Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6G4W	4349	2022-07-07	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	21.52	0.01	0.760	5.05	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.004	0.70	0.0	0.03	23.60	0.00	2.004	11.37	0.00	9.6	90.3	0.1	-1.00	2.53	0.87	0.62	—	45223	4589	31	1563	768	0	0	logfile
✔	6SEE	10153	2022-07-03	2019-07-29	4.2	4.47	—	4.1	0.008	0.94	0.0	0.05	27.63	0.01	2.252	4.46	0.00	3.0	97.0	0.0	-1.74	0.87	0.83	—	4.1	0.004	0.69	0.0	0.04	28.07	0.00	2.034	17.94	0.00	3.1	96.9	0.0	0.57	0.73	0.87	0.83	—	11949	756	11	290	0	0	0	logfile
✔	6BE1	7088	2022-07-06	2017-10-24	4.31	4.45	—	4.3	0.006	1.18	0.0	0.06	12.21	0.01	2.301	4.36	1.66	7.1	92.9	0.0	-4.36	0.76	0.77	—	4.3	0.006	0.93	0.0	0.05	12.03	0.00	1.410	14.16	0.00	5.7	94.3	0.0	-1.81	0.75	0.79	0.82	—	16910	1995	15	0	41	11	0	logfile
✔	5oAF	3773	2022-07-04	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.46	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.70	0.0	0.04	12.90	0.00	2.107	13.78	0.00	4.1	95.8	0.0	-0.36	3.56	0.72	0.72	—	19748	2538	12	0	6	0	0	logfile
✔	6RQC	4980	2022-07-07	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.16	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.004	0.70	0.0	0.04	17.01	0.00	1.841	16.11	0.00	10.9	89.1	0.0	-2.26	3.24	0.80	0.70	—	105223	6174	23	176	15	0	51978	logfile
✔	6U9F	20696	2022-07-04	2019-09-08	4.35	4.41	—	4.3	0.009	1.10	0.0	0.06	9.47	0.01	2.193	7.59	0.15	13.4	86.6	0.0	-4.71	0.78	0.78	—	4.3	0.003	0.67	0.0	0.05	11.85	0.00	2.089	12.84	0.00	8.5	91.5	0.0	-1.93	0.87	0.79	0.79	—	19179	2550	6	0	0	0	0	logfile
✔	6DVZ	8921	2022-07-04	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.82	0.0	0.04	13.89	0.01	1.630	12.23	0.00	13.2	86.4	0.4	-2.20	0.89	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	6V85	21095	2022-07-04	2019-12-10	4.38	4.12	—	3.9	0.006	0.89	2.0	0.05	14.46	0.01	2.077	22.33	0.45	13.5	86.0	0.4	-3.59	0.77	0.71	—	3.9	0.003	0.76	0.0	0.04	14.12	0.01	2.008	15.62	0.00	9.8	90.1	0.0	-0.59	1.75	0.79	0.74	—	17878	2240	7	0	2	0	0	logfile
✔	5T6R	8368	2022-07-05	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.55	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.006	0.83	0.0	0.04	16.52	0.01	1.761	17.41	0.00	9.9	89.5	0.6	-1.97	1.61	0.84	0.82	—	126616	6441	51	3483	299	12	0	logfile
✔	5Z3U	6882	2022-07-04	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	19.01	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.003	0.63	0.0	0.04	24.49	0.00	2.052	11.49	0.00	5.5	94.5	0.0	0.31	0.80	0.75	0.76	—	16766	1341	12	292	3	0	0	logfile
✔	6QJP	4565	2022-07-02	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	5W1R	8751	2022-07-05	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.31	0.01	2.078	13.63	0.00	10.0	89.2	0.7	-1.80	1.16	0.66	0.68	—	25559	3563	1	0	0	0	0	logfile
✔	6HTS	3954	2022-07-07	2018-10-04	4.8	5.78	—	4.7	0.004	0.55	0.0	0.04	17.72	0.00	1.820	11.83	1.39	1.7	98.3	0.0	-2.23	0.86	0.69	—	4.7	0.003	0.66	0.0	0.04	19.17	0.00	2.097	17.45	0.00	2.8	97.2	0.0	0.68	3.56	0.88	0.78	—	38744	4453	26	300	7	0	0	logfile
✔	6Ji1	9832	2022-07-04	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.50	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.003	0.77	0.0	0.04	12.99	0.01	2.065	10.76	0.00	7.6	91.8	0.7	-1.15	0.86	0.57	0.70	—	13992	1848	4	0	0	0	0	logfile
✔	5FN5	3240	2022-07-03	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.65	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.004	0.86	0.0	0.04	13.51	0.01	2.157	20.76	0.00	9.4	89.9	0.7	-0.92	1.05	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	6QJH	4563	2022-07-02	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6Fo0	4286	2022-07-03	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.64	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.004	0.61	0.0	0.04	12.47	0.00	1.919	11.06	0.00	7.1	92.9	0.0	-1.14	2.41	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	6PVQ	20497	2022-07-04	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.003	0.81	0.0	0.04	13.56	0.00	2.167	15.32	0.00	12.8	87.0	0.2	-2.37	1.11	0.67	0.77	—	17640	2160	4	0	0	0	0	logfile
✔	5ZBG	6911	2022-07-04	2018-02-11	4.36	4.83	—	4.5	0.005	0.70	0.0	0.04	13.89	0.00	2.258	7.82	4.79	7.0	92.7	0.3	-2.22	0.69	0.81	—	4.5	0.004	0.69	0.0	0.04	12.90	0.00	2.203	14.77	0.00	6.2	93.8	0.0	1.21	1.02	0.70	0.83	—	21260	2680	4	0	0	0	0	logfile
✔	3JD8	6640	2022-07-03	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.86	0.0	0.05	12.39	0.00	2.043	18.02	0.00	8.6	90.5	0.9	-0.81	1.76	0.57	0.72	—	8050	1133	1	0	25	0	0	logfile

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