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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5G5L | 3439 | 2022-12-19 | 2016-05-26 | 4.8 | 5.08 | — | 4.8 | 0.010 | 1.38 | 14.0 | 0.09 | 16.60 | 0.01 | 0.675 | 31.29 | 7.76 | 6.0 | 92.2 | 1.8 | -2.38 | 0.81 | 0.71 | — | 4.8 | 0.005 | 0.79 | 0.0 | 0.04 | 13.56 | 0.00 | 1.865 | 22.38 | 0.00 | 4.4 | 95.5 | 0.1 | 0.31 | 2.95 | 0.86 | 0.83 | — | 37349 | 4686 | 20 | 0 | 7 | 0 | 0 | logfile |
✔ | 6J51 | 0676 | 2022-12-22 | 2019-01-10 | 4.2 | 4.46 | — | 3.0 | 0.009 | 1.21 | 3.0 | 0.07 | 18.81 | 0.01 | 1.661 | 7.48 | 0.74 | 4.3 | 95.0 | 0.7 | -1.68 | 0.74 | 0.62 | — | 3.0 | 0.003 | 0.65 | 0.0 | 0.04 | 19.01 | 0.00 | 2.031 | 13.59 | 0.00 | 3.9 | 96.1 | 0.1 | 0.72 | 1.74 | 0.82 | 0.77 | — | 47661 | 5122 | 36 | 337 | 11 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2022-12-12 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.003 | 0.80 | 0.0 | 0.04 | 12.02 | 0.00 | 2.089 | 16.52 | 0.00 | 10.1 | 88.5 | 1.5 | -1.41 | 1.66 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 6DBX | 7853 | 2022-12-13 | 2018-05-03 | 4.2 | 4.39 | — | 4.2 | 0.005 | 0.85 | 0.0 | 0.05 | 20.21 | 0.00 | 2.076 | 20.54 | 0.00 | 11.9 | 88.0 | 0.2 | -4.68 | 0.81 | 0.80 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 18.11 | 0.00 | 1.782 | 17.39 | 0.00 | 6.0 | 94.0 | 0.1 | -1.34 | 0.95 | 0.81 | 0.83 | — | 17436 | 1933 | 8 | 100 | 6 | 0 | 0 | logfile |
✔ | 6UGF | 20763 | 2022-12-13 | 2019-09-26 | 4.2 | 4.51 | — | 4.2 | 0.008 | 1.11 | 0.0 | 0.05 | 13.93 | 0.01 | 2.046 | 4.71 | 0.30 | 6.0 | 93.9 | 0.1 | -4.55 | 0.80 | 0.72 | — | 4.2 | 0.005 | 0.68 | 0.0 | 0.04 | 13.18 | 0.00 | 1.789 | 10.20 | 0.00 | 6.0 | 94.0 | 0.0 | -0.39 | 0.62 | 0.85 | 0.83 | — | 13874 | 1862 | 12 | 0 | 9 | 0 | 0 | logfile |
✔ | 6A69 | 6987 | 2022-12-11 | 2018-06-27 | 4.11 | 4.21 | — | 4.1 | 0.011 | 1.47 | 0.0 | 0.07 | 11.85 | 0.01 | 2.275 | 7.57 | 1.81 | 13.5 | 86.4 | 0.1 | -4.69 | 0.61 | 0.81 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.04 | 12.40 | 0.01 | 2.186 | 11.46 | 0.00 | 8.4 | 91.5 | 0.1 | -1.28 | 1.39 | 0.59 | 0.79 | — | 7851 | 1038 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6Q2N | 20575 | 2022-12-13 | 2019-08-08 | 4.4 | 4.43 | — | 4.3 | 0.008 | 1.24 | 0.0 | 0.06 | 9.78 | 0.01 | 1.449 | 11.09 | 0.68 | 9.6 | 90.2 | 0.2 | -4.25 | 0.60 | 0.56 | — | 4.3 | 0.004 | 0.85 | 0.0 | 0.05 | 11.77 | 0.01 | 2.164 | 18.65 | 0.00 | 10.7 | 89.2 | 0.1 | -2.73 | 0.97 | 0.62 | 0.58 | — | 13140 | 1678 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 3J94 | 6204 | 2022-12-14 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.96 | 0.0 | 0.07 | 15.84 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.7 | 0.004 | 0.80 | 0.0 | 0.04 | 13.91 | 0.01 | 1.597 | 17.25 | 0.00 | 5.1 | 94.4 | 0.6 | 0.53 | 2.61 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 6QXE | 4666 | 2022-12-20 | 2019-03-07 | 4.15 | 4.14 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 14.95 | 0.01 | 1.734 | 14.58 | 0.13 | 7.5 | 92.3 | 0.2 | -3.74 | 0.67 | 0.54 | — | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 14.28 | 0.00 | 1.850 | 21.19 | 0.00 | 9.8 | 90.1 | 0.1 | -1.71 | 1.76 | 0.77 | 0.74 | — | 40460 | 2626 | 10 | 24 | 0 | 0 | 19050 | logfile |
