Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N3A	9349	2021-06-01	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.42	0.00	2.208	18.58	1.14	10.4	89.6	0.0	-5.19	1.70	0.53	0.79	2.69	4310	600	20	0	0	0	0	logfile
✔	6N3B	9350	2021-06-01	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.1	0.005	0.91	0.0	0.04	17.05	0.01	2.128	26.15	1.13	13.4	86.6	0.0	-5.10	1.94	0.45	0.72	1.97	2735	385	10	0	0	0	0	logfile
✔	6oSM	20186	2021-06-01	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.006	1.13	0.0	0.07	15.86	0.00	2.227	22.22	1.22	26.7	73.3	0.0	-5.09	3.40	0.45	0.75	2.33	4100	600	10	0	0	0	0	logfile
✔	5o3L	3741	2021-06-02	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.003	0.78	0.0	0.05	15.49	0.01	1.922	13.12	0.62	13.2	86.8	0.0	-5.08	2.68	0.55	0.72	2.50	11360	730	10	0	0	0	5790	logfile
✔	6S13	10079	2021-06-06	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.010	1.01	3.0	0.05	22.29	0.01	1.352	38.35	0.65	22.2	77.7	0.0	-5.04	2.69	0.68	0.59	1.01	233957	5608	52	4559	0	0	93218	logfile
✔	6H3J	0134	2021-06-03	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.003	0.58	0.0	0.04	13.38	0.00	1.918	53.82	0.23	18.7	81.3	0.0	-5.02	1.08	0.77	0.86	2.80	20301	2511	3	0	0	0	212	logfile
✔	6HUD	0274	2021-06-01	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.005	0.83	0.0	0.05	13.60	0.01	2.191	20.67	0.61	10.4	89.6	0.0	-5.01	1.51	0.61	0.79	—	2905	385	5	0	0	0	0	logfile
✔	6VW2	21410	2021-06-01	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.006	1.03	0.0	0.06	15.37	0.00	2.136	18.60	0.48	17.7	82.3	0.0	-5.00	0.45	0.42	0.74	2.00	1800	240	10	0	0	0	0	logfile
✔	7C1D	30269	2021-06-01	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	16.06	0.00	2.233	19.36	2.08	20.7	79.3	0.0	-4.92	2.85	0.38	0.77	4.49	2034	306	6	0	0	0	0	logfile
✔	6Y1A	10669	2021-06-01	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.003	0.66	0.0	0.04	11.03	0.00	2.095	10.42	0.00	5.7	94.3	0.0	-4.88	1.53	0.58	0.75	—	2960	400	32	0	16	0	0	logfile
✔	6R4R	4727	2021-06-01	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.83	0.0	0.05	17.25	0.01	2.106	16.34	1.36	8.6	91.4	0.0	-4.86	4.01	0.31	0.68	4.00	4312	539	7	0	0	0	0	logfile
✔	6L1U	0803	2021-06-02	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.33	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.004	0.65	0.0	0.05	16.83	0.00	2.182	11.48	0.59	11.2	88.8	0.0	-4.86	1.98	0.46	0.84	2.70	10515	1500	15	0	0	0	0	logfile
✔	6SSX	10307	2021-06-01	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.1	0.004	0.63	0.0	0.05	17.04	0.00	2.265	10.36	4.04	8.1	91.9	0.0	-4.85	0.77	0.67	0.84	4.22	4900	730	10	0	0	0	0	logfile
✔	6oKS	20103	2021-06-02	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.003	0.82	0.0	0.04	14.44	0.01	2.141	13.06	0.00	17.1	82.9	0.0	-4.82	2.22	0.78	0.81	—	13244	1610	14	0	0	0	0	logfile
✔	3JAC	6343	2021-06-02	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	56.86	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.70	0.0	0.07	14.00	0.01	1.903	74.13	0.00	24.0	74.6	1.4	-4.82	3.70	0.52	0.64	—	15741	1716	3	0	1038	0	0	logfile
✔	6BWD	7297	2021-06-03	2017-12-14	3.7	3.83	—	3.8	0.083	3.20	8.0	0.54	14.35	0.01	1.254	13.05	0.57	12.5	86.3	1.2	-5.69	0.64	0.76	1.55	3.8	0.012	2.00	1.0	0.15	17.56	0.01	1.813	46.93	0.42	11.7	87.2	1.1	-4.81	2.51	0.64	0.77	1.40	23187	2600	12	0	509	30	0	logfile
✔	5o3T	3743	2021-06-02	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.64	0.0	0.05	13.36	0.00	2.109	10.74	0.31	10.0	90.0	0.0	-4.78	2.38	0.60	0.74	3.15	11360	730	10	0	0	0	5790	logfile
✔	6NYN	0547	2021-06-01	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.53	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.008	0.88	0.0	0.05	13.03	0.00	2.123	20.94	0.62	21.6	78.3	0.0	-4.72	1.20	0.88	0.79	2.15	68664	9000	12	0	0	0	0	logfile
✔	6GQB	0048	2021-06-02	2018-06-07	3.9	3.98	—	3.9	0.008	1.19	1.0	0.06	17.18	0.01	2.146	8.35	1.22	16.6	83.0	0.5	-5.75	0.81	0.75	1.46	3.9	0.008	0.87	1.0	0.05	17.50	0.01	0.913	20.94	0.36	15.7	84.0	0.3	-4.72	0.43	0.83	0.79	1.17	212143	12373	93	5362	10	0	0	logfile
✔	6o9J	0661	2021-06-02	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.009	1.07	5.0	0.05	17.69	0.01	1.337	31.62	1.73	24.3	73.0	2.7	-4.71	2.20	0.80	0.77	0.44	142682	5731	53	4564	0	0	0	logfile

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