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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6D83 | 7453 | 2024-03-17 | 2018-04-25 | 4.27 | 4.38 | — | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 11.34 | 0.01 | 1.904 | 6.11 | 0.05 | 5.0 | 94.9 | 0.0 | -4.30 | 0.80 | 0.76 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 13.81 | 0.00 | 1.936 | 18.68 | 0.00 | 4.8 | 95.2 | 0.0 | -0.85 | 1.06 | 0.81 | 0.79 | — | 16588 | 2063 | 10 | 0 | 4 | 0 | 0 | logfile |
✔ | 6oRP | 20177 | 2024-03-18 | 2019-04-30 | 4.4 | 4.68 | 4.45 | 4.7 | 0.010 | 1.62 | 7.0 | 0.10 | 18.02 | 0.02 | 1.539 | 13.72 | 1.05 | 15.8 | 83.7 | 0.4 | -4.88 | 0.46 | 0.61 | — | 4.7 | 0.004 | 0.91 | 0.0 | 0.05 | 13.92 | 0.00 | 2.040 | 16.44 | 0.00 | 14.3 | 85.7 | 0.0 | -3.34 | 0.92 | 0.60 | 0.81 | — | 19972 | 2397 | 47 | 0 | 98 | 0 | 0 | logfile |
✔ | 7XD6 | 33137 | 2024-03-14 | 2022-03-26 | 2.84 | 3.25 | 2.83 | 3.0 | 0.005 | 0.74 | 0.0 | 0.04 | 23.79 | 0.00 | 1.975 | 1.30 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.86 | — | 3.1 | 0.005 | 0.68 | 0.0 | 0.04 | 23.96 | 0.00 | 1.878 | 7.75 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.32 | 0.88 | 0.89 | — | 9843 | 0 | 3 | 459 | 29 | 0 | 0 | logfile |
✔ | 6ZNN | 11318 | 2024-03-18 | 2020-07-06 | 4.5 | 5.10 | 4.05 | 4.4 | 0.014 | 1.77 | 0.0 | 0.09 | 13.32 | 0.00 | 1.790 | 1.74 | 0.00 | 7.7 | 92.2 | 0.1 | -3.13 | 0.78 | 0.72 | — | 4.4 | 0.004 | 0.71 | 0.0 | 0.04 | 13.02 | 0.00 | 2.034 | 17.33 | 0.00 | 5.4 | 94.5 | 0.1 | -0.22 | 0.99 | 0.81 | 0.82 | — | 19457 | 2320 | 17 | 0 | 328 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2024-03-10 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.85 | 0.0 | 0.04 | 5.41 | 0.00 | 2.334 | 6.19 | 0.00 | 9.6 | 90.4 | 0.0 | -1.73 | 1.59 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oHY | 20074 | 2024-03-16 | 2019-04-08 | 4.1 | 4.28 | 4.05 | 4.2 | 0.008 | 1.11 | 0.0 | 0.07 | 14.53 | 0.01 | 2.288 | 4.35 | 0.40 | 10.5 | 88.9 | 0.5 | -3.30 | 0.79 | 0.79 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.05 | 11.90 | 0.00 | 2.203 | 9.80 | 0.00 | 10.6 | 89.3 | 0.1 | -1.97 | 1.22 | 0.80 | 0.81 | — | 15192 | 1701 | 54 | 0 | 126 | 0 | 0 | logfile |
✔ | 7PFV | 13381 | 2024-03-16 | 2021-08-12 | 4.4 | 7.43 | — | 4.1 | 0.006 | 0.86 | 0.0 | 0.05 | 30.43 | 0.01 | 2.249 | 7.20 | 0.00 | 1.2 | 98.8 | 0.0 | 0.36 | 0.91 | 0.85 | — | 4.1 | 0.005 | 0.64 | 0.0 | 0.04 | 29.81 | 0.00 | 2.172 | 22.11 | 0.00 | 2.3 | 97.7 | 0.0 | 2.09 | 0.62 | 0.91 | 0.86 | — | 13880 | 843 | 11 | 354 | 0 | 0 | 0 | logfile |
