Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oKS	20103	2022-05-13	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.009	1.10	0.0	0.05	14.65	0.01	2.124	15.44	0.00	19.1	80.9	0.0	-4.60	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	6PUR	20479	2022-05-17	2019-07-18	4.4	5.34	—	4.1	0.008	1.07	0.0	0.06	14.69	0.01	2.255	9.98	1.66	7.9	91.6	0.5	-3.61	0.74	0.81	—	4.1	0.004	0.68	0.0	0.04	13.33	0.00	2.124	14.61	0.00	7.8	92.1	0.1	0.13	0.56	0.75	0.84	—	37268	5224	8	0	8	0	0	logfile
✔	6PKW	20368	2022-05-15	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.19	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.71	0.00	2.189	6.89	0.00	4.2	95.8	0.0	2.08	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	6QG2	4545	2022-05-17	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.73	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.126	17.40	0.00	10.5	88.9	0.6	-1.87	1.68	0.69	0.56	—	38664	4961	16	0	0	0	0	logfile
✔	5FUU	3308	2022-05-14	2016-01-29	4.19	4.30	—	4.2	0.013	1.78	3.0	0.11	10.98	0.02	1.862	17.54	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.005	0.84	0.0	0.05	12.44	0.00	2.154	14.81	0.00	7.6	91.9	0.5	-1.43	0.95	0.77	0.83	—	20735	2281	16	0	213	0	0	logfile
✔	5LMQ	4076	2022-05-12	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.82	0.01	1.387	19.45	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.005	0.80	0.0	0.04	16.79	0.01	1.808	33.44	0.00	9.2	90.3	0.5	-1.28	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	6M7J	9047	2022-05-15	2018-08-20	4.4	5.36	—	4.4	0.008	1.07	2.0	0.05	13.28	0.01	1.543	73.72	0.22	12.3	87.5	0.2	-4.19	0.92	0.87	—	4.4	0.003	0.66	0.0	0.04	14.02	0.00	1.953	17.20	0.00	6.2	93.7	0.1	-0.58	0.68	0.92	0.87	—	27183	3349	10	57	4	0	0	logfile
✔	6PKV	20367	2022-05-15	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.59	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.002	0.56	0.0	0.04	9.94	0.00	2.255	6.39	0.00	4.1	95.9	0.0	1.40	1.92	0.67	0.77	—	28284	4260	4	0	88	0	0	logfile
✔	6FLT	4276	2022-05-12	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.42	0.79	4.07	8060	580	10	0	0	0	4100	logfile
✔	6oLM	20117	2022-05-14	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.66	0.0	0.04	5.44	0.00	2.217	8.78	0.00	6.2	93.8	0.0	-0.92	1.58	0.91	0.83	—	10602	2112	12	0	6	0	0	logfile
✔	6CND	7532	2022-05-18	2018-03-08	4.8	4.76	—	4.5	0.006	1.14	3.0	0.06	14.17	0.01	2.023	38.78	0.72	18.0	80.4	1.6	-5.18	0.75	0.67	—	4.5	0.004	0.86	0.0	0.05	15.24	0.00	2.091	23.86	0.00	12.8	86.3	0.9	-2.34	0.84	0.85	0.80	—	47836	5695	27	112	69	0	0	logfile
✔	5VCA	8659	2022-05-14	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.9	0.003	0.67	0.0	0.04	4.67	0.00	2.279	4.03	0.00	10.8	89.2	0.0	-0.65	2.91	0.75	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	6UZ2	20950	2022-05-12	2019-11-14	4.2	4.39	—	4.3	0.009	1.13	0.0	0.05	13.78	0.01	2.197	31.18	2.00	15.5	84.3	0.2	-5.29	0.69	0.78	—	4.3	0.003	0.79	0.0	0.04	11.99	0.00	2.157	13.84	0.00	5.3	94.6	0.1	0.06	0.98	0.67	0.76	—	7392	1140	2	0	0	0	0	logfile
✔	6GSA	0051	2022-05-14	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.82	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.003	0.71	0.0	0.04	12.35	0.00	2.145	17.00	0.00	4.7	95.3	0.0	0.04	1.16	0.83	0.73	—	16272	1999	5	0	0	0	0	logfile
✔	5A6F	3063	2022-05-13	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	6N52	0346	2022-05-13	2018-11-20	4.0	4.42	—	3.9	0.003	0.69	0.0	0.05	8.41	0.01	2.328	4.22	0.00	4.1	95.9	0.0	-4.16	0.72	0.78	—	3.9	0.004	0.69	0.0	0.04	11.27	0.01	2.204	11.33	0.00	6.0	94.0	0.0	-0.54	1.61	0.73	0.81	—	11108	1548	4	0	4	0	0	logfile
✔	6D83	7453	2022-05-14	2018-04-25	4.27	4.38	—	4.3	0.005	0.92	0.0	0.05	11.34	0.01	1.904	6.14	0.05	5.0	94.9	0.0	-4.30	0.80	0.76	—	4.3	0.004	0.75	0.0	0.05	14.03	0.00	1.947	18.29	0.00	4.9	95.1	0.0	-1.00	1.08	0.81	0.79	—	16588	2063	10	0	4	0	0	logfile
✔	6R25	4710	2022-05-14	2019-03-15	4.61	8.06	—	3.8	0.009	1.05	0.0	0.06	25.57	0.02	1.036	12.98	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.003	0.63	0.0	0.04	25.45	0.00	2.059	13.80	0.00	2.7	97.2	0.1	1.14	1.46	0.89	0.72	—	18654	1544	16	294	4	314	0	logfile
✔	6BX3	7303	2022-05-13	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	25.18	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	13.15	0.00	2.112	21.18	0.00	17.0	82.9	0.1	-3.58	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	5M6S	3451	2022-05-12	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.03	0.06	—	1593	98	1	0	0	0	793	logfile

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