Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YVF	34125	2023-08-09	2022-08-19	3.4	3.55	3.27	3.4	0.006	0.76	0.0	0.05	12.39	0.01	2.217	8.73	0.56	7.6	91.9	0.5	-3.93	0.59	0.86	3.79	3.5	0.003	0.69	0.0	0.04	14.43	0.00	2.228	7.48	0.00	6.9	93.1	0.0	-1.70	0.97	0.60	0.88	2.94	3283	425	3	0	0	0	0	logfile
✔	7VAK	31845	2023-08-20	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.27	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	7NVW	12615	2023-08-17	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	6.64	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.003	0.70	0.0	0.04	15.77	0.00	2.146	15.97	0.00	4.7	95.2	0.0	-0.42	1.05	0.73	0.68	—	23647	2814	17	42	35	0	0	logfile
✔	6FU8	4319	2023-08-09	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7WKK	32566	2023-08-22	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	3.8	0.005	0.74	0.0	0.04	5.51	0.00	2.124	3.84	0.00	9.6	90.4	0.0	-0.97	0.64	0.52	0.69	—	92821	18728	30	0	0	0	0	logfile
✔	7PHG	13415	2023-08-10	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.66	0.0	0.04	13.37	0.00	1.921	20.25	0.00	11.6	88.4	0.0	-3.54	1.28	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	7NG4	12307	2023-08-18	2021-02-08	4.4	5.07	4.36	3.9	0.010	1.37	0.0	0.06	13.12	0.01	1.977	6.38	0.12	7.3	92.7	0.0	-2.19	0.89	0.78	—	3.9	0.003	0.57	0.0	0.04	12.78	0.00	1.773	12.19	0.00	4.7	95.3	0.0	-0.92	0.97	0.88	0.79	—	74624	4656	13	0	31	0	37485	logfile
✔	7SAM	24952	2023-08-09	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6GJ3	0010	2023-08-15	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.73	0.0	0.04	12.36	0.01	2.209	10.28	0.00	10.8	89.2	0.0	-1.74	0.76	0.71	0.78	—	17405	2194	7	0	0	0	0	logfile
✔	7Q8S	13865	2023-08-16	2021-11-11	3.4	3.39	3.35	3.3	0.002	0.44	0.0	0.04	8.15	0.00	2.222	3.32	0.23	2.1	97.9	0.0	1.31	0.68	0.86	4.17	3.3	0.003	0.56	0.0	0.05	12.98	0.00	2.140	4.19	0.00	3.2	96.8	0.0	0.86	0.55	0.70	0.89	3.69	19665	2485	15	0	10	0	0	logfile
✔	8Goo	34178	2023-08-14	2022-08-25	4.4	4.74	4.39	4.4	0.004	0.66	0.0	0.04	12.86	0.00	2.221	10.84	0.49	5.0	94.9	0.1	0.57	0.85	0.79	—	4.4	0.006	0.78	0.0	0.05	12.96	0.01	2.078	22.09	0.00	9.1	90.9	0.0	-1.17	1.42	0.86	0.82	—	16966	2223	12	0	0	0	0	logfile
✔	7P05	13144	2023-08-16	2021-06-29	3.13	3.16	—	3.3	0.008	0.87	0.0	0.04	13.66	0.01	1.997	7.44	0.09	4.1	95.9	0.0	0.57	0.66	0.82	3.58	3.3	0.004	0.54	0.0	0.04	14.62	0.00	1.976	5.82	0.00	4.0	96.0	0.0	1.12	0.78	0.67	0.84	3.24	21576	1353	1	0	3	0	10675	logfile
✔	7TAS	25783	2023-08-09	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.50	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.69	0.0	0.04	14.00	0.00	2.248	5.95	0.00	3.7	96.3	0.0	-0.17	0.53	0.65	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	8HAG	34588	2023-08-14	2022-10-26	3.2	3.77	3.22	2.6	0.003	0.56	0.0	0.03	24.87	0.00	2.220	10.62	0.00	1.7	98.3	0.0	2.13	0.85	0.78	0.67	2.4	0.003	0.59	0.0	0.03	26.47	0.00	2.224	10.62	0.00	1.8	98.2	0.0	2.00	1.21	0.89	0.87	1.66	16367	1284	11	294	0	0	0	logfile
✔	8G9L	29871	2023-08-15	2023-02-21	3.3	4.20	3.27	3.5	0.008	0.57	0.0	0.04	18.71	0.00	1.929	2.75	0.00	3.9	96.1	0.0	0.08	0.88	0.82	2.35	3.5	0.003	0.53	0.0	0.04	17.55	0.00	1.469	5.72	0.00	3.0	97.0	0.0	1.87	1.17	0.89	0.85	2.35	17801	1054	7	24	5	0	8774	logfile
✔	8B0i	15784	2023-08-15	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	22.56	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.59	0.0	0.04	20.65	0.00	1.974	14.00	0.00	5.1	94.9	0.0	0.38	1.42	0.80	0.74	—	17636	1075	5	103	0	0	7831	logfile
✔	8SoK	40660	2023-08-24	2023-04-28	4.1	4.25	4.03	4.0	0.005	0.76	0.0	0.09	13.67	0.01	2.084	5.31	1.02	9.8	89.7	0.6	-3.40	0.77	0.67	—	4.0	0.003	0.62	0.0	0.09	13.62	0.00	1.923	8.62	0.00	7.2	92.7	0.1	-1.48	0.65	0.75	0.61	—	37162	2335	8	10	2	0	18588	logfile
✔	8ESB	28574	2023-08-09	2022-10-13	3.12	3.62	3.10	3.5	0.006	0.63	0.0	0.05	14.31	0.00	2.245	5.09	0.00	4.5	95.5	0.0	-2.63	0.67	0.86	3.83	3.5	0.005	0.58	0.0	0.04	16.10	0.00	2.220	4.43	0.00	3.7	96.3	0.0	0.18	0.35	0.67	0.87	3.32	3140	384	3	0	0	0	0	logfile
✔	7Q3U	13795	2023-08-09	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.92	0.0	0.04	18.42	0.01	2.192	28.03	0.00	14.8	85.2	0.0	-6.03	2.22	0.34	0.60	2.69	2355	355	5	0	0	0	0	logfile
✔	7F29	31428	2023-08-09	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	15.69	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.005	0.71	0.0	0.05	17.49	0.00	2.340	5.10	0.00	12.9	87.1	0.0	-2.13	1.15	0.42	0.83	4.62	1794	222	18	0	18	0	0	logfile

• ← previous
• Page 7 of 542
• next →