Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5G5L	3439	2022-12-19	2016-05-26	4.8	5.08	—	4.8	0.010	1.38	14.0	0.09	16.60	0.01	0.675	31.29	7.76	6.0	92.2	1.8	-2.38	0.81	0.71	—	4.8	0.005	0.79	0.0	0.04	13.56	0.00	1.865	22.38	0.00	4.4	95.5	0.1	0.31	2.95	0.86	0.83	—	37349	4686	20	0	7	0	0	logfile
✔	6J51	0676	2022-12-22	2019-01-10	4.2	4.46	—	3.0	0.009	1.21	3.0	0.07	18.81	0.01	1.661	7.48	0.74	4.3	95.0	0.7	-1.68	0.74	0.62	—	3.0	0.003	0.65	0.0	0.04	19.01	0.00	2.031	13.59	0.00	3.9	96.1	0.1	0.72	1.74	0.82	0.77	—	47661	5122	36	337	11	0	0	logfile
✔	4UiS	2974	2022-12-12	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.003	0.80	0.0	0.04	12.02	0.00	2.089	16.52	0.00	10.1	88.5	1.5	-1.41	1.66	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	6DBX	7853	2022-12-13	2018-05-03	4.2	4.39	—	4.2	0.005	0.85	0.0	0.05	20.21	0.00	2.076	20.54	0.00	11.9	88.0	0.2	-4.68	0.81	0.80	—	4.2	0.003	0.73	0.0	0.04	18.11	0.00	1.782	17.39	0.00	6.0	94.0	0.1	-1.34	0.95	0.81	0.83	—	17436	1933	8	100	6	0	0	logfile
✔	6UGF	20763	2022-12-13	2019-09-26	4.2	4.51	—	4.2	0.008	1.11	0.0	0.05	13.93	0.01	2.046	4.71	0.30	6.0	93.9	0.1	-4.55	0.80	0.72	—	4.2	0.005	0.68	0.0	0.04	13.18	0.00	1.789	10.20	0.00	6.0	94.0	0.0	-0.39	0.62	0.85	0.83	—	13874	1862	12	0	9	0	0	logfile
✔	6A69	6987	2022-12-11	2018-06-27	4.11	4.21	—	4.1	0.011	1.47	0.0	0.07	11.85	0.01	2.275	7.57	1.81	13.5	86.4	0.1	-4.69	0.61	0.81	—	4.2	0.003	0.84	0.0	0.04	12.40	0.01	2.186	11.46	0.00	8.4	91.5	0.1	-1.28	1.39	0.59	0.79	—	7851	1038	2	0	1	0	0	logfile
✔	6Q2N	20575	2022-12-13	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.09	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.004	0.85	0.0	0.05	11.77	0.01	2.164	18.65	0.00	10.7	89.2	0.1	-2.73	0.97	0.62	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	3J94	6204	2022-12-14	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.004	0.80	0.0	0.04	13.91	0.01	1.597	17.25	0.00	5.1	94.4	0.6	0.53	2.61	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	6QXE	4666	2022-12-20	2019-03-07	4.15	4.14	—	4.0	0.008	0.92	0.0	0.05	14.95	0.01	1.734	14.58	0.13	7.5	92.3	0.2	-3.74	0.67	0.54	—	4.0	0.005	0.73	0.0	0.04	14.28	0.00	1.850	21.19	0.00	9.8	90.1	0.1	-1.71	1.76	0.77	0.74	—	40460	2626	10	24	0	0	19050	logfile
✔	6DMo	7964	2022-12-12	2018-06-05	4.1	4.16	—	4.1	0.008	1.26	0.0	0.06	13.66	0.01	1.764	8.97	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.84	0.0	0.05	13.76	0.00	2.141	15.26	0.00	11.0	89.0	0.0	-0.54	2.20	0.59	0.72	—	7853	982	3	0	7	0	0	logfile
✔	5YUD	6845	2022-12-12	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.31	0.01	1.301	55.19	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.003	0.86	0.0	0.05	13.26	0.01	2.078	20.59	0.00	11.5	88.0	0.5	-2.55	1.18	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✔	6JNC	9847	2022-12-11	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.48	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.005	0.61	0.0	0.05	15.66	0.00	2.291	5.00	0.00	4.6	95.4	0.0	-1.11	1.56	0.52	0.89	2.22	3294	419	1	0	1	0	0	logfile
✔	6PWC	20505	2022-12-11	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.65	0.0	0.04	6.10	0.00	2.135	11.73	0.00	5.6	94.4	0.0	0.10	1.53	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✔	6KKU	0703	2022-12-12	2019-07-27	3.5	3.59	—	3.6	0.009	1.06	0.0	0.06	10.84	0.01	2.243	2.64	0.00	4.3	95.7	0.0	-3.36	0.60	0.82	3.09	3.6	0.003	0.66	0.0	0.04	14.61	0.00	2.191	6.88	0.00	2.3	97.7	0.0	1.09	1.29	0.61	0.82	1.71	8412	1074	12	0	20	0	0	logfile
✔	6NPJ	0471	2022-12-11	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.23	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.004	0.75	0.0	0.05	17.34	0.00	2.174	11.41	0.00	8.0	92.0	0.0	-2.17	0.84	0.63	0.79	2.19	6186	768	2	0	0	0	0	logfile
✔	6NT5	0502	2022-12-11	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.81	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.52	0.00	2.325	7.08	0.00	2.0	98.0	0.0	1.95	1.16	0.73	0.81	—	4586	584	2	0	0	0	0	logfile
✔	3JAC	6343	2022-12-13	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.91	0.01	1.933	77.25	0.00	27.5	71.1	1.4	-5.52	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	6FN4	4282	2022-12-12	2018-02-02	4.14	4.24	—	4.2	0.005	0.80	0.0	0.05	9.96	0.01	2.096	8.91	0.00	7.5	91.3	1.2	-2.94	0.68	0.75	—	4.2	0.003	0.71	0.0	0.04	12.44	0.00	2.166	9.85	0.00	4.1	95.8	0.1	-0.10	1.65	0.71	0.76	—	12702	1626	4	0	4	0	0	logfile
✔	6QVU	4657	2022-12-12	2019-03-05	4.2	6.05	4.20	6.9	0.006	1.30	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	6.9	0.003	0.89	0.0	0.05	11.35	0.01	2.187	17.52	0.00	7.3	92.7	0.0	-0.50	1.39	0.66	0.76	—	9272	1198	2	0	0	0	0	logfile
✔	3J1B	5391	2022-12-12	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.78	0.0	0.05	14.62	0.01	2.174	15.69	0.00	4.8	94.6	0.6	0.77	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile

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