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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JAC | 6343 | 2022-12-13 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.72 | 0.0 | 0.06 | 13.91 | 0.01 | 1.933 | 77.25 | 0.00 | 27.5 | 71.1 | 1.4 | -5.52 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2022-12-11 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.05 | 12.94 | 0.00 | 2.245 | 6.84 | 0.00 | 16.4 | 83.6 | 0.0 | -5.45 | 1.71 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7BX7 | 30235 | 2022-12-11 | 2020-04-17 | 2.8 | 2.94 | — | 2.9 | 0.009 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.228 | 15.34 | 0.00 | 9.3 | 90.7 | 0.0 | -5.83 | 0.40 | 0.79 | 6.36 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 13.78 | 0.00 | 2.166 | 11.86 | 1.72 | 8.5 | 91.5 | 0.0 | -5.45 | 1.13 | 0.40 | 0.79 | 6.15 | 1896 | 270 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B19 | 7031 | 2022-12-11 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 6.45 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.87 | 0.0 | 0.04 | 13.09 | 0.00 | 1.943 | 28.42 | 0.00 | 24.5 | 75.5 | 0.0 | -5.38 | 1.33 | 0.77 | 0.65 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |
✔ | 6RiB | 4887 | 2022-12-13 | 2019-04-23 | 4.2 | 3.32 | — | 4.0 | 0.008 | 1.12 | 0.0 | 0.06 | 18.48 | 0.00 | 0.563 | 15.47 | 9.09 | 10.1 | 89.9 | 0.0 | -5.68 | 0.73 | 0.66 | — | 3.9 | 0.004 | 0.87 | 0.0 | 0.05 | 14.18 | 0.00 | 2.098 | 20.67 | 0.00 | 10.8 | 89.2 | 0.0 | -5.32 | 1.95 | 0.77 | 0.74 | — | 16368 | 2222 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3B | 9350 | 2022-12-11 | 2018-11-14 | 3.8 | 3.75 | — | 4.0 | 0.010 | 1.21 | 0.0 | 0.05 | 11.40 | 0.01 | 2.253 | 20.70 | 0.00 | 13.7 | 86.3 | 0.0 | -5.17 | 0.41 | 0.71 | 2.90 | 4.0 | 0.005 | 0.87 | 0.0 | 0.04 | 16.51 | 0.01 | 2.102 | 26.34 | 1.51 | 13.2 | 86.8 | 0.0 | -5.29 | 1.48 | 0.42 | 0.71 | 1.88 | 2735 | 385 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5o3L | 3741 | 2022-12-12 | 2017-05-24 | 3.4 | 3.71 | 3.34 | 3.7 | 0.012 | 1.03 | 0.0 | 0.06 | 8.97 | 0.01 | 2.111 | 10.30 | 0.00 | 22.4 | 77.6 | 0.0 | -6.67 | 0.60 | 0.69 | 2.44 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 15.73 | 0.01 | 1.941 | 16.55 | 0.31 | 12.7 | 87.3 | 0.0 | -5.25 | 2.67 | 0.56 | 0.74 | 2.54 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 6ZRR | 11383 | 2022-12-11 | 2020-07-14 | 4.0 | 4.04 | 3.78 | 4.3 | 0.015 | 1.20 | 0.0 | 0.06 | 13.24 | 0.00 | 2.189 | 28.46 | 0.00 | 5.0 | 95.0 | 0.0 | -4.56 | 0.62 | 0.69 | — | 4.3 | 0.005 | 0.78 | 0.0 | 0.05 | 14.68 | 0.00 | 2.060 | 37.04 | 0.62 | 26.9 | 73.1 | 0.0 | -5.23 | 1.54 | 0.65 | 0.76 | — | 5724 | 414 | 18 | 0 | 0 | 0 | 2664 | logfile |
✔ | 7U15 | 26278 | 2022-12-11 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.18 | 0.0 | 0.12 | 17.37 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.74 | 0.0 | 0.11 | 17.44 | 0.00 | 1.928 | 11.58 | 3.17 | 16.8 | 83.2 | 0.0 | -5.23 | 1.48 | 0.27 | 0.70 | 2.64 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 6iC3 | 4452 | 2022-12-11 | 2018-12-02 | 3.3 | 4.00 | — | 3.9 | 0.010 | 1.26 | 0.0 | 0.06 | 16.17 | 0.01 | 2.277 | 9.22 | 1.39 | 16.9 | 83.1 | 0.0 | -5.61 | 0.76 | 0.80 | 1.39 | 4.2 | 0.004 | 0.89 | 0.0 | 0.05 | 16.95 | 0.01 | 2.210 | 19.56 | 0.69 | 13.3 | 86.7 | 0.0 | -5.22 | 1.24 | 