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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6ZD0 | 11172 | 2023-04-20 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.04 | 5.38 | 0.00 | 2.341 | 5.89 | 0.00 | 15.0 | 84.6 | 0.4 | -4.68 | 2.32 | 0.61 | 0.58 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2023-04-26 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.004 | 0.71 | 0.0 | 0.05 | 12.57 | 0.00 | 2.163 | 16.36 | 0.20 | 17.0 | 83.0 | 0.0 | -4.58 | 0.51 | 0.88 | 0.79 | 2.29 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2023-04-21 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.28 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.45 | 0.01 | 2.088 | 21.63 | 0.10 | 15.0 | 84.9 | 0.1 | -4.55 | 1.26 | 0.63 | 0.60 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Q | 24259 | 2023-04-20 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.00 | 0.0 | 0.00 | 5.05 | 0.00 | 2.580 | 6.76 | 0.00 | 12.3 | 86.7 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYM | 0546 | 2023-04-26 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.20 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.1 | 0.007 | 0.83 | 0.0 | 0.05 | 12.88 | 0.00 | 2.133 | 18.95 | 0.35 | 20.3 | 79.7 | 0.0 | -4.50 | 1.20 | 0.88 | 0.80 | 2.49 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5H | 20646 | 2023-04-20 | 2019-08-27 | 4.0 | 3.67 | — | 3.7 | 0.005 | 1.07 | 0.0 | 0.06 | 8.74 | 0.01 | 2.234 | 9.36 | 0.39 | 13.6 | 86.4 | 0.0 | -5.23 | 0.41 | 0.68 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.63 | 0.00 | 2.120 | 18.93 | 0.64 | 10.2 | 89.8 | 0.0 | -4.46 | 0.95 | 0.42 | 0.69 | — | 7326 | 954 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z7Q | 11112 | 2023-04-24 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2023-04-26 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.007 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.204 | 15.43 | 0.38 | 18.1 | 81.9 | 0.0 | -4.31 | 0.58 | 0.83 | 0.79 | 3.08 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2023-04-21 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.56 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.003 | 0.89 | 0.0 | 0.04 | 17.84 | 0.00 | 1.911 | 69.53 | 1.47 | 18.7 | 77.9 | 3.4 | -4.26 | 0.93 | 0.38 | 0.72 | 0.85 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 3LoS | 5137 | 2023-04-22 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-04-20 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-04-19 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L2T | 0814 | 2023-04-22 | 2019-10-06 | 4.1 | 4.14 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.05 | 12.33 | 0.00 | 2.222 | 5.89 | 0.15 | 13.8 | 86.0 | 0.2 | -5.72 | 0.61 | 0.76 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 12.54 | 0.01 | 2.083 | 8.68 | 0.00 | 17.6 | 82.3 | 0.1 | -4.18 | 0.52 | 0.61 | 0.77 | — | 13604 | 1889 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KVE | 23048 | 2023-04-22 | 2020-11-27 | 3.3 | 3.69 | 3.38 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.32 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.75 | 0.73 | 2.61 | 3.6 | 0.003 | 0.69 | 0.0 | 0.05 | 16.52 | 0.01 | 2.162 | 12.03 | 0.08 | 12.6 | 87.4 | 0.0 | -4.06 | 1.20 | 0.75 | 0.73 | 2.24 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2023-04-20 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.012 | 2.01 | 0.0 | 0.08 | 4.72 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.007 | 1.19 | 0.0 | 0.05 | 8.16 | 0.01 | 2.172 | 17.74 | 0.00 | 22.8 | 77.2 | 0.1 | -4.06 | 1.20 | 0.82 | 0.76 | — | 7307 | 1393 | 16 | 0 | 23 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-04-23 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.89 | 0.0 | 0.04 | 17.39 | 0.01 | 2.066 | 20.24 | 0.88 | 15.6 | 84.1 | 0.3 | -4.03 | 1.62 | 0.62 | 0.67 | 0.65 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 6M1D | 30041 | 2023-04-26 | 2020-02-25 | 4.5 | 6.53 | — | 4.6 | 0.005 | 1.20 | 0.0 | 0.06 | 18.16 | 0.01 | 2.043 | 20.67 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | 4.6 | 0.005 | 1.04 | 0.0 | 0.05 | 14.90 | 0.01 | 0.441 | 31.95 | 0.00 | 11.3 | 88.3 | 0.4 | -4.03 | 0.67 | 0.68 | 0.70 | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EZo | 4162 | 2023-04-24 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.29 | 0.01 | 1.569 | 8.78 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.008 | 0.97 | 0.0 | 0.05 | 10.23 | 0.01 | 1.979 | 9.01 | 0.00 | 23.2 | 76.5 | 0.3 | -4.02 | 0.46 | 0.78 | 0.78 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TD6 | 25824 | 2023-04-20 | 2021-12-30 | 3.0 | 3.41 | 3.09 | 3.4 | 0.002 | 0.57 | 0.0 | 0.05 | 16.47 | 0.00 | 2.449 | 7.94 | 0.00 | 0.0 | 100.0 | 0.0 | -3.11 | 0.42 | 0.76 | 2.95 | 3.4 | 0.005 | 0.89 | 0.0 | 0.05 | 18.65 | 0.00 | 2.234 | 13.38 | 3.53 | 9.9 | 90.1 | 0.0 | -4.01 | 1.10 | 0.43 | 0.78 | 3.81 | 5575 | 690 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X0T | 32924 | 2023-04-21 | 2022-02-22 | 3.3 | 3.58 | — | 3.6 | 0.010 | 1.31 | 3.0 | 0.09 | 15.37 | 0.01 | 2.217 | 7.12 | 1.87 | 9.9 | 89.8 | 0.2 | -5.80 | 0.64 | 0.81 | 2.49 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 16.37 | 0.00 | 2.281 | 7.51 | 0.37 | 7.6 | 92.4 | 0.0 | -3.99 | 0.95 | 0.62 | 0.83 | 1.90 | 10189 | 1266 | 4 | 0 | 2 | 0 | 0 | logfile |