✔ | 7STi | 25429 | 2024-03-17 | 2021-11-13 | 4.9 | 6.34 | — | 4.3 | 0.004 | 0.67 | 0.0 | 0.04 | 13.50 | 0.00 | 2.001 | 25.75 | 0.20 | 7.8 | 92.0 | 0.2 | -1.35 | 0.89 | 0.83 | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.50 | 0.00 | 2.091 | 26.35 | 0.00 | 9.4 | 90.4 | 0.1 | -1.26 | 1.59 | 0.89 | 0.84 | — | 13531 | 1678 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXC | 9893 | 2024-03-16 | 2019-04-23 | 4.1 | 4.20 | — | 4.1 | 0.018 | 1.71 | 0.0 | 0.09 | 8.99 | 0.01 | 2.221 | 4.77 | 0.38 | 9.3 | 87.7 | 3.0 | -1.28 | 0.50 | 0.61 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.04 | 12.11 | 0.00 | 2.106 | 10.45 | 0.00 | 11.6 | 86.4 | 2.0 | 0.22 | 0.97 | 0.55 | 0.69 | — | 15270 | 2345 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Vo3 | 21258 | 2024-03-18 | 2020-01-29 | 4.25 | 4.75 | — | 4.5 | 0.019 | 1.84 | 0.0 | 0.11 | 15.59 | 0.01 | 2.385 | 1.91 | 0.44 | 3.8 | 95.7 | 0.5 | 0.21 | 0.75 | 0.75 | — | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 13.04 | 0.00 | 2.076 | 20.20 | 0.00 | 7.1 | 92.6 | 0.3 | -0.51 | 1.14 | 0.76 | 0.79 | — | 19554 | 2334 | 39 | 0 | 78 | 0 | 0 | logfile |
✔ | 7PEW | 13359 | 2024-03-16 | 2021-08-11 | 4.6 | 5.68 | — | 4.1 | 0.006 | 0.91 | 0.0 | 0.05 | 30.19 | 0.01 | 2.249 | 5.53 | 0.00 | 1.1 | 98.9 | 0.0 | -0.20 | 0.89 | 0.85 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 29.58 | 0.00 | 2.170 | 19.67 | 0.00 | 2.4 | 97.6 | 0.0 | 1.56 | 1.21 | 0.89 | 0.86 | — | 13304 | 768 | 10 | 352 | 0 | 0 | 0 | logfile |
✔ | 7K7G | 22698 | 2024-03-15 | 2020-09-22 | 4.2 | 4.83 | — | 4.1 | 0.008 | 1.03 | 0.0 | 0.06 | 29.99 | 0.01 | 2.251 | 7.76 | 0.00 | 4.1 | 95.9 | 0.0 | -1.83 | 0.87 | 0.81 | — | 4.1 | 0.005 | 0.68 | 0.0 | 0.04 | 28.44 | 0.00 | 2.108 | 18.60 | 0.00 | 4.8 | 95.2 | 0.0 | 0.31 | 1.74 | 0.87 | 0.81 | — | 11098 | 766 | 11 | 246 | 2 | 0 | 0 | logfile |
✔ | 6oUA | 20200 | 2024-03-10 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | 4.3 | 0.003 | 0.84 | 0.0 | 0.05 | 14.33 | 0.00 | 2.171 | 10.55 | 0.00 | 12.5 | 87.5 | 0.0 | -1.88 | 1.15 | 0.71 | 0.76 | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2024-03-10 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 22.57 | 0.00 | 2.251 | 5.08 