Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M61	23686	2023-08-09	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.80	0.0	0.05	14.85	0.00	2.106	21.09	0.00	14.3	85.7	0.0	-4.66	0.84	0.48	0.75	2.97	1690	230	10	0	10	0	0	logfile
✔	7YL0	33901	2023-08-09	2022-07-25	3.2	3.47	3.15	3.4	0.016	2.51	0.0	0.11	14.66	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.006	0.87	0.0	0.05	14.02	0.00	2.101	15.37	0.62	14.7	85.3	0.0	-4.64	1.75	0.44	0.77	4.96	2958	396	12	0	0	0	0	logfile
✔	7U13	26276	2023-08-09	2022-02-19	2.9	3.67	—	4.2	0.018	2.43	0.0	0.07	16.46	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	1.02	0.0	0.06	17.50	0.00	2.138	20.90	3.94	11.8	88.2	0.0	-4.59	6.73	0.33	0.57	1.35	3456	405	6	0	12	0	0	logfile
✔	6NYN	0547	2023-08-16	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.62	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.004	0.71	0.0	0.05	12.57	0.00	2.163	16.36	0.20	17.0	83.0	0.0	-4.58	0.51	0.88	0.79	2.29	68664	9000	12	0	0	0	0	logfile
✔	7YMN	33934	2023-08-09	2022-07-28	3.46	3.33	3.01	3.9	0.007	0.73	0.0	0.05	12.25	0.00	2.234	11.60	0.00	17.6	82.4	0.0	-5.43	0.38	0.81	4.13	3.5	0.004	0.67	0.0	0.05	14.02	0.01	2.199	9.48	0.25	7.9	92.1	0.0	-4.57	0.47	0.48	0.82	4.24	3468	456	6	0	0	0	0	logfile
✔	6UUR	20900	2023-08-09	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.6	0.005	0.85	0.0	0.05	16.32	0.00	2.222	11.96	0.80	7.6	92.4	0.0	-4.56	2.23	0.50	0.78	2.96	2770	400	10	0	0	0	0	logfile
✔	7KXY	23067	2023-08-11	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.003	0.82	0.0	0.05	14.45	0.01	2.088	21.63	0.10	15.0	84.9	0.1	-4.55	1.26	0.63	0.60	—	9510	1181	2	0	0	0	0	logfile
✔	7ZH7	14726	2023-08-12	2022-04-05	3.3	3.52	2.56	3.5	0.003	0.74	0.0	0.05	11.41	0.01	2.267	3.63	0.00	2.7	97.3	0.0	-4.42	0.36	0.78	5.27	3.5	0.006	0.70	0.0	0.05	14.83	0.00	1.932	8.64	0.18	12.3	87.7	0.0	-4.53	1.32	0.40	0.82	5.42	11520	760	10	0	0	0	5390	logfile
✔	7N9Q	24259	2023-08-10	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	6NYM	0546	2023-08-16	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.20	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.1	0.007	0.83	0.0	0.05	12.88	0.00	2.133	18.95	0.35	20.3	79.7	0.0	-4.50	1.20	0.88	0.80	2.49	68664	9000	12	0	0	0	0	logfile
✔	6U5H	20646	2023-08-10	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.04	15.63	0.00	2.120	18.93	0.64	10.2	89.8	0.0	-4.46	0.95	0.42	0.69	—	7326	954	3	0	0	0	0	logfile
✔	6WQK	21871	2023-08-09	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.006	0.77	0.0	0.05	13.71	0.00	2.228	7.21	0.00	5.1	94.9	0.0	-4.42	0.47	0.46	0.85	5.27	2070	285	5	0	0	0	0	logfile
✔	8ADU	15370	2023-08-09	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.3	0.006	0.77	0.0	0.05	17.58	0.00	2.306	16.01	2.61	12.8	87.2	0.0	-4.37	2.39	0.48	0.82	3.07	3460	495	5	0	0	0	0	logfile
✔	6VHA	21201	2023-08-09	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.003	0.74	0.0	0.05	13.40	0.00	2.336	12.82	0.00	9.8	90.2	0.0	-4.37	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	6Z7Q	11112	2023-08-14	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.92	0.0	0.05	16.92	0.00	2.170	21.04	0.91	17.3	82.6	0.0	-4.35	1.20	0.75	0.83	1.27	16665	2080	5	0	0	0	0	logfile
✔	6CU7	7618	2023-08-09	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.003	0.60	0.0	0.05	13.65	0.00	2.209	12.68	0.48	13.1	86.9	0.0	-4.33	1.75	0.36	0.70	2.29	4140	600	10	0	0	0	0	logfile
✔	7L7H	23212	2023-08-09	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.94	0.0	0.06	16.29	0.00	2.073	19.50	1.96	27.7	72.3	0.0	-4.33	0.93	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	7U14	26277	2023-08-09	2022-02-19	4.5	4.22	—	4.6	0.006	0.94	0.0	0.07	16.90	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	1.06	0.0	0.07	14.10	0.01	2.129	21.22	0.00	16.3	83.7	0.0	-4.33	1.63	0.35	0.64	—	3456	405	6	0	12	0	0	logfile
✔	6NYJ	0544	2023-08-16	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.007	0.80	0.0	0.05	12.81	0.00	2.204	15.43	0.38	18.1	81.9	0.0	-4.31	0.58	0.83	0.79	3.08	68664	9000	12	0	0	0	0	logfile
✔	7V47	31702	2023-08-09	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile

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