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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YVF | 34125 | 2023-08-09 | 2022-08-19 | 3.4 | 3.55 | 3.27 | 3.4 | 0.006 | 0.76 | 0.0 | 0.05 | 12.39 | 0.01 | 2.217 | 8.73 | 0.56 | 7.6 | 91.9 | 0.5 | -3.93 | 0.59 | 0.86 | 3.79 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.43 | 0.00 | 2.228 | 7.48 | 0.00 | 6.9 | 93.1 | 0.0 | -1.70 | 0.97 | 0.60 | 0.88 | 2.94 | 3283 | 425 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VAK | 31845 | 2023-08-20 | 2021-08-30 | 4.7 | 3.87 | 4.25 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.32 | 0.00 | 2.115 | 9.01 | 0.00 | 2.9 | 97.1 | 0.0 | 0.43 | 0.71 | 0.75 | — | 3.8 | 0.004 | 0.68 | 0.0 | 0.05 | 14.06 | 0.00 | 2.126 | 11.27 | 0.00 | 4.7 | 95.3 | 0.0 | -0.10 | 1.25 | 0.72 | 0.77 | — | 29462 | 3788 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NVW | 12615 | 2023-08-17 | 2021-03-16 | 4.3 | 4.32 | 4.26 | 4.2 | 0.002 | 0.45 | 0.0 | 0.04 | 15.45 | 0.00 | 1.971 | 6.64 | 0.00 | 4.4 | 95.6 | 0.0 | 0.80 | 0.71 | 0.66 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.77 | 0.00 | 2.146 | 15.97 | 0.00 | 4.7 | 95.2 | 0.0 | -0.42 | 1.05 | 0.73 | 0.68 | — | 23647 | 2814 | 17 | 42 | 35 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-08-09 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7WKK | 32566 | 2023-08-22 | 2022-01-10 | 4.2 | 4.30 | — | 3.9 | 0.006 | 0.63 | 0.0 | 0.04 | 4.94 | 0.00 | 2.138 | 2.83 | 0.00 | 4.7 | 95.2 | 0.1 | -2.36 | 0.46 | 0.60 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 5.51 | 0.00 | 2.124 | 3.84 | 0.00 | 9.6 | 90.4 | 0.0 | -0.97 | 0.64 | 0.52 | 0.69 | — | 92821 | 18728 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PHG | 13415 | 2023-08-10 | 2021-08-17 | 4.3 | 4.13 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 13.71 | 0.00 | 1.916 | 18.40 | 0.00 | 11.9 | 88.1 | 0.0 | -3.68 | 0.78 | 0.67 | — | 4.0 | 0.004 | 0.66 | 0.0 | 0.04 | 13.37 | 0.00 | 1.921 | 20.25 | 0.00 | 11.6 | 88.4 | 0.0 | -3.54 | 1.28 | 0.78 | 0.67 | — | 6469 | 427 | 3 | 0 | 0 | 0 | 3160 | logfile |
✔ | 7NG4 | 12307 | 2023-08-18 | 2021-02-08 | 4.4 | 5.07 | 4.36 | 3.9 | 0.010 | 1.37 | 0.0 | 0.06 | 13.12 | 0.01 | 1.977 | 6.38 | 0.12 | 7.3 | 92.7 | 0.0 | -2.19 | 0.89 | 0.78 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 12.78 | 0.00 | 1.773 | 12.19 | 0.00 | 4.7 | 95.3 | 0.0 | -0.92 | 0.97 | 0.88 | 0.79 | — | 74624 | 4656 | 13 | 0 | 31 | 0 | 37485 | logfile |
✔ | 7SAM | 24952 | 2023-08-09 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6GJ3 | 0010 | 2023-08-15 | 2018-05-15 | 4.3 | 4.02 | — | 3.9 | 0.008 | 1.19 | 0.0 | 0.06 | 10.34 | 0.01 | 2.248 | 5.14 | 0.37 | 13.5 | 86.2 | 0.3 | -4.76 | 0.71 | 0.78 | — | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 12.36 | 0.01 | 2.209 | 10.28 | 0.00 | 10.8 | 89.2 | 0.0 | -1.74 | 0.76 | 0.71 | 0.78 | — | 17405 | 2194 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q8S | 13865 | 2023-08-16 | 2021-11-11 | 3.4 | 3.39 | 3.35 | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 8.15 | 0.00 | 2.222 | 3.32 | 0.23 | 2.1 | 97.9 | 0.0 | 1.31 | 0.68 | 0.86 | 4.17 | 3.3 | 0.003 | 0.56 | 0.0 | 0.05 | 12.98 | 0.00 | 2.140 | 4.19 | 0.00 | 3.2 | 96.8 | 0.0 | 0.86 | 0.55 | 0.70 | 0.89 | 3.69 | 19665 | 2485 | 15 | 0 | 10 | 0 | 0 | logfile |
✔ | 8Goo | 34178 | 2023-08-14 | 2022-08-25 | 4.4 | 4.74 | 4.39 | 4.4 | 0.004 | 0.66 | 0.0 | 0.04 | 12.86 | 0.00 | 2.221 | 10.84 | 0.49 | 5.0 | 94.9 | 0.1 | 0.57 | 0.85 | 0.79 | — | 4.4 | 0.006 | 0.78 | 0.0 | 0.05 | 12.96 | 0.01 | 2.078 | 22.09 | 0.00 | 9.1 | 90.9 | 0.0 | -1.17 | 1.42 | 0.86 | 0.82 | — | 16966 | 2223 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P05 | 13144 | 2023-08-16 | 2021-06-29 | 3.13 | 3.16 | — | 3.3 | 0.008 | 0.87 | 0.0 | 0.04 | 13.66 | 0.01 | 1.997 | 7.44 | 0.09 | 4.1 | 95.9 | 0.0 | 0.57 | 0.66 | 0.82 | 3.58 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 14.62 | 0.00 | 1.976 | 5.82 | 0.00 | 4.0 | 96.0 | 0.0 | 1.12 | 0.78 | 0.67 | 0.84 | 3.24 | 21576 | 1353 | 1 | 0 | 3 | 0 | 10675 | logfile |
✔ | 7TAS | 25783 | 2023-08-09 | 2021-12-21 | 3.2 | 3.49 | 3.25 | 3.4 | 0.013 | 1.50 | 0.0 | 0.09 | 11.50 | 0.01 | 2.452 | 3.63 | 1.69 | 3.9 | 96.1 | 0.0 | -1.01 | 0.68 | 0.83 | 4.31 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 14.00 | 0.00 | 2.248 | 5.95 | 0.00 | 3.7 | 96.3 | 0.0 | -0.17 | 0.53 | 0.65 | 0.86 | 4.26 | 3147 | 417 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 8HAG | 34588 | 2023-08-14 | 2022-10-26 | 3.2 | 3.77 | 3.22 | 2.6 | 0.003 | 0.56 | 0.0 | 0.03 | 24.87 | 0.00 | 2.220 | 10.62 | 0.00 | 1.7 | 98.3 | 0.0 | 2.13 | 0.85 | 0.78 | 0.67 | 2.4 | 0.003 | 0.59 | 0.0 | 0.03 | 26.47 | 0.00 | 2.224 | 10.62 | 0.00 | 1.8 | 98.2 | 0.0 | 2.00 | 1.21 | 0.89 | 0.87 | 1.66 | 16367 | 1284 | 11 | 294 | 0 | 0 | 0 | logfile |
✔ | 8G9L | 29871 | 2023-08-15 | 2023-02-21 | 3.3 | 4.20 | 3.27 | 3.5 | 0.008 | 0.57 | 0.0 | 0.04 | 18.71 | 0.00 | 1.929 | 2.75 | 0.00 | 3.9 | 96.1 | 0.0 | 0.08 | 0.88 | 0.82 | 2.35 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 17.55 | 0.00 | 1.469 | 5.72 | 0.00 | 3.0 | 97.0 | 0.0 | 1.87 | 1.17 | 0.89 | 0.85 | 2.35 | 17801 | 1054 | 7 | 24 | 5 | 0 | 8774 | logfile |
✔ | 8B0i | 15784 | 2023-08-15 | 2022-09-07 | 4.28 | 5.23 | 4.35 | 4.5 | 0.012 | 1.98 | 1.0 | 0.11 | 22.56 | 0.01 | 1.911 | 8.92 | 0.14 | 5.1 | 94.9 | 0.0 | -1.62 | 0.77 | 0.61 | — | 4.5 | 0.002 | 0.59 | 0.0 | 0.04 | 20.65 | 0.00 | 1.974 | 14.00 | 0.00 | 5.1 | 94.9 | 0.0 | 0.38 | 1.42 | 0.80 | 0.74 | — | 17636 | 1075 | 5 | 103 | 0 | 0 | 7831 | logfile |
✔ | 8SoK | 40660 | 2023-08-24 | 2023-04-28 | 4.1 | 4.25 | 4.03 | 4.0 | 0.005 | 0.76 | 0.0 | 0.09 | 13.67 | 0.01 | 2.084 | 5.31 | 1.02 | 9.8 | 89.7 | 0.6 | -3.40 | 0.77 | 0.67 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.09 | 13.62 | 0.00 | 1.923 | 8.62 | 0.00 | 7.2 | 92.7 | 0.1 | -1.48 | 0.65 | 0.75 | 0.61 | — | 37162 | 2335 | 8 | 10 | 2 | 0 | 18588 | logfile |
✔ | 8ESB | 28574 | 2023-08-09 | 2022-10-13 | 3.12 | 3.62 | 3.10 | 3.5 | 0.006 | 0.63 | 0.0 | 0.05 | 14.31 | 0.00 | 2.245 | 5.09 | 0.00 | 4.5 | 95.5 | 0.0 | -2.63 | 0.67 | 0.86 | 3.83 | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 16.10 | 0.00 | 2.220 | 4.43 | 0.00 | 3.7 | 96.3 | 0.0 | 0.18 | 0.35 | 0.67 | 0.87 | 3.32 | 3140 | 384 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q3U | 13795 | 2023-08-09 | 2021-10-28 | 3.7 | 3.43 | 3.48 | 4.1 | 0.005 | 1.17 | 0.0 | 0.05 | 16.84 | 0.01 | 2.120 | 36.48 | 0.00 | 10.7 | 89.3 | 0.0 | -5.79 | 0.23 | 0.47 | 0.88 | 4.0 | 0.004 | 0.92 | 0.0 | 0.04 | 18.42 | 0.01 | 2.192 | 28.03 | 0.00 | 14.8 | 85.2 | 0.0 | -6.03 | 2.22 | 0.34 | 0.60 | 2.69 | 2355 | 355 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F29 | 31428 | 2023-08-09 | 2021-06-10 | 3.1 | 3.08 | — | 3.2 | 0.014 | 1.07 | 0.0 | 0.06 | 15.69 | 0.00 | 2.305 | 11.88 | 0.00 | 14.3 | 85.7 | 0.0 | -3.96 | 0.42 | 0.83 | 5.02 | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 17.49 | 0.00 | 2.340 | 5.10 | 0.00 | 12.9 | 87.1 | 0.0 | -2.13 | 1.15 | 0.42 | 0.83 | 4.62 | 1794 | 222 | 18 | 0 | 18 | 0 | 0 | logfile |