Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAC	6343	2022-12-13	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.91	0.01	1.933	77.25	0.00	27.5	71.1	1.4	-5.52	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	6SHS	10204	2022-12-11	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.003	0.65	0.0	0.05	12.94	0.00	2.245	6.84	0.00	16.4	83.6	0.0	-5.45	1.71	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7BX7	30235	2022-12-11	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.40	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	6B19	7031	2022-12-11	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.87	0.0	0.04	13.09	0.00	1.943	28.42	0.00	24.5	75.5	0.0	-5.38	1.33	0.77	0.65	—	5699	907	4	38	0	0	409	logfile
✔	6RiB	4887	2022-12-13	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.004	0.87	0.0	0.05	14.18	0.00	2.098	20.67	0.00	10.8	89.2	0.0	-5.32	1.95	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6N3B	9350	2022-12-11	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	5o3L	3741	2022-12-12	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	10.30	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.73	0.01	1.941	16.55	0.31	12.7	87.3	0.0	-5.25	2.67	0.56	0.74	2.54	11360	730	10	0	0	0	5790	logfile
✔	6ZRR	11383	2022-12-11	2020-07-14	4.0	4.04	3.78	4.3	0.015	1.20	0.0	0.06	13.24	0.00	2.189	28.46	0.00	5.0	95.0	0.0	-4.56	0.62	0.69	—	4.3	0.005	0.78	0.0	0.05	14.68	0.00	2.060	37.04	0.62	26.9	73.1	0.0	-5.23	1.54	0.65	0.76	—	5724	414	18	0	0	0	2664	logfile
✔	7U15	26278	2022-12-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.44	0.00	1.928	11.58	3.17	16.8	83.2	0.0	-5.23	1.48	0.27	0.70	2.64	6684	405	6	0	12	0	3255	logfile
✔	6iC3	4452	2022-12-11	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.277	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	4.2	0.004	0.89	0.0	0.05	16.95	0.01	2.210	19.56	0.69	13.3	86.7	0.0	-5.22	1.24	0.72	0.76	0.52	5472	728	8	0	0	0	0	logfile
✔	5G2X	3331	2022-12-14	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.83	0.0	0.04	19.26	0.01	1.964	33.23	0.23	18.1	80.7	1.3	-5.17	1.94	0.80	0.66	0.62	19072	487	3	704	0	0	0	logfile
✔	6N3A	9349	2022-12-11	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.28	0.00	2.210	17.25	2.05	10.2	89.8	0.0	-5.15	1.99	0.51	0.79	2.70	4310	600	20	0	0	0	0	logfile
✔	7JSH	22454	2022-12-11	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	6N37	9339	2022-12-11	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.43	0.00	2.266	20.72	0.80	11.2	88.8	0.0	-5.14	0.89	0.52	0.77	2.42	2580	360	10	0	0	0	0	logfile
✔	7BZX	30262	2022-12-11	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	6SSX	10307	2022-12-11	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.0	0.007	0.76	0.0	0.05	17.03	0.00	2.213	12.88	4.04	12.6	87.4	0.0	-5.11	0.78	0.65	0.85	4.46	4900	730	10	0	0	0	0	logfile
✔	6FLT	4276	2022-12-11	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.41	0.79	4.07	8060	580	10	0	0	0	4100	logfile
✔	7Q65	13852	2022-12-11	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.007	0.74	0.0	0.04	13.22	0.00	2.064	15.15	2.27	9.3	90.7	0.0	-5.01	0.68	0.58	0.85	4.35	6204	880	22	0	0	0	0	logfile
✔	6HUD	0274	2022-12-11	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	6.89	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.006	0.86	0.0	0.05	13.22	0.00	2.169	25.57	0.61	11.8	88.2	0.0	-5.00	1.50	0.60	0.80	—	2905	385	5	0	0	0	0	logfile
✔	7KXY	23067	2022-12-12	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.44	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.71	0.01	2.101	25.46	0.00	18.3	81.6	0.1	-4.95	0.63	0.63	0.61	—	9510	1181	2	0	0	0	0	logfile

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