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.008 | 0.75 | 0.0 | 0.04 | 23.50 | 0.01 | 1.960 | 31.37 | 0.00 | 10.4 | 89.4 | 0.2 | -2.53 | 1.69 | 0.91 | 0.87 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6UW9 | 20920 | 2024-03-17 | 2019-11-04 | 4.33 | 4.42 | — | 4.3 | 0.005 | 1.14 | 0.0 | 0.06 | 15.43 | 0.01 | 1.932 | 8.33 | 0.20 | 7.3 | 92.7 | 0.0 | -4.94 | 0.67 | 0.79 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 14.90 | 0.00 | 2.106 | 9.96 | 0.00 | 6.8 | 93.2 | 0.0 | -0.40 | 0.73 | 0.67 | 0.79 | — | 18924 | 2328 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S9B | 24931 | 2024-03-15 | 2021-09-20 | 4.2 | 4.16 | — | 4.0 | 0.006 | 0.82 | 0.0 | 0.05 | 11.72 | 0.00 | 2.213 | 19.98 | 0.78 | 9.9 | 89.8 | 0.3 | -0.99 | 0.61 | 0.81 | — | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 11.71 | 0.00 | 2.232 | 11.03 | 0.00 | 7.8 | 92.1 | 0.1 | 0.56 | 0.41 | 0.60 | 0.80 | — | 10458 | 1356 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QWL | 4660 | 2024-03-15 | 2019-03-05 | 4.1 | 4.22 | — | 4.1 | 0.008 | 1.01 | 0.0 | 0.06 | 17.05 | 0.01 | 2.214 | 10.07 | 0.93 | 10.8 | 89.1 | 0.1 | -4.69 | 0.75 | 0.74 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.87 | 0.00 | 2.149 | 14.26 | 0.00 | 6.4 | 93.6 | 0.0 | -1.46 | 2.24 | 0.75 | 0.73 | — | 10408 | 1244 | 5 | 26 | 0 | 0 | 0 | logfile |
✔ | 5LMT | 4079 | 2024-03-11 | 2016-08-01 | 4.15 | 4.33 | 4.20 | 4.2 | 0.008 | 1.43 | 21.0 | 0.12 | 26.59 | 0.02 | 1.290 | 18.78 | 22.35 | 11.9 | 84.8 | 3.3 | -2.73 | 0.77 | 0.76 | — | 4.1 | 0.005 | 0.77 | 0.0 | 0.04 | 24.06 | 0.01 | 1.817 | 28.66 | 0.00 | 8.8 | 90.9 | 0.3 | -1.49 | 1.60 | 0.80 | 0.83 | — | 55776 | 2622 | 31 | 1612 | 88 | 0 | 0 | logfile |
✔ | 7UWA | 26826 | 2024-03-25 | 2022-05-03 | 4.3 | 4.39 | 4.41 | 2.3 | 0.003 | 0.61 | 1.0 | 0.04 | 10.20 | 0.00 | 2.202 | 7.93 | 1.05 | 3.8 | 96.1 | 0.0 | 2.06 | 0.79 | 0.79 | — | 2.1 | 0.004 | 0.58 | 0.0 | 0.04 | 10.13 | 0.00 | 2.120 | 9.04 | 0.00 | 5.7 | 94.3 | 0.0 | 2.06 | 1.63 | 0.82 | 0.83 | — | 46194 | 7772 | 31 | 0 | 56 | 0 | 0 | logfile |
✔ | 5W9L | 8787 | 2024-03-21 | 2017-06-23 | 4.8 | 4.95 | 4.82 | 4.8 | 0.014 | 1.71 | 0.0 | 0.08 | 10.52 | 0.01 | 1.520 | 4.48 | 0.06 | 4.5 | 94.7 | 0.9 | 0.78 | 0.75 | 0.76 | — | 4.8 | 0.006 | 0.85 | 0.0 | 0.04 | 12.97 | 0.01 | 2.012 | 22.26 | 0.00 | 8.3 | 91.4 | 0.2 | -1.25 | 1.72 | 0.76 | 0.80 | — | 31118 | 4020 | 10 | 0 | 0 | 0 | 0 | logfile |