Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MLV	23911	2023-11-16	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	10.90	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.014	1.03	0.0	0.05	12.11	0.01	2.077	29.77	0.00	11.6	88.4	0.0	-3.33	1.72	0.70	0.70	—	15055	1919	16	0	22	0	0	logfile
✔	8GTD	34250	2023-11-20	2022-09-08	4.7	4.27	4.25	4.2	0.014	2.16	0.0	0.00	5.49	0.01	2.285	3.73	0.00	8.4	90.0	1.6	0.41	0.50	0.44	—	4.2	0.004	0.93	0.0	0.00	6.20	0.00	2.228	4.76	0.00	19.1	80.2	0.7	-2.63	1.26	0.52	0.51	—	29580	7392	24	0	0	0	0	logfile
✔	8DLK	27504	2023-11-14	2022-07-08	3.04	3.80	3.14	3.5	0.005	0.86	0.0	0.06	13.51	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.004	0.59	0.0	0.04	15.32	0.00	2.226	9.53	0.00	2.5	97.5	0.0	1.95	1.17	0.82	0.86	2.51	6554	797	4	0	7	0	0	logfile
✔	8E5L	27914	2023-11-17	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	8SB0	40286	2023-11-17	2023-04-02	4.2	4.27	3.94	4.2	0.006	0.95	0.0	0.05	13.58	0.01	2.050	2.37	0.05	6.4	93.3	0.2	-1.76	0.73	0.77	—	4.2	0.008	0.90	0.0	0.05	14.06	0.01	2.106	11.77	0.00	9.7	90.1	0.2	-1.98	0.66	0.75	0.79	—	19741	2445	24	0	57	0	0	logfile
✔	6U6i	20666	2023-11-21	2019-08-29	3.12	3.43	—	3.4	0.006	0.49	0.0	0.07	11.32	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.48	0.0	0.04	13.01	0.00	2.097	5.71	0.00	5.0	95.0	0.0	-0.04	0.51	0.81	0.83	4.17	21701	1496	9	0	11	0	10337	logfile
✔	7Wi8	32527	2023-11-14	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	13.84	0.01	2.315	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.003	0.68	0.0	0.04	11.97	0.00	2.217	10.21	0.00	11.6	88.4	0.0	-2.97	1.82	0.69	0.78	—	9268	1446	4	0	4	0	0	logfile
✔	7SB5	24970	2023-11-20	2021-09-23	4.2	4.53	4.05	4.2	0.021	1.77	8.0	0.11	10.00	0.01	2.138	1.99	0.00	2.2	97.8	0.0	0.57	0.86	0.85	—	4.2	0.003	0.59	0.0	0.04	11.25	0.00	2.160	7.15	0.00	2.9	97.1	0.0	0.47	0.58	0.86	0.87	—	29457	3550	19	0	263	0	0	logfile
✔	6UM2	20816	2023-11-15	2019-10-08	4.32	4.49	—	4.3	0.013	1.78	10.0	0.09	15.37	0.01	1.505	10.33	0.41	6.7	92.9	0.4	-4.93	0.73	0.67	—	4.3	0.005	0.83	0.0	0.05	13.78	0.01	2.093	16.94	0.00	14.1	85.8	0.1	-3.87	1.39	0.80	0.76	—	13094	1686	3	0	7	0	0	logfile
✔	7VT0	32117	2023-11-15	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.004	0.78	0.0	0.05	15.86	0.00	2.132	10.74	0.00	14.4	84.8	0.8	-3.20	1.20	0.69	0.78	2.83	10536	1326	2	0	0	0	0	logfile
✔	6UDA	20735	2023-11-18	2019-09-19	4.2	4.81	—	4.4	0.017	1.89	3.0	0.22	10.41	0.01	2.004	2.10	0.34	2.4	97.1	0.5	0.89	0.71	0.65	—	4.4	0.004	0.73	0.0	0.04	12.66	0.00	2.101	13.22	0.00	5.8	94.2	0.0	-0.41	0.83	0.85	0.83	—	23733	3024	18	0	18	0	0	logfile
✔	7TEZ	25856	2023-11-14	2022-01-06	3.27	3.81	—	3.6	0.006	0.90	0.0	0.06	13.44	0.01	2.323	2.50	0.71	1.5	98.5	0.0	0.05	0.79	0.84	2.89	3.6	0.003	0.57	0.0	0.04	15.79	0.00	2.212	7.81	0.00	2.4	97.6	0.0	1.66	0.63	0.81	0.86	1.99	6553	797	4	0	7	0	0	logfile
✔	7UXA	26856	2023-11-14	2022-05-05	3.28	3.56	3.32	3.5	0.003	0.58	0.0	0.04	11.95	0.00	2.084	7.47	0.88	5.2	94.8	0.0	-0.97	0.78	0.82	2.37	3.5	0.003	0.55	0.0	0.04	14.52	0.00	2.059	10.45	0.00	4.2	95.8	0.0	0.09	0.58	0.77	0.81	1.68	8120	820	5	78	2	0	0	logfile
✔	7ZT6	14955	2023-11-14	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.25	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.002	0.60	0.0	0.04	14.15	0.00	2.215	10.95	0.00	2.5	97.5	0.0	0.80	0.34	0.93	0.88	1.71	8073	1031	3	0	1	0	0	logfile
✔	7UiF	26544	2023-11-15	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.27	0.00	2.026	20.55	0.00	3.5	96.5	0.0	0.05	1.21	0.61	0.62	—	63137	7857	33	0	0	0	0	logfile
✔	7Z1H	14446	2023-11-16	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.94	2.0	0.04	14.23	0.00	1.692	20.59	0.00	11.7	87.9	0.4	-1.08	0.41	0.79	0.77	1.28	15032	1848	1	0	0	0	0	logfile
✔	6PZ8	20527	2023-11-20	2019-07-31	4.19	4.96	4.49	4.4	0.018	1.82	0.0	0.10	11.12	0.01	2.247	1.37	0.30	3.2	96.2	0.6	0.33	0.75	0.57	—	4.2	0.005	0.86	0.0	0.05	13.15	0.01	2.110	30.72	0.00	8.1	91.6	0.3	-1.52	1.13	0.77	0.66	—	28683	3585	42	0	78	0	0	logfile
✔	7S8V	24927	2023-11-15	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	12.46	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.04	14.49	0.00	1.955	15.73	0.00	9.4	90.6	0.0	-2.21	1.59	0.70	0.71	0.69	12502	782	7	0	12	0	6045	logfile
✔	6RRS	4989	2023-11-21	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.84	0.0	0.00	7.15	0.00	2.195	1.79	0.00	15.0	85.0	0.0	-1.14	2.03	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	6X0V	21985	2023-11-13	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile

• ← previous
• Page 5 of 528
• next →