✔ | 6DMo | 7964 | 2022-12-12 | 2018-06-05 | 4.1 | 4.16 | — | 4.1 | 0.008 | 1.26 | 0.0 | 0.06 | 13.66 | 0.01 | 1.764 | 8.97 | 2.78 | 11.1 | 88.6 | 0.3 | -4.11 | 0.55 | 0.64 | — | 4.1 | 0.003 | 0.84 | 0.0 | 0.05 | 13.76 | 0.00 | 2.141 | 15.26 | 0.00 | 11.0 | 89.0 | 0.0 | -0.54 | 2.20 | 0.59 | 0.72 | — | 7853 | 982 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 5YUD | 6845 | 2022-12-12 | 2017-11-21 | 4.28 | 4.47 | — | 4.3 | 0.008 | 1.31 | 0.0 | 0.06 | 10.31 | 0.01 | 1.301 | 55.19 | 0.17 | 16.1 | 82.8 | 1.1 | -5.50 | 0.76 | 0.74 | — | 4.3 | 0.003 | 0.86 | 0.0 | 0.05 | 13.26 | 0.01 | 2.078 | 20.59 | 0.00 | 11.5 | 88.0 | 0.5 | -2.55 | 1.18 | 0.77 | 0.78 | — | 10510 | 1313 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2022-12-11 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.48 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.005 | 0.61 | 0.0 | 0.05 | 15.66 | 0.00 | 2.291 | 5.00 | 0.00 | 4.6 | 95.4 | 0.0 | -1.11 | 1.56 | 0.52 | 0.89 | 2.22 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PWC | 20505 | 2022-12-11 | 2019-07-22 | 4.9 | 5.55 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.05 | 4.68 | 0.01 | 2.345 | 2.19 | 0.00 | 1.3 | 98.7 | 0.0 | -0.09 | 0.61 | 0.67 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 6.10 | 0.00 | 2.135 | 11.73 | 0.00 | 5.6 | 94.4 | 0.0 | 0.10 | 1.53 | 0.61 | 0.58 | — | 5879 | 1055 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KKU | 0703 | 2022-12-12 | 2019-07-27 | 3.5 | 3.59 | — | 3.6 | 0.009 | 1.06 | 0.0 | 0.06 | 10.84 | 0.01 | 2.243 | 2.64 | 0.00 | 4.3 | 95.7 | 0.0 | -3.36 | 0.60 | 0.82 | 3.09 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.61 | 0.00 | 2.191 | 6.88 | 0.00 | 2.3 | 97.7 | 0.0 | 1.09 | 1.29 | 0.61 | 0.82 | 1.71 | 8412 | 1074 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 6NPJ | 0471 | 2022-12-11 | 2019-01-17 | 3.8 | 3.73 | — | 3.7 | 0.008 | 1.24 | 0.0 | 0.07 | 17.12 | 0.01 | 2.246 | 7.23 | 6.25 | 8.8 | 91.2 | 0.0 | -5.64 | 0.62 | 0.77 | 2.47 | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 17.34 | 0.00 | 2.174 | 11.41 | 0.00 | 8.0 | 92.0 | 0.0 | -2.17 | 0.84 | 0.63 | 0.79 | 2.19 | 6186 | 768 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NT5 | 0502 | 2022-12-11 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.81 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | 4.1 | 0.002 | 0.57 | 0.0 | 0.04 | 12.52 | 0.00 | 2.325 | 7.08 | 0.00 | 2.0 | 98.0 | 0.0 | 1.95 | 1.16 | 0.73 | 0.81 | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2022-12-13 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.72 | 0.0 | 0.06 | 13.91 | 0.01 | 1.933 | 77.25 | 0.00 | 27.5 | 71.1 | 1.4 | -5.52 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 6FN4 | 4282 | 2022-12-12 | 2018-02-02 | 4.14 | 4.24 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 9.96 | 0.01 | 2.096 | 8.91 | 0.00 | 7.5 | 91.3 | 1.2 | -2.94 | 0.68 | 0.75 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 12.44 | 0.00 | 2.166 | 9.85 | 0.00 | 4.1 | 95.8 | 0.1 | -0.10 | 1.65 | 0.71 | 0.76 | — | 12702 | 1626 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6QVU | 4657 | 2022-12-12 | 2019-03-05 | 4.2 | 6.05 | 4.20 | 6.9 | 0.006 | 1.30 | 0.0 | 0.06 | 12.34 | 0.01 | 2.191 | 10.73 | 1.99 | 9.3 | 90.7 | 0.0 | -4.21 | 0.65 | 0.75 | — | 6.9 | 0.003 | 0.89 | 0.0 | 0.05 | 11.35 | 0.01 | 2.187 | 17.52 | 0.00 | 7.3 | 92.7 | 0.0 | -0.50 | 1.39 | 0.66 | 0.76 | — | 9272 | 1198 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-12-12 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.76 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.78 | 0.0 | 0.05 | 14.62 | 0.01 | 2.174 | 15.69 | 0.00 | 4.8 | 94.6 | 0.6 | 0.77 | 2.25 | 0.79 | 0.70 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |