Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7C9i	30312	2023-04-21	2020-06-05	3.1	3.26	—	3.2	0.008	1.06	0.0	0.06	10.62	0.01	2.232	3.13	0.18	6.3	93.7	0.0	-3.93	0.66	0.83	3.89	3.3	0.003	0.61	0.0	0.04	14.33	0.00	2.072	5.70	0.00	5.3	94.7	0.0	-0.19	0.48	0.68	0.86	2.70	10853	1314	13	0	26	0	0	logfile
✔	7M7J	23715	2023-04-26	2021-03-28	4.3	5.19	—	4.4	0.005	0.93	1.0	0.06	15.47	0.01	2.117	19.19	5.04	6.4	93.5	0.1	-2.14	0.84	0.71	—	4.5	0.005	0.77	0.0	0.04	13.76	0.01	2.081	31.30	0.00	7.3	92.7	0.0	-1.55	1.27	0.86	0.78	—	23224	3124	6	0	0	0	0	logfile
✔	6Uo9	20823	2023-04-21	2019-10-14	4.8	5.30	—	4.9	0.006	1.38	1.0	0.07	13.53	0.01	2.227	6.41	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.9	0.003	0.76	0.0	0.04	13.05	0.00	2.201	12.12	0.00	6.6	93.4	0.0	-0.21	1.36	0.81	0.81	—	9915	1365	9	0	14	0	0	logfile
✔	6CP5	7547	2023-04-21	2018-03-13	4.2	4.19	—	4.2	0.030	1.71	0.0	0.28	12.95	0.01	1.785	24.08	2.24	7.2	92.0	0.8	-4.36	0.50	0.70	—	4.2	0.004	1.25	0.0	0.11	13.20	0.00	2.041	25.26	0.00	5.3	94.5	0.2	-1.36	1.04	0.51	0.71	—	9413	1234	19	0	4	0	0	logfile
✔	7TW2	26148	2023-04-22	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.68	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.003	0.70	0.0	0.04	13.78	0.00	2.110	14.59	0.00	3.2	96.8	0.0	1.34	1.65	0.67	0.76	—	12838	1619	4	0	2	0	0	logfile
✔	6MAR	9062	2023-04-25	2018-08-28	4.5	4.66	4.48	4.4	0.007	1.04	0.0	0.07	9.48	0.01	2.031	7.46	0.26	9.8	90.0	0.2	-3.41	0.78	0.81	—	4.4	0.005	0.79	0.0	0.05	11.55	0.00	2.113	16.62	0.00	10.6	89.4	0.0	-2.02	1.38	0.78	0.82	—	19211	2225	47	0	130	0	0	logfile
✔	7B1C	11983	2023-04-24	2020-11-24	3.74	4.50	3.85	3.7	0.010	1.23	0.0	0.08	12.40	0.01	2.139	14.84	2.17	9.5	90.5	0.0	-2.29	0.88	0.78	2.24	3.7	0.003	0.70	0.0	0.04	13.38	0.00	2.140	12.02	0.00	7.0	93.0	0.0	-1.99	0.52	0.88	0.81	2.00	17197	2440	21	0	35	0	0	logfile
✔	7W0L	32243	2023-04-23	2021-11-18	3.57	2.46	3.66	2.2	0.010	1.00	0.0	0.05	14.87	0.00	1.891	13.94	0.08	8.6	91.3	0.1	-3.27	0.76	0.78	2.29	2.2	0.004	0.74	0.0	0.04	16.71	0.00	2.101	11.84	0.00	6.6	93.4	0.0	-1.08	0.49	0.75	0.77	2.02	11526	1455	8	0	2	0	0	logfile
✔	7SVA	25446	2023-04-20	2021-11-18	3.26	3.94	3.27	3.3	0.003	0.60	0.0	0.04	14.90	0.01	2.078	8.79	0.29	5.6	94.4	0.0	-0.44	0.79	0.72	3.06	3.3	0.003	0.58	0.0	0.04	16.03	0.00	2.115	11.26	0.00	5.6	94.4	0.0	0.02	1.89	0.90	0.87	2.47	6515	792	3	11	1	0	0	logfile
