.02 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.86 | 0.0 | 0.05 | 12.68 | 0.00 | 2.153 | 15.07 | 0.00 | 13.6 | 86.4 | 0.0 | -2.57 | 1.05 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KLB | 0705 | 2022-12-14 | 2019-07-30 | 4.1 | 4.14 | — | 4.0 | 0.004 | 0.90 | 1.0 | 0.05 | 11.32 | 0.01 | 2.015 | 8.05 | 0.31 | 9.0 | 90.8 | 0.2 | -5.01 | 0.66 | 0.55 | — | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.30 | 0.00 | 1.885 | 15.29 | 0.00 | 9.8 | 90.2 | 0.0 | -1.69 | 2.90 | 0.68 | 0.59 | — | 21384 | 2467 | 11 | 50 | 4 | 11 | 0 | logfile |
✔ | 6QJH | 4563 | 2022-12-11 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.61 | 0.0 | 0.05 | 15.77 | 0.00 | 2.278 | 5.61 | 0.00 | 2.3 | 97.7 | 0.0 | -2.55 | 1.57 | 0.30 | 0.78 | 2.85 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NMC | 0446 | 2022-12-12 | 2019-01-10 | 4.24 | 4.55 | — | 4.2 | 0.014 | 1.16 | 6.0 | 0.07 | 16.40 | 0.01 | 2.015 | 20.07 | 2.45 | 10.2 | 89.4 | 0.4 | -4.23 | 0.86 | 0.76 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.04 | 14.59 | 0.00 | 1.863 | 21.51 | 0.00 | 8.1 | 91.9 | 0.0 | -1.09 | 1.84 | 0.89 | 0.84 | — | 12808 | 1480 | 8 | 25 | 2 | 6 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6NYB | 0541 | 2022-12-12 | 2019-02-11 | 4.1 | 4.15 | — | 4.0 | 0.014 | 1.76 | 3.0 | 0.09 | 14.33 | 0.00 | 2.070 | 7.08 | 3.66 | 5.4 | 94.4 | 0.2 | -3.02 | 0.75 | 0.74 | — | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 1.951 | 12.41 | 0.00 | 3.4 | 96.6 | 0.0 | 0.26 | 2.60 | 0.78 | 0.80 | — | 8842 | 1097 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6PPi | 20437 | 2022-12-20 | 2019-07-07 | 4.7 | 4.29 | — | 4.1 | 0.003 | 0.71 | 0.0 | 0.05 | 9.20 | 0.01 | 2.302 | 4.20 | 0.00 | 4.9 | 95.1 | 0.0 | -4.79 | 0.55 | 0.78 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 12.38 | 0.00 | 2.113 | 21.39 | 0.00 | 6.3 | 93.7 | 0.0 | -2.33 | 1.22 | 0.57 | 0.81 | — | 39504 | 4956 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJE | 10215 | 2022-12-15 | 2019-08-13 | 4.1 | 4.27 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.69 | 0.01 | 2.264 | 4.44 | 3.06 | 2.1 | 97.9 | 0.0 | -3.60 | 0.82 | 0.77 | — | 4.0 | 0.004 | 0.68 | 0.0 | 0.04 | 15.33 | 0.00 | 2.080 | 15.07 | 0.00 | 3.6 | 96.4 | 0.0 | 0.56 | 1.78 | 0.84 | 0.82 | — | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✔ | 5G5L | 3439 | 2022-12-19 | 2016-05-26 | 4.8 | 5.08 | — | 4.8 | 0.010 | 1.38 | 14.0 | 0.09 | 16.60 | 0.01 | 0.675 | 31.29 | 7.76 | 6.0 | 92.2 | 1.8 | -2.38 | 0.81 | 0.71 | — | 4.8 | 0.005 | 0.79 | 0.0 | 0.04 | 13.56 | 0.00 | 1.865 | 22.38 | 0.00 | 4.4 | 95.5 | 0.1 | 0.31 | 2.95 | 0.86 | 0.83 | — | 37349 | 4686 | 20 | 0 | 7 | 0 | 0 | logfile |