Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UMZ	26610	2023-11-14	2022-04-08	3.09	3.37	3.21	3.3	0.004	0.87	0.0	0.04	17.35	0.01	2.198	7.00	2.38	6.1	93.3	0.6	-1.01	0.68	0.70	1.58	3.3	0.060	2.98	178.0	0.19	19.49	0.02	0.810	51.66	2.96	27.0	70.3	2.8	-6.90	1.64	0.75	0.86	2.31	111437	12516	12	0	3221	8	0	logfile
✔	7M65	23689	2023-11-13	2021-03-25	4.1	4.11	—	4.3	0.050	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.87	0.0	0.05	11.68	0.00	2.156	22.17	0.00	16.1	83.9	0.0	-6.30	4.44	0.51	0.72	—	2025	275	10	0	5	0	0	logfile
✔	6ZYD	11557	2023-11-21	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	17.41	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	18.86	0.02	1.731	57.41	12.94	21.7	78.3	0.0	-6.09	1.47	0.79	0.86	3.23	31423	1792	14	0	476	0	14490	logfile
✔	6ZRQ	11382	2023-11-13	2020-07-14	3.9	4.06	—	4.2	0.014	1.45	0.0	0.05	14.33	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.75	0.0	0.05	13.63	0.00	2.125	21.92	0.93	20.8	79.2	0.0	-6.09	2.13	0.70	0.77	2.54	3816	276	12	0	0	0	1776	logfile
✔	7DWV	30887	2023-11-13	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.72	0.0	0.05	17.18	0.00	2.182	17.15	1.19	22.4	77.6	0.0	-6.08	1.50	0.41	0.75	2.54	2064	258	6	0	0	0	0	logfile
✔	7Q3U	13795	2023-11-13	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.92	0.0	0.04	18.42	0.01	2.192	28.03	0.00	14.8	85.2	0.0	-6.03	2.22	0.34	0.60	2.69	2355	355	5	0	0	0	0	logfile
✔	6ZRF	11380	2023-11-13	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.28	0.0	0.05	15.23	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.78	0.0	0.05	15.71	0.00	2.253	22.30	0.42	13.3	86.7	0.0	-5.85	0.52	0.70	0.82	3.46	2220	300	12	0	0	0	0	logfile
✔	7V49	31704	2023-11-13	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile
✔	6XTB	10618	2023-11-13	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7Q64	13851	2023-11-14	2021-11-05	2.76	2.81	2.66	2.9	0.014	1.34	0.0	0.09	10.20	0.01	2.276	7.23	3.83	8.3	91.7	0.0	-6.01	0.58	0.78	3.39	2.8	0.007	0.74	0.0	0.04	14.97	0.00	2.095	13.26	6.91	7.5	92.5	0.0	-5.63	0.76	0.59	0.86	3.88	7810	1100	30	0	0	0	0	logfile
✔	7DA4	30622	2023-11-13	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	7BX7	30235	2023-11-13	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.006	0.67	0.0	0.04	14.07	0.00	2.160	13.60	2.30	6.2	93.8	0.0	-5.55	1.14	0.40	0.79	6.08	1896	270	6	0	0	0	0	logfile
✔	5LiJ	4054	2023-11-13	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.17	0.0	0.04	10.44	0.00	2.149	15.78	0.00	35.3	64.7	0.0	-5.53	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7JSH	22454	2023-11-14	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7WNZ	32636	2023-11-14	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.003	0.62	0.0	0.05	12.17	0.00	2.055	11.33	0.21	10.0	90.0	0.0	-5.42	0.50	0.31	0.66	5.59	9300	650	10	0	0	0	4780	logfile
✔	6RiB	4887	2023-11-16	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.010	1.18	0.0	0.06	14.53	0.01	2.111	35.36	0.00	25.6	74.4	0.0	-5.41	1.66	0.78	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6iC3	4452	2023-11-13	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.277	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	3.9	0.004	0.91	0.0	0.04	16.99	0.01	2.218	19.56	0.35	12.4	87.6	0.0	-5.40	1.24	0.72	0.77	0.95	5472	728	8	0	0	0	0	logfile
✔	7U15	26278	2023-11-14	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.79	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.88	0.00	1.951	10.55	3.97	17.8	82.2	0.0	-5.33	1.84	0.27	0.71	2.91	6684	405	6	0	12	0	3255	logfile
✔	7KWZ	23059	2023-11-13	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.003	0.80	0.0	0.04	15.22	0.01	2.138	13.38	0.45	4.8	95.2	0.0	-5.33	1.06	0.48	0.83	3.66	4695	695	5	0	0	0	0	logfile
✔	3JAC	6343	2023-11-16	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile

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