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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5H1C | 9567 | 2024-03-11 | 2016-10-08 | 4.5 | 4.34 | — | 3.8 | 0.009 | 1.30 | 0.0 | 0.05 | 15.37 | 0.00 | 1.454 | 41.46 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.52 | 0.66 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 15.23 | 0.00 | 1.883 | 16.17 | 0.00 | 6.1 | 92.8 | 1.1 | 0.25 | 1.57 | 0.58 | 0.83 | — | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2024-03-12 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.91 | 0.0 | 0.05 | 12.96 | 0.00 | 2.067 | 21.77 | 0.00 | 7.8 | 91.3 | 0.9 | -1.51 | 2.73 | 0.24 | 0.31 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2024-03-10 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.004 | 0.55 | 0.0 | 0.03 | 10.92 | 0.00 | 1.988 | 9.72 | 0.00 | 1.7 | 98.3 | 0.0 | 2.09 | 1.49 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 8JUY | 36666 | 2024-03-19 | 2023-06-27 | 4.34 | 4.24 | 4.46 | 4.2 | 0.005 | 0.86 | 0.0 | 0.05 | 15.36 | 0.01 | 1.353 | 19.63 | 0.15 | 8.7 | 91.2 | 0.1 | -1.58 | 0.73 | 0.63 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 14.48 | 0.00 | 2.027 | 12.00 | 0.00 | 7.3 | 92.6 | 0.1 | -0.88 | 1.44 | 0.78 | 0.72 | — | 24554 | 3069 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 7D9T | 30620 | 2024-03-11 | 2020-10-14 | 4.1 | 4.18 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 11.03 | 0.00 | 2.230 | 6.74 | 0.00 | 3.9 | 96.1 | 0.0 | -1.91 | 0.84 | 0.81 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 11.36 | 0.00 | 2.145 | 7.66 | 0.00 | 3.1 | 96.9 | 0.0 | 1.11 | 0.44 | 0.85 | 0.81 | — | 7451 | 1079 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7KCH | 22808 | 2024-03-15 | 2020-10-05 | 4.33 | 4.50 | 4.30 | 4.3 | 0.011 | 1.07 | 0.0 | 0.06 | 16.55 | 0.01 | 2.175 | 19.21 | 4.72 | 10.5 | 89.5 | 0.0 | -4.19 | 0.49 | 0.52 | — | 4.3 | 0.002 | 0.69 | 0.0 | 0.04 | 14.04 | 0.00 | 1.956 | 10.89 | 0.00 | 5.7 | 94.3 | 0.0 | 0.09 | 1.54 | 0.58 | 0.83 | — | 12248 | 1805 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 8DMG | 27536 | 2024-03-17 | 2022-07-08 | 4.4 | 5.39 | 4.50 | 4.6 | 0.029 | 2.33 | 20.0 | 0.12 | 16.95 | 0.01 | 0.312 | 28.72 | 6.80 | 6.0 | 92.3 | 1.7 | -2.43 | 0.79 | 0.61 | — | 4.6 | 0.004 | 0.76 | 0.0 | 0.04 | 13.61 | 0.00 | 1.855 | 87.56 | 0.00 | 6.9 | 93.0 | 0.0 | 0.04 | 2.26 | 0.93 | 0.85 | — | 16844 | 2068 | 4 | 0 | 18 | 0 | 202 | logfile |
✔ | 8D9M | 27266 | 2024-03-16 | 2022-06-10 | 4.2 | 3.57 | 4.20 | 3.3 | 0.007 | 1.02 | 0.0 | 0.05 | 16.46 | 0.01 | 1.684 | 31.57 | 0.45 | 17.2 | 82.8 | 0.0 | -2.61 | 0.83 | 0.80 | — | 3.2 | 0.006 | 0.94 | 0.0 | 0.05 | 16.66 | 0.00 | 1.341 | 19.75 | 0.00 | 14.7 | 85.3 | 0.0 | -2.92 | 0.58 | 0.83 | 0.80 | — | 15967 | 1806 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 7TT0 | 26106 | 2024-03-16 | 2022-01-31 | 4.3 | 4.51 | — | 4.4 | 0.005 | 0.84 | 0.0 | 0.05 | 10.42 | 0.00 | 2.151 | 3.09 | 0.00 | 1.2 | 98.8 | 0.0 | 1.30 | 0.68 | 0.75 | — | 4.4 | 0.002 | 0.55 | 0.0 | 0.04 | 12.32 | 0.00 | 1.958 | 8.06 | 0.00 | 3.1 | 96.9 | 0.0 | 0.74 | 1.11 | 0.69 | 0.77 | — | 14884 | 962 | 5 | 0 | 0 | 0 | 7253 | logfile |
✔ | 7NB8 | 12257 | 2024-03-17 | 2021-01-25 | 4.4 | 4.42 | — | 4.2 | 0.018 | 1.79 | 1.0 | 0.09 | 12.10 | 0.01 | 1.811 | 2.04 | 0.10 | 2.8 | 96.8 | 0.3 | 0.01 | 0.85 | 0.67 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 13.47 | 0.00 | 1.799 | 12.86 | 0.00 | 4.8 | 95.2 | 0.0 | -0.28 | 2.07 | 0.90 | 0.79 | — | 18570 | 1177 | 5 | 0 | 4 | 0 | 9185 | logfile |