0.72 | 0.76 | 0.52 | 5472 | 728 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2022-12-14 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.83 | 0.0 | 0.04 | 19.26 | 0.01 | 1.964 | 33.23 | 0.23 | 18.1 | 80.7 | 1.3 | -5.17 | 1.94 | 0.80 | 0.66 | 0.62 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6N3A | 9349 | 2022-12-11 | 2018-11-14 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 14.53 | 0.01 | 2.469 | 17.25 | 0.00 | 8.9 | 91.1 | 0.0 | -5.23 | 0.49 | 0.76 | 3.75 | 3.6 | 0.005 | 0.96 | 0.0 | 0.04 | 19.28 | 0.00 | 2.210 | 17.25 | 2.05 | 10.2 | 89.8 | 0.0 | -5.15 | 1.99 | 0.51 | 0.79 | 2.70 | 4310 | 600 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2022-12-11 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.004 | 1.19 | 0.0 | 0.04 | 13.17 | 0.00 | 1.948 | 19.40 | 0.00 | 27.4 | 72.5 | 0.2 | -5.14 | 6.11 | 0.74 | 0.62 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 6N37 | 9339 | 2022-12-11 | 2018-11-14 | 3.8 | 3.51 | — | 4.2 | 0.009 | 1.42 | 0.0 | 0.06 | 16.98 | 0.01 | 2.399 | 13.15 | 0.00 | 14.7 | 85.3 | 0.0 | -5.92 | 0.51 | 0.77 | 3.18 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 18.43 | 0.00 | 2.266 | 20.72 | 0.80 | 11.2 | 88.8 | 0.0 | -5.14 | 0.89 | 0.52 | 0.77 | 2.42 | 2580 | 360 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2022-12-11 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.9 | 0.004 | 1.07 | 0.0 | 0.05 | 8.41 | 0.00 | 2.068 | 18.09 | 0.00 | 18.4 | 81.5 | 0.1 | -5.13 | 3.15 | 0.75 | 0.57 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SSX | 10307 | 2022-12-11 | 2019-09-09 | 2.98 | 3.11 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.07 | 14.94 | 0.00 | 2.424 | 6.14 | 4.26 | 12.6 | 87.4 | 0.0 | -4.73 | 0.65 | 0.82 | 4.81 | 3.0 | 0.007 | 0.76 | 0.0 | 0.05 | 17.03 | 0.00 | 2.213 | 12.88 | 4.04 | 12.6 | 87.4 | 0.0 | -5.11 | 0.78 | 0.65 | 0.85 | 4.46 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLT | 4276 | 2022-12-11 | 2018-01-28 | 3.42 | 3.32 | — | 3.5 | 0.014 | 1.15 | 0.0 | 0.06 | 8.31 | 0.00 | 2.330 | 9.03 | 0.00 | 14.3 | 85.7 | 0.0 | -5.36 | 0.44 | 0.74 | 2.91 | 3.5 | 0.005 | 0.67 | 0.0 | 0.05 | 10.57 | 0.00 | 2.300 | 12.13 | 0.00 | 20.7 | 79.3 | 0.0 | -5.03 | 2.04 | 0.41 | 0.79 | 4.07 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 7Q65 | 13852 | 2022-12-11 | 2021-11-05 | 3.32 | 2.96 | 3.26 | 3.3 | 0.016 | 1.56 | 0.0 | 0.10 | 10.10 | 0.01 | 2.159 | 3.45 | 8.33 | 10.5 | 89.5 | 0.0 | -5.74 | 0.64 | 0.85 | 4.16 | 3.3 | 0.007 | 0.74 | 0.0 | 0.04 | 13.22 | 0.00 | 2.064 | 15.15 | 2.27 | 9.3 | 90.7 | 0.0 | -5.01 | 0.68 | 0.58 | 0.85 | 4.35 | 6204 | 880 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HUD | 0274 | 2022-12-11 | 2018-10-06 | 4.0 | 4.06 | — | 4.3 | 0.007 | 1.12 | 0.0 | 0.07 | 8.28 | 0.01 | 2.216 | 6.89 | 0.00 | 8.2 | 91.8 | 0.0 | -5.06 | 0.59 | 0.76 | — | 4.3 | 0.006 | 0.86 | 0.0 | 0.05 | 13.22 | 0.00 | 2.169 | 25.57 | 0.61 | 11.8 | 88.2 | 0.0 | -5.00 | 1.50 | 0.60 | 0.80 | — | 2905 | 385 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2022-12-12 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.44 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.004 | 0.88 | 0.0 | 0.05 | 14.71 | 0.01 | 2.101 | 25.46 | 0.00 | 18.3 | 81.6 | 0.1 | -4.95 | 0.63 | 0.63 | 0.61 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |