Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o3L	3741	2021-04-01	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.003	0.74	0.0	0.05	13.31	0.01	1.950	10.12	0.00	12.5	87.5	0.0	-5.11	2.86	0.57	0.73	3.04	11360	730	10	0	0	0	5790	logfile
✔	5o3T	3743	2021-04-01	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.64	0.0	0.05	11.15	0.00	2.060	10.21	0.00	10.7	89.3	0.0	-5.09	1.89	0.52	0.71	3.47	11360	730	10	0	0	0	5790	logfile
✔	6N3B	9350	2021-04-01	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.004	0.83	0.0	0.04	14.10	0.00	2.239	26.34	0.00	13.4	86.6	0.0	-5.08	1.47	0.46	0.72	1.77	2735	385	10	0	0	0	0	logfile
✔	6HUD	0274	2021-04-01	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.004	0.72	0.0	0.05	11.42	0.00	2.168	15.59	0.00	9.0	91.0	0.0	-5.02	1.27	0.61	0.79	—	2905	385	5	0	0	0	0	logfile
✔	6H3J	0134	2021-04-02	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.57	0.0	0.04	11.74	0.00	1.903	55.01	0.00	18.5	81.5	0.0	-5.01	0.68	0.77	0.85	3.07	20301	2511	3	0	0	0	212	logfile
✔	6GQB	0048	2021-04-07	2018-06-07	3.9	3.98	—	3.9	0.008	1.19	1.0	0.06	17.18	0.01	2.146	8.35	1.22	16.6	83.0	0.5	-5.75	0.81	0.75	1.46	3.9	0.006	0.84	1.0	0.05	16.88	0.01	0.560	18.67	0.06	14.8	84.9	0.3	-4.99	0.42	0.82	0.77	1.18	212143	12373	93	5362	10	0	0	logfile
✔	6VW2	21410	2021-04-01	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.003	0.84	0.0	0.05	11.22	0.00	2.256	13.66	0.00	21.4	78.6	0.0	-4.99	0.47	0.39	0.69	2.49	1800	240	10	0	0	0	0	logfile
✔	6SST	10305	2021-04-01	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.006	0.72	0.0	0.06	13.94	0.00	2.327	10.16	0.00	15.5	84.5	0.0	-4.94	0.47	0.61	0.84	5.00	4900	730	10	0	0	0	0	logfile
✔	6S13	10079	2021-04-11	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.010	1.06	2.0	0.05	21.72	0.01	1.365	39.72	0.16	22.0	77.9	0.1	-4.94	2.83	0.69	0.61	1.33	233957	5608	52	4559	0	0	93218	logfile
✔	6o9J	0661	2021-04-02	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.010	1.17	4.0	0.06	17.33	0.01	1.070	35.76	0.02	25.3	71.8	2.8	-4.93	2.22	0.80	0.78	0.78	142682	5731	53	4564	0	0	0	logfile
✔	6Y1A	10669	2021-04-01	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.003	0.66	0.0	0.04	11.03	0.00	2.095	10.42	0.00	5.7	94.3	0.0	-4.88	1.53	0.58	0.75	—	2960	400	32	0	16	0	0	logfile
✔	7K4B	22663	2021-04-02	2020-09-15	3.1	3.39	—	3.4	0.056	2.60	0.0	0.42	17.62	0.01	2.287	4.75	0.95	8.9	91.0	0.1	-6.09	0.56	0.82	3.72	3.4	0.008	1.51	0.0	0.12	19.04	0.01	2.142	23.27	0.00	8.0	91.9	0.2	-4.85	0.47	0.68	0.87	3.34	21118	2428	8	0	62	0	0	logfile
✔	6SSX	10307	2021-04-01	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.1	0.004	0.68	0.0	0.05	13.76	0.00	2.326	8.35	0.00	8.4	91.6	0.0	-4.84	1.95	0.68	0.84	4.46	4900	730	10	0	0	0	0	logfile
✔	6QVE	4650	2021-04-02	2019-03-01	3.7	3.88	—	3.8	0.045	1.76	0.0	0.14	12.42	0.01	2.076	5.71	0.32	6.5	93.5	0.0	-5.46	0.81	0.78	2.57	3.8	0.009	1.22	0.0	0.05	13.99	0.01	1.405	27.38	0.06	6.2	93.8	0.0	-4.83	2.88	0.81	0.80	2.26	14591	1831	9	2	6	0	0	logfile
✔	6oKS	20103	2021-04-02	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.003	0.82	0.0	0.04	14.44	0.01	2.141	13.06	0.00	17.1	82.9	0.0	-4.82	2.22	0.78	0.81	—	13244	1610	14	0	0	0	0	logfile
✔	3JAC	6343	2021-04-02	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	56.86	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.70	0.0	0.07	14.00	0.01	1.903	74.13	0.00	24.0	74.6	1.4	-4.82	3.70	0.52	0.64	—	15741	1716	3	0	1038	0	0	logfile
✔	6L1U	0803	2021-04-01	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.33	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.005	0.67	0.0	0.05	14.65	0.00	2.251	12.96	0.00	15.0	85.0	0.0	-4.81	3.01	0.47	0.84	2.99	10515	1500	15	0	0	0	0	logfile
✔	6R4R	4727	2021-04-01	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.84	0.0	0.05	14.73	0.00	2.125	15.14	0.45	8.8	91.2	0.0	-4.74	3.02	0.33	0.68	4.02	4312	539	7	0	0	0	0	logfile
✔	6QUY	4644	2021-04-02	2019-02-28	3.8	3.99	—	3.9	0.044	1.75	0.0	0.14	12.23	0.01	2.086	4.68	0.26	7.3	92.7	0.0	-5.51	0.84	0.80	2.82	3.9	0.007	1.18	0.0	0.05	13.92	0.01	1.232	24.64	0.00	6.6	93.4	0.0	-4.72	1.58	0.85	0.82	2.69	14637	1837	9	2	6	0	0	logfile
✔	6NYN	0547	2021-04-01	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.53	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.008	0.85	0.0	0.05	11.81	0.00	2.114	19.13	0.00	21.8	78.2	0.0	-4.70	0.54	0.88	0.79	2.34	68664	9000	12	0	0	0	0	logfile

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