✔ | 7YR4 | 34045 | 2024-03-11 | 2022-08-08 | 4.12 | 4.78 | 5.11 | 4.9 | 0.008 | 1.16 | 0.0 | 0.05 | 14.91 | 0.01 | 2.224 | 7.76 | 0.00 | 6.4 | 93.6 | 0.0 | -1.79 | 0.56 | 0.53 | — | 4.8 | 0.003 | 0.79 | 0.0 | 0.05 | 14.57 | 0.00 | 2.025 | 19.84 | 0.00 | 6.3 | 93.7 | 0.0 | -0.64 | 3.45 | 0.63 | 0.76 | — | 6394 | 787 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2024-03-18 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.005 | 1.06 | 2.0 | 0.05 | 13.91 | 0.01 | 2.083 | 35.87 | 0.00 | 16.6 | 82.5 | 0.9 | -3.94 | 4.20 | 0.34 | 0.59 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V0B | 20986 | 2024-03-15 | 2019-11-18 | 4.1 | 4.28 | 4.05 | 4.1 | 0.006 | 0.98 | 0.0 | 0.06 | 15.05 | 0.01 | 2.272 | 8.86 | 0.51 | 7.9 | 92.1 | 0.0 | -4.96 | 0.82 | 0.74 | — | 4.1 | 0.006 | 0.81 | 0.0 | 0.05 | 14.03 | 0.01 | 1.964 | 24.46 | 0.00 | 10.3 | 89.7 | 0.0 | -3.03 | 0.59 | 0.83 | 0.75 | — | 12485 | 1530 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iB8 | 35335 | 2024-03-15 | 2023-02-09 | 4.42 | 4.78 | 6.09 | 4.4 | 0.003 | 0.71 | 0.0 | 0.04 | 14.13 | 0.00 | 2.062 | 24.05 | 0.01 | 6.4 | 93.6 | 0.0 | -1.11 | 0.82 | 0.72 | — | 4.4 | 0.003 | 0.64 | 0.0 | 0.04 | 14.25 | 0.00 | 2.079 | 19.71 | 0.00 | 5.9 | 94.1 | 0.0 | -0.32 | 1.17 | 0.83 | 0.75 | — | 68524 | 8948 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AFL | 15401 | 2024-03-10 | 2022-07-18 | 4.4 | 3.03 | 4.24 | 2.2 | 0.004 | 0.74 | 0.0 | 0.04 | 15.27 | 0.00 | 2.153 | 18.68 | 0.25 | 8.4 | 91.6 | 0.0 | -3.48 | 0.59 | 0.59 | — | 2.1 | 0.004 | 0.73 | 0.0 | 0.04 | 15.42 | 0.00 | 2.158 | 16.25 | 0.00 | 6.5 | 93.5 | 0.0 | -1.48 | 0.80 | 0.59 | 0.59 | — | 3921 | 505 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TGP | 10500 | 2024-03-10 | 2019-11-17 | 4.4 | 4.64 | — | 4.3 | 0.013 | 1.90 | 1.0 | 0.13 | 12.88 | 0.01 | 2.228 | 7.38 | 2.08 | 5.2 | 94.8 | 0.0 | -3.36 | 0.45 | 0.85 | — | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 12.53 | 0.00 | 2.295 | 14.39 | 0.00 | 2.9 | 97.1 | 0.0 | 1.45 | 1.80 | 0.45 | 0.79 | — | 1344 | 176 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CRB | 16807 | 2024-03-11 | 2023-03-08 | 4.6 | 4.12 | 4.59 | 4.0 | 0.013 | 1.98 | 2.0 | 0.10 | 14.75 | 0.02 | 2.540 | 0.58 | 1.23 | 10.1 | 88.0 | 1.9 | -2.65 | 0.72 | 0.61 | — | 4.0 | 0.005 | 0.79 | 0.0 | 0.04 | 13.24 | 0.01 | 1.979 | 20.66 | 0.00 | 14.6 | 84.9 | 0.5 | -2.42 | 1.44 | 0.73 | 0.63 | — | 8665 | 582 | 3 | 0 | 0 | 0 | 4286 | logfile |
✔ | 7ARK | 11885 | 2024-03-14 | 2020-10-25 | 4.1 | 4.15 | — | 4.1 | 0.004 | 0.85 | 0.0 | 0.05 | 14.62 | 0.00 | 2.191 | 3.82 | 0.10 | 5.5 | 94.5 | 0.0 | -5.58 | 0.59 | 0.54 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 14.01 | 0.00 | 1.980 | 15.83 | 0.00 | 6.3 | 93.7 | 0.0 | -2.68 | 1.47 | 0.64 | 0.66 | — | 9570 | 1243 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7NDC | 12283 | 2024-03-21 | 2021-01-30 | 4.1 | 4.42 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 11.86 | 0.00 | 2.118 | 3.57 | 0.37 | 3.9 | 96.1 | 0.0 | -0.43 | 0.83 | 0.75 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 11.75 | 0.00 | 2.104 | 9.45 | 0.00 | 3.8 | 96.2 | 0.0 | 0.29 | 1.80 | 0.85 | 0.79 | — | 30645 | 3852 | 27 | 0 | 54 | 0 | 0 | logfile |
✔ | 8CTJ | 26992 | 2024-03-10 | 2022-05-15 | 4.74 | 4.27 | 4.78 | 5.3 | 0.005 | 0.92 | 0.0 | 0.05 | 14.67 | 0.01 | 2.233 | 6.13 | 0.00 | 4.6 | 95.4 | 0.0 | -0.72 | 0.43 | 0.48 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 14.72 | 0.00 | 2.098 | 15.69 | 0.00 | 5.8 | 94.2 | 0.0 | 0.16 | 1.85 | 0.50 | 0.59 | — | 3312 | 401 | 1 | 0 | 1 | 0 | 0 | logfile |