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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oKS | 20103 | 2022-05-13 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.009 | 1.10 | 0.0 | 0.05 | 14.65 | 0.01 | 2.124 | 15.44 | 0.00 | 19.1 | 80.9 | 0.0 | -4.60 | 2.23 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PUR | 20479 | 2022-05-17 | 2019-07-18 | 4.4 | 5.34 | — | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 14.69 | 0.01 | 2.255 | 9.98 | 1.66 | 7.9 | 91.6 | 0.5 | -3.61 | 0.74 | 0.81 | — | 4.1 | 0.004 | 0.68 | 0.0 | 0.04 | 13.33 | 0.00 | 2.124 | 14.61 | 0.00 | 7.8 | 92.1 | 0.1 | 0.13 | 0.56 | 0.75 | 0.84 | — | 37268 | 5224 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6PKW | 20368 | 2022-05-15 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.19 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.002 | 0.56 | 0.0 | 0.04 | 9.71 | 0.00 | 2.189 | 6.89 | 0.00 | 4.2 | 95.8 | 0.0 | 2.08 | 1.62 | 0.67 | 0.79 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6QG2 | 4545 | 2022-05-17 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.73 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.126 | 17.40 | 0.00 | 10.5 | 88.9 | 0.6 | -1.87 | 1.68 | 0.69 | 0.56 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FUU | 3308 | 2022-05-14 | 2016-01-29 | 4.19 | 4.30 | — | 4.2 | 0.013 | 1.78 | 3.0 | 0.11 | 10.98 | 0.02 | 1.862 | 17.54 | 1.20 | 6.2 | 92.2 | 1.7 | -2.38 | 0.69 | 0.72 | — | 4.2 | 0.005 | 0.84 | 0.0 | 0.05 | 12.44 | 0.00 | 2.154 | 14.81 | 0.00 | 7.6 | 91.9 | 0.5 | -1.43 | 0.95 | 0.77 | 0.83 | — | 20735 | 2281 | 16 | 0 | 213 | 0 | 0 | logfile |
✔ | 5LMQ | 4076 | 2022-05-12 | 2016-08-01 | 4.2 | 4.46 | 4.25 | 4.2 | 0.009 | 1.44 | 30.0 | 0.12 | 20.82 | 0.01 | 1.387 | 19.45 | 21.46 | 10.5 | 86.1 | 3.4 | -2.56 | 0.80 | 0.76 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.04 | 16.79 | 0.01 | 1.808 | 33.44 | 0.00 | 9.2 | 90.3 | 0.5 | -1.28 | 1.62 | 0.84 | 0.85 | — | 55841 | 2635 | 29 | 1612 | 66 | 0 | 0 | logfile |
✔ | 6M7J | 9047 | 2022-05-15 | 2018-08-20 | 4.4 | 5.36 | — | 4.4 | 0.008 | 1.07 | 2.0 | 0.05 | 13.28 | 0.01 | 1.543 | 73.72 | 0.22 | 12.3 | 87.5 | 0.2 | -4.19 | 0.92 | 0.87 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.02 | 0.00 | 1.953 | 17.20 | 0.00 | 6.2 | 93.7 | 0.1 | -0.58 | 0.68 | 0.92 | 0.87 | — | 27183 | 3349 | 10 | 57 | 4 | 0 | 0 | logfile |
✔ | 6PKV | 20367 | 2022-05-15 | 2019-06-30 | 4.3 | 4.49 | — | 4.3 | 0.005 | 0.86 | 0.0 | 0.05 | 8.98 | 0.01 | 2.311 | 3.59 | 0.00 | 4.7 | 95.3 | 0.0 | -3.45 | 0.67 | 0.78 | — | 4.3 | 0.002 | 0.56 | 0.0 | 0.04 | 9.94 | 0.00 | 2.255 | 6.39 | 0.00 | 4.1 | 95.9 | 0.0 | 1.40 | 1.92 | 0.67 | 0.77 | — | 28284 | 4260 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6FLT | 4276 | 2022-05-12 | 2018-01-28 | 3.42 | 3.32 | — | 3.5 | 0.014 | 1.15 | 0.0 | 0.06 | 8.31 | 0.00 | 2.330 | 9.03 | 0.00 | 14.3 | 85.7 | 0.0 | -5.36 | 0.44 | 0.74 | 2.91 | 3.5 | 0.005 | 0.67 | 0.0 | 0.05 | 10.57 | 0.00 | 2.300 | 12.13 | 0.00 | 20.7 | 79.3 | 0.0 | -5.03 | 2.04 | 0.42 | 0.79 | 4.07 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 6oLM | 20117 | 2022-05-14 | 2019-04-16 | 4.4 | 5.29 | — | 4.3 | 0.012 | 1.28 | 0.0 | 0.06 | 6.94 | 0.01 | 2.397 | 0.92 | 0.00 | 2.0 | 98.0 | 0.0 | -0.33 | 0.89 | 0.79 | — | 4.3 | 0.003 | 0.66 | 0.0 | 0.04 | 5.44 | 0.00 | 2.217 | 8.78 | 0.00 | 6.2 | 93.8 | 0.0 | -0.92 | 1.58 | 0.91 | 0.83 | — | 10602 | 2112 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6CND | 7532 | 2022-05-18 | 2018-03-08 | 4.8 | 4.76 | — | 4.5 | 0.006 | 1.14 | 3.0 | 0.06 | 14.17 | 0.01 | 2.023 | 38.78 | 0.72 | 18.0 | 80.4 | 1.6 | -5.18 | 0.75 | 0.67 | — | 4.5 | 0.004 | 0.86 | 0.0 | 0.05 | 15.24 | 0.00 | 2.091 | 23.86 | 0.00 | 12.8 | 86.3 | 0.9 | -2.34 | 0.84 | 0.85 | 0.80 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 5VCA | 8659 | 2022-05-14 | 2017-03-31 | 4.8 | 6.04 | — | 5.9 | 0.021 | 2.64 | 50.0 | 0.15 | 5.91 | 0.01 | 1.097 | 2.19 | 0.00 | 6.9 | 90.0 | 3.1 | -4.41 | 0.73 | 0.70 | — | 5.9 | 0.003 | 0.67 | 0.0 | 0.04 | 4.67 | 0.00 | 2.279 | 4.03 | 0.00 | 10.8 | 89.2 | 0.0 | -0.65 | 2.91 | 0.75 | 0.67 | — | 16080 | 3264 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ2 | 20950 | 2022-05-12 | 2019-11-14 | 4.2 | 4.39 | — | 4.3 | 0.009 | 1.13 | 0.0 | 0.05 | 13.78 | 0.01 | 2.197 | 31.18 | 2.00 | 15.5 | 84.3 | 0.2 | -5.29 | 0.69 | 0.78 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 11.99 | 0.00 | 2.157 | 13.84 | 0.00 | 5.3 | 94.6 | 0.1 | 0.06 | 0.98 | 0.67 | 0.76 | — | 7392 | 1140 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GSA | 0051 | 2022-05-14 | 2018-06-13 | 4.2 | 5.94 | — | 5.0 | 0.011 | 1.24 | 4.0 | 0.09 | 12.00 | 0.01 | 2.189 | 4.82 | 1.75 | 5.1 | 94.7 | 0.2 | -2.92 | 0.67 | 0.44 | — | 5.0 | 0.003 | 0.71 | 0.0 | 0.04 | 12.35 | 0.00 | 2.145 | 17.00 | 0.00 | 4.7 | 95.3 | 0.0 | 0.04 | 1.16 | 0.83 | 0.73 | — | 16272 | 1999 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A6F | 3063 | 2022-05-13 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.7 | 0.002 | 0.57 | 0.0 | 0.04 | 10.94 | 0.00 | 2.010 | 10.19 | 0.00 | 5.1 | 94.9 | 0.0 | -1.00 | 0.99 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✔ | 6N52 | 0346 | 2022-05-13 | 2018-11-20 | 4.0 | 4.42 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 8.41 | 0.01 | 2.328 | 4.22 | 0.00 | 4.1 | 95.9 | 0.0 | -4.16 | 0.72 | 0.78 | — | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 11.27 | 0.01 | 2.204 | 11.33 | 0.00 | 6.0 | 94.0 | 0.0 | -0.54 | 1.61 | 0.73 | 0.81 | — | 11108 | 1548 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6D83 | 7453 | 2022-05-14 | 2018-04-25 | 4.27 | 4.38 | — | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 11.34 | 0.01 | 1.904 | 6.14 | 0.05 | 5.0 | 94.9 | 0.0 | -4.30 | 0.80 | 0.76 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 14.03 | 0.00 | 1.947 | 18.29 | 0.00 | 4.9 | 95.1 | 0.0 | -1.00 | 1.08 | 0.81 | 0.79 | — | 16588 | 2063 | 10 | 0 | 4 | 0 | 0 | logfile |
✔ | 6R25 | 4710 | 2022-05-14 | 2019-03-15 | 4.61 | 8.06 | — | 3.8 | 0.009 | 1.05 | 0.0 | 0.06 | 25.57 | 0.02 | 1.036 | 12.98 | 5.67 | 4.9 | 93.8 | 1.3 | -2.97 | 0.74 | 0.45 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 25.45 | 0.00 | 2.059 | 13.80 | 0.00 | 2.7 | 97.2 | 0.1 | 1.14 | 1.46 | 0.89 | 0.72 | — | 18654 | 1544 | 16 | 294 | 4 | 314 | 0 | logfile |
✔ | 6BX3 | 7303 | 2022-05-13 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 25.18 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.86 | 0.0 | 0.05 | 13.15 | 0.00 | 2.112 | 21.18 | 0.00 | 17.0 | 82.9 | 0.1 | -3.58 | 1.39 | 0.74 | 0.72 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2022-05-12 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 24.50 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.3 | 0.003 | 0.66 | 0.0 | 0.03 | 19.58 | 0.00 | 1.949 | 10.68 | 0.00 | 6.2 | 93.8 | 0.0 | 2.28 | 2.49 | 0.03 | 0.06 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |