Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E3C	30979	2023-07-03	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	6oEQ	20034	2023-07-09	2019-03-27	4.3	4.55	—	4.3	0.009	1.05	0.0	0.06	22.94	0.01	1.742	8.94	0.62	8.7	91.2	0.1	-4.02	0.88	0.82	—	4.3	0.003	0.65	0.0	0.04	21.80	0.00	1.986	13.74	0.00	5.9	94.1	0.1	-1.25	1.23	0.88	0.81	—	19134	1910	10	206	4	0	0	logfile
✔	7BWD	30232	2023-07-10	2020-04-14	4.32	4.37	—	4.3	0.009	0.93	0.0	0.05	26.44	0.01	1.348	6.94	2.98	6.3	93.7	0.0	-5.07	0.80	0.80	—	4.3	0.007	0.75	0.0	0.04	26.14	0.00	2.005	16.20	0.00	7.1	92.9	0.0	-1.81	1.68	0.80	0.79	—	16042	1257	14	292	0	0	0	logfile
✔	7EKi	31168	2023-07-08	2021-04-05	3.18	3.70	—	3.6	0.005	0.63	0.0	0.06	12.31	0.00	2.230	5.79	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.002	0.53	0.0	0.04	13.89	0.00	2.185	4.91	0.00	4.6	95.4	0.0	-0.37	0.39	0.70	0.83	2.37	16005	1975	15	0	20	0	0	logfile
✔	5LJo	4061	2023-07-11	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.70	0.0	0.04	12.76	0.00	1.923	18.84	0.00	12.3	87.3	0.4	-2.48	1.32	0.80	0.80	—	24947	1624	5	0	0	0	12255	logfile
✔	8B8T	15921	2023-07-04	2022-10-05	4.2	3.64	4.09	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.0	0.008	0.97	0.0	0.05	13.59	0.01	2.070	11.18	0.00	5.9	94.1	0.0	-0.32	0.52	0.74	0.78	—	7180	989	4	0	0	0	0	logfile
✔	6XRE	22294	2023-07-09	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.46	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	7JL0	22368	2023-07-06	2020-07-29	4.3	3.67	—	4.0	0.008	1.40	1.0	0.05	14.11	0.00	1.860	13.62	0.14	6.6	93.4	0.0	-1.52	0.75	0.77	—	4.1	0.003	0.93	0.0	0.04	14.14	0.00	1.822	11.82	0.00	4.8	95.2	0.0	-0.07	2.52	0.77	0.80	—	7354	842	5	28	4	0	0	logfile
✔	6X13	21987	2023-07-03	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.003	0.66	0.0	0.04	16.00	0.00	2.254	8.98	0.00	5.3	94.7	0.0	1.35	0.42	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	5oA1	3727	2023-07-18	2017-06-20	4.4	5.36	—	4.5	0.027	1.76	1.0	0.07	19.15	0.01	0.473	26.25	8.67	5.4	93.4	1.2	-1.92	0.70	0.49	—	4.6	0.012	0.85	0.0	0.05	15.81	0.01	2.042	30.09	0.00	6.4	93.4	0.2	-0.18	3.30	0.78	0.66	—	43459	5668	39	105	7	0	0	logfile
✔	6Qi9	4553	2023-07-07	2019-01-18	4.63	4.71	—	4.6	0.007	1.09	0.0	0.06	17.10	0.01	1.993	10.33	0.39	9.0	91.0	0.0	-4.28	0.82	0.82	—	4.6	0.003	0.74	0.0	0.04	15.19	0.00	2.104	13.67	0.00	6.7	93.3	0.0	-1.28	0.80	0.82	0.80	—	14559	1879	11	0	5	0	0	logfile
✔	6XTB	10618	2023-07-03	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6K9L	9950	2023-07-14	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.22	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	7XZX	33533	2023-07-09	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	7WB1	32392	2023-07-06	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	19.51	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.003	0.61	0.0	0.04	20.37	0.00	2.084	14.67	0.00	5.2	94.8	0.0	0.33	1.01	0.83	0.76	1.29	11524	960	4	178	0	0	0	logfile
✔	7EoQ	31227	2023-07-11	2021-04-22	4.1	4.43	—	4.1	0.002	0.47	0.0	0.04	10.23	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.58	0.0	0.04	11.24	0.00	2.184	12.47	0.00	6.4	93.6	0.0	-0.51	1.21	0.88	0.78	—	24742	3144	8	0	10	0	0	logfile
✔	6J5A	0670	2023-07-04	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	12.84	0.00	2.192	10.27	0.00	8.6	91.4	0.0	-1.31	1.18	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	7R6M	24282	2023-07-04	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7EU8	31309	2023-07-09	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	7.80	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.62	0.0	0.06	8.46	0.00	2.129	7.57	0.00	3.8	96.0	0.2	0.14	1.37	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	8oNT	17000	2023-07-03	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.01	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.54	0.0	0.04	15.80	0.00	2.083	7.87	0.00	5.6	94.4	0.0	1.77	0.33	0.63	0.77	1.05	4316	558	3	0	1	1	0	logfile

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