Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iC3	4452	2021-09-02	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.277	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	3.9	0.005	0.92	0.0	0.05	16.91	0.01	2.187	21.16	0.69	16.6	83.4	0.0	-5.23	1.26	0.73	0.78	0.71	5472	728	8	0	0	0	0	logfile
✔	6N3A	9349	2021-09-02	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.004	0.97	0.0	0.04	18.85	0.00	2.240	17.85	0.68	9.3	90.7	0.0	-5.13	1.72	0.57	0.78	2.66	4310	600	20	0	0	0	0	logfile
✔	6N37	9339	2021-09-02	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	12.55	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.82	0.0	0.04	18.22	0.00	2.251	23.31	1.60	8.8	91.2	0.0	-5.12	0.93	0.52	0.77	2.56	2580	360	10	0	0	0	0	logfile
✔	5o3L	3741	2021-09-03	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.81	0.0	0.05	15.40	0.01	1.930	15.58	0.78	15.1	84.9	0.0	-5.10	2.89	0.57	0.75	2.67	11360	730	10	0	0	0	5790	logfile
✔	6SHS	10204	2021-09-02	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	24.99	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.60	0.0	0.05	12.68	0.00	2.200	5.03	0.00	14.9	85.1	0.0	-5.02	1.72	0.72	0.70	—	7068	480	12	0	0	0	3408	logfile
✔	6H3J	0134	2021-09-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.59	0.0	0.04	13.50	0.00	1.935	54.13	0.23	16.1	83.9	0.0	-5.01	2.69	0.77	0.85	2.73	20301	2511	3	0	0	0	212	logfile
✔	6oKS	20103	2021-09-03	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.011	1.20	0.0	0.05	14.60	0.01	1.591	26.80	0.07	20.7	79.3	0.0	-5.00	2.22	0.79	0.83	—	13244	1610	14	0	0	0	0	logfile
✔	6L1U	0803	2021-09-03	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.33	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.005	0.68	0.0	0.05	16.68	0.00	2.174	12.64	1.18	13.8	86.2	0.0	-4.96	1.98	0.47	0.84	2.58	10515	1500	15	0	0	0	0	logfile
✔	6HUD	0274	2021-09-02	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.006	0.85	0.0	0.05	13.13	0.01	2.142	22.67	0.91	11.5	88.5	0.0	-4.95	1.54	0.61	0.79	—	2905	385	5	0	0	0	0	logfile
✔	5G2X	3331	2021-09-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.07	0.0	0.05	20.99	0.01	1.908	50.51	1.13	22.9	75.6	1.5	-4.95	2.49	0.80	0.67	0.91	19072	487	3	704	0	0	0	logfile
✔	6Y1A	10669	2021-09-02	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.004	0.70	0.0	0.04	10.74	0.00	2.058	13.24	0.60	7.3	92.7	0.0	-4.93	1.56	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	6VW2	21410	2021-09-02	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.003	0.79	0.0	0.05	14.59	0.00	2.242	10.76	0.95	17.3	82.7	0.0	-4.93	0.44	0.41	0.71	1.67	1800	240	10	0	0	0	0	logfile
✔	6SSX	10307	2021-09-02	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.1	0.005	0.68	0.0	0.05	17.01	0.00	2.246	11.57	4.04	10.3	89.7	0.0	-4.92	0.78	0.67	0.85	4.34	4900	730	10	0	0	0	0	logfile
✔	6NYL	0545	2021-09-04	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.29	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.2	0.007	0.89	0.0	0.05	13.04	0.00	2.117	29.58	0.42	23.2	76.8	0.0	-4.89	0.57	0.87	0.74	1.98	68664	9000	12	0	0	0	0	logfile
✔	5o3T	3743	2021-09-03	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.64	0.0	0.05	13.10	0.00	1.936	10.30	0.16	11.3	88.7	0.0	-4.89	1.88	0.51	0.71	3.12	11360	730	10	0	0	0	5790	logfile
✔	3JAC	6343	2021-09-03	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	56.86	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.07	13.90	0.01	1.928	75.14	0.00	24.3	74.3	1.4	-4.87	3.68	0.52	0.64	—	15741	1716	3	0	1038	0	0	logfile
✔	6ZRR	11383	2021-09-02	2020-07-14	4.0	4.04	3.78	4.3	0.015	1.20	0.0	0.06	13.24	0.00	2.189	26.93	0.00	5.0	95.0	0.0	-4.56	0.62	0.69	—	4.3	0.003	0.69	0.0	0.05	14.39	0.00	2.106	31.43	0.62	18.6	81.4	0.0	-4.86	2.47	0.68	0.76	—	5724	414	18	0	0	0	2664	logfile
✔	7KXY	23067	2021-09-02	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.12	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.86	0.0	0.05	14.43	0.01	2.112	25.89	0.00	16.7	83.3	0.1	-4.83	1.29	0.63	0.61	—	9510	1181	2	0	0	0	0	logfile
✔	6SST	10305	2021-09-02	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.005	0.72	0.0	0.05	15.27	0.00	2.307	10.56	0.43	15.1	84.9	0.0	-4.83	0.50	0.61	0.84	4.81	4900	730	10	0	0	0	0	logfile
✔	6R4R	4727	2021-09-02	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.83	0.0	0.05	17.60	0.01	2.131	16.46	0.68	8.6	91.4	0.0	-4.80	4.02	0.31	0.67	3.52	4312	539	7	0	0	0	0	logfile

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