✔	7Uo4	26639	2023-04-22	2022-04-12	3.38	4.18	3.37	3.8	0.005	0.69	0.0	0.12	12.01	0.00	1.885	7.37	1.27	7.2	92.8	0.0	-1.06	0.83	0.79	2.83	3.8	0.003	0.66	0.0	0.06	13.66	0.00	2.011	9.43	0.00	3.7	96.3	0.0	0.35	0.53	0.93	0.89	2.13	12470	1374	12	70	4	91	0	logfile
✔	6V3F	21035	2023-04-21	2019-11-25	3.7	3.81	—	3.7	0.007	1.18	0.0	0.07	11.38	0.01	2.285	2.23	1.04	2.4	97.3	0.2	1.13	0.68	0.85	2.46	3.7	0.003	0.66	0.0	0.04	14.11	0.00	2.175	5.79	0.00	3.0	96.9	0.1	1.06	1.01	0.68	0.85	2.06	9855	1234	6	0	19	0	0	logfile
✔	8DLK	27504	2023-04-20	2022-07-08	3.04	3.80	3.14	3.5	0.005	0.86	0.0	0.06	13.51	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.004	0.59	0.0	0.04	15.32	0.00	2.226	9.53	0.00	2.5	97.5	0.0	1.95	1.17	0.82	0.86	2.51	6554	797	4	0	7	0	0	logfile
✔	7TEZ	25856	2023-04-20	2022-01-06	3.27	3.81	—	3.6	0.006	0.90	0.0	0.06	13.44	0.01	2.323	2.50	0.71	1.5	98.5	0.0	0.05	0.79	0.84	2.89	3.6	0.003	0.57	0.0	0.04	15.79	0.00	2.212	7.81	0.00	2.4	97.6	0.0	1.66	0.63	0.81	0.86	1.99	6553	797	4	0	7	0	0	logfile
✔	7VT0	32117	2023-04-21	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.004	0.78	0.0	0.05	15.86	0.00	2.132	10.74	0.00	14.4	84.8	0.8	-3.20	1.20	0.69	0.78	2.83	10536	1326	2	0	0	0	0	logfile
✔	7DZY	30921	2023-04-24	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.83	0.0	0.00	5.21	0.00	2.105	3.02	0.00	10.5	89.3	0.2	-2.46	2.13	0.71	0.70	—	18708	4677	9	0	0	0	0	logfile
✔	6BX3	7303	2023-04-21	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	8CTi	26991	2023-04-20	2022-05-14	3.6	3.83	3.60	3.7	0.011	0.79	0.0	0.04	15.41	0.00	2.164	11.82	0.49	3.1	96.9	0.0	-1.49	0.67	0.63	1.75	3.7	0.003	0.67	0.0	0.04	15.32	0.00	2.196	16.31	0.00	5.0	95.0	0.0	-0.95	2.50	0.70	0.66	1.31	5297	473	3	71	0	0	0	logfile
✔	6CS2	7582	2023-04-28	2018-03-19	4.4	4.80	4.54	4.3	0.007	0.97	0.0	0.06	9.05	0.01	1.972	7.62	0.24	7.0	92.9	0.1	-3.98	0.85	0.82	—	4.3	0.003	0.70	0.0	0.04	11.05	0.00	2.054	13.89	0.00	5.7	94.3	0.0	-1.59	1.23	0.85	0.83	—	27858	3404	34	0	91	0	0	logfile
✔	7oLA	12975	2023-04-25	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	15.07	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.3	0.002	0.49	0.0	0.04	15.96	0.00	1.985	8.52	0.00	2.6	97.4	0.0	1.16	0.89	0.88	0.89	2.86	19719	2394	10	0	7	0	0	logfile

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