Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FN2	3237	2022-12-12	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.13	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.004	0.93	0.0	0.05	14.22	0.01	2.142	21.03	0.00	8.3	90.8	0.8	-1.03	1.13	0.58	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	4UiS	2974	2022-12-12	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.003	0.80	0.0	0.04	12.02	0.00	2.089	16.52	0.00	10.1	88.5	1.5	-1.41	1.66	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	5FN3	3238	2022-12-12	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.47	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.87	0.0	0.04	13.79	0.01	2.077	21.53	0.00	9.2	89.9	0.9	-0.81	2.24	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5YWC	6852	2022-12-22	2017-11-29	4.3	4.48	4.24	4.3	0.004	0.80	0.0	0.04	14.47	0.00	2.030	14.78	7.97	4.4	95.3	0.4	-1.76	0.66	0.75	—	4.3	0.005	0.76	0.0	0.04	12.97	0.00	1.946	16.65	0.00	5.2	94.8	0.1	0.76	3.33	0.68	0.79	—	51108	6588	16	0	20	0	0	logfile
✔	5VLZ	8709	2022-12-17	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	6PP8	20422	2022-12-16	2019-07-05	4.12	4.53	—	4.3	0.003	0.72	0.0	0.04	12.10	0.01	2.116	2.93	0.00	0.2	99.8	0.0	-2.36	0.80	0.76	—	4.3	0.004	0.62	0.0	0.04	12.70	0.00	1.989	9.94	0.00	4.0	96.0	0.0	-0.70	0.97	0.82	0.80	—	32335	2078	13	0	13	0	16234	logfile
✔	5V6P	8637	2022-12-12	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.65	0.0	0.03	12.71	0.00	1.883	12.84	0.00	2.4	97.4	0.2	3.20	1.62	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	6G4S	4348	2022-12-22	2018-03-28	4.0	4.37	—	3.9	0.005	1.05	0.0	0.07	21.38	0.01	1.911	1.77	0.00	8.6	91.2	0.2	-3.72	0.72	0.69	—	3.9	0.004	0.71	0.0	0.03	21.09	0.00	2.009	7.98	0.00	11.6	88.4	0.0	-0.68	2.10	0.81	0.73	—	48967	5224	33	1613	768	0	0	logfile
✔	6QJQ	4566	2022-12-11	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	6iZR	9757	2022-12-16	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.64	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.004	0.86	0.0	0.05	12.98	0.00	2.077	22.21	0.00	6.6	93.4	0.0	-0.51	2.07	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✔	5ZBo	6746	2022-12-16	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.004	0.80	0.0	0.04	13.19	0.00	2.084	21.72	0.00	6.6	93.4	0.0	-2.55	2.97	0.74	0.80	—	89100	10860	60	0	0	0	0	logfile
✔	6HV8	0287	2022-12-12	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	9.02	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	12.68	0.00	2.153	15.07	0.00	13.6	86.4	0.0	-2.57	1.05	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6KLB	0705	2022-12-14	2019-07-30	4.1	4.14	—	4.0	0.004	0.90	1.0	0.05	11.32	0.01	2.015	8.05	0.31	9.0	90.8	0.2	-5.01	0.66	0.55	—	4.0	0.003	0.73	0.0	0.04	13.30	0.00	1.885	15.29	0.00	9.8	90.2	0.0	-1.69	2.90	0.68	0.59	—	21384	2467	11	50	4	11	0	logfile
✔	6QJH	4563	2022-12-11	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.30	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6NMC	0446	2022-12-12	2019-01-10	4.24	4.55	—	4.2	0.014	1.16	6.0	0.07	16.40	0.01	2.015	20.07	2.45	10.2	89.4	0.4	-4.23	0.86	0.76	—	4.2	0.005	0.76	0.0	0.04	14.59	0.00	1.863	21.51	0.00	8.1	91.9	0.0	-1.09	1.84	0.89	0.84	—	12808	1480	8	25	2	6	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6NYB	0541	2022-12-12	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	7.08	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.003	0.77	0.0	0.04	13.92	0.00	1.951	12.41	0.00	3.4	96.6	0.0	0.26	2.60	0.78	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	6PPi	20437	2022-12-20	2019-07-07	4.7	4.29	—	4.1	0.003	0.71	0.0	0.05	9.20	0.01	2.302	4.20	0.00	4.9	95.1	0.0	-4.79	0.55	0.78	—	4.1	0.004	0.77	0.0	0.05	12.38	0.00	2.113	21.39	0.00	6.3	93.7	0.0	-2.33	1.22	0.57	0.81	—	39504	4956	12	0	0	0	0	logfile
✔	6SJE	10215	2022-12-15	2019-08-13	4.1	4.27	—	4.1	0.003	0.59	0.0	0.04	13.69	0.01	2.264	4.44	3.06	2.1	97.9	0.0	-3.60	0.82	0.77	—	4.0	0.004	0.68	0.0	0.04	15.33	0.00	2.080	15.07	0.00	3.6	96.4	0.0	0.56	1.78	0.84	0.82	—	24115	2847	4	68	0	0	0	logfile
✔	5G5L	3439	2022-12-19	2016-05-26	4.8	5.08	—	4.8	0.010	1.38	14.0	0.09	16.60	0.01	0.675	31.29	7.76	6.0	92.2	1.8	-2.38	0.81	0.71	—	4.8	0.005	0.79	0.0	0.04	13.56	0.00	1.865	22.38	0.00	4.4	95.5	0.1	0.31	2.95	0.86	0.83	—	37349	4686	20	0	7	0	0	logfile

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