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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7M61 | 23686 | 2023-08-09 | 2021-03-25 | 3.8 | 3.83 | — | 4.1 | 0.005 | 1.01 | 0.0 | 0.08 | 12.79 | 0.00 | 2.218 | 22.02 | 0.00 | 14.3 | 85.7 | 0.0 | -4.63 | 0.49 | 0.73 | 2.45 | 3.9 | 0.004 | 0.80 | 0.0 | 0.05 | 14.85 | 0.00 | 2.106 | 21.09 | 0.00 | 14.3 | 85.7 | 0.0 | -4.66 | 0.84 | 0.48 | 0.75 | 2.97 | 1690 | 230 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7YL0 | 33901 | 2023-08-09 | 2022-07-25 | 3.2 | 3.47 | 3.15 | 3.4 | 0.016 | 2.51 | 0.0 | 0.11 | 14.66 | 0.01 | 2.515 | 18.86 | 0.00 | 5.0 | 95.0 | 0.0 | -4.14 | 0.41 | 0.74 | 4.76 | 3.4 | 0.006 | 0.87 | 0.0 | 0.05 | 14.02 | 0.00 | 2.101 | 15.37 | 0.62 | 14.7 | 85.3 | 0.0 | -4.64 | 1.75 | 0.44 | 0.77 | 4.96 | 2958 | 396 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U13 | 26276 | 2023-08-09 | 2022-02-19 | 2.9 | 3.67 | — | 4.2 | 0.018 | 2.43 | 0.0 | 0.07 | 16.46 | 0.01 | 2.120 | 29.95 | 6.30 | 11.3 | 88.0 | 0.8 | -3.06 | 0.30 | 0.47 | 1.37 | 4.2 | 0.005 | 1.02 | 0.0 | 0.06 | 17.50 | 0.00 | 2.138 | 20.90 | 3.94 | 11.8 | 88.2 | 0.0 | -4.59 | 6.73 | 0.33 | 0.57 | 1.35 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2023-08-16 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.004 | 0.71 | 0.0 | 0.05 | 12.57 | 0.00 | 2.163 | 16.36 | 0.20 | 17.0 | 83.0 | 0.0 | -4.58 | 0.51 | 0.88 | 0.79 | 2.29 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YMN | 33934 | 2023-08-09 | 2022-07-28 | 3.46 | 3.33 | 3.01 | 3.9 | 0.007 | 0.73 | 0.0 | 0.05 | 12.25 | 0.00 | 2.234 | 11.60 | 0.00 | 17.6 | 82.4 | 0.0 | -5.43 | 0.38 | 0.81 | 4.13 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 14.02 | 0.01 | 2.199 | 9.48 | 0.25 | 7.9 | 92.1 | 0.0 | -4.57 | 0.47 | 0.48 | 0.82 | 4.24 | 3468 | 456 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UUR | 20900 | 2023-08-09 | 2019-10-31 | 3.5 | 3.51 | — | 3.6 | 0.004 | 0.76 | 0.0 | 0.05 | 15.65 | 0.00 | 2.644 | 8.15 | 0.00 | 5.3 | 94.7 | 0.0 | -4.46 | 0.56 | 0.78 | 3.10 | 3.6 | 0.005 | 0.85 | 0.0 | 0.05 | 16.32 | 0.00 | 2.222 | 11.96 | 0.80 | 7.6 | 92.4 | 0.0 | -4.56 | 2.23 | 0.50 | 0.78 | 2.96 | 2770 | 400 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2023-08-11 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.28 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.45 | 0.01 | 2.088 | 21.63 | 0.10 | 15.0 | 84.9 | 0.1 | -4.55 | 1.26 | 0.63 | 0.60 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZH7 | 14726 | 2023-08-12 | 2022-04-05 | 3.3 | 3.52 | 2.56 | 3.5 | 0.003 | 0.74 | 0.0 | 0.05 | 11.41 | 0.01 | 2.267 | 3.63 | 0.00 | 2.7 | 97.3 | 0.0 | -4.42 | 0.36 | 0.78 | 5.27 | 3.5 | 0.006 | 0.70 | 0.0 | 0.05 | 14.83 | 0.00 | 1.932 | 8.64 | 0.18 | 12.3 | 87.7 | 0.0 | -4.53 | 1.32 | 0.40 | 0.82 | 5.42 | 11520 | 760 | 10 | 0 | 0 | 0 | 5390 | logfile |
✔ | 7N9Q | 24259 | 2023-08-10 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.00 | 0.0 | 0.00 | 5.05 | 0.00 | 2.580 | 6.76 | 0.00 | 12.3 | 86.7 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYM | 0546 | 2023-08-16 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.20 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.1 | 0.007 | 0.83 | 0.0 | 0.05 | 12.88 | 0.00 | 2.133 | 18.95 | 0.35 | 20.3 | 79.7 | 0.0 | -4.50 | 1.20 | 0.88 | 0.80 | 2.49 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5H | 20646 | 2023-08-10 | 2019-08-27 | 4.0 | 3.67 | — | 3.7 | 0.005 | 1.07 | 0.0 | 0.06 | 8.74 | 0.01 | 2.234 | 9.36 | 0.39 | 13.6 | 86.4 | 0.0 | -5.23 | 0.41 | 0.68 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.63 | 0.00 | 2.120 | 18.93 | 0.64 | 10.2 | 89.8 | 0.0 | -4.46 | 0.95 | 0.42 | 0.69 | — | 7326 | 954 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WQK | 21871 | 2023-08-09 | 2020-04-29 | 3.1 | 3.26 | — | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.47 | 0.00 | 2.272 | 4.54 | 0.00 | 1.8 | 98.2 | 0.0 | -5.40 | 0.48 | 0.84 | 4.99 | 3.3 | 0.006 | 0.77 | 0.0 | 0.05 | 13.71 | 0.00 | 2.228 | 7.21 | 0.00 | 5.1 | 94.9 | 0.0 | -4.42 | 0.47 | 0.46 | 0.85 | 5.27 | 2070 | 285 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ADU | 15370 | 2023-08-09 | 2022-07-11 | 3.24 | 2.85 | 2.78 | 3.3 | 0.007 | 0.82 | 0.0 | 0.07 | 15.52 | 0.00 | 2.296 | 20.22 | 0.00 | 11.3 | 88.7 | 0.0 | -4.91 | 0.52 | 0.82 | 3.23 | 3.3 | 0.006 | 0.77 | 0.0 | 0.05 | 17.58 | 0.00 | 2.306 | 16.01 | 2.61 | 12.8 | 87.2 | 0.0 | -4.37 | 2.39 | 0.48 | 0.82 | 3.07 | 3460 | 495 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHA | 21201 | 2023-08-09 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.05 | 13.40 | 0.00 | 2.336 | 12.82 | 0.00 | 9.8 | 90.2 | 0.0 | -4.37 | 3.38 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z7Q | 11112 | 2023-08-14 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU7 | 7618 | 2023-08-09 | 2018-03-23 | 3.5 | 3.63 | — | 4.3 | 0.007 | 0.99 | 0.0 | 0.07 | 9.61 | 0.00 | 2.346 | 4.58 | 2.38 | 15.5 | 84.5 | 0.0 | -4.74 | 0.38 | 0.72 | 2.52 | 4.3 | 0.003 | 0.60 | 0.0 | 0.05 | 13.65 | 0.00 | 2.209 | 12.68 | 0.48 | 13.1 | 86.9 | 0.0 | -4.33 | 1.75 | 0.36 | 0.70 | 2.29 | 4140 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2023-08-09 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.004 | 0.94 | 0.0 | 0.06 | 16.29 | 0.00 | 2.073 | 19.50 | 1.96 | 27.7 | 72.3 | 0.0 | -4.33 | 0.93 | 0.51 | 0.65 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U14 | 26277 | 2023-08-09 | 2022-02-19 | 4.5 | 4.22 | — | 4.6 | 0.006 | 0.94 | 0.0 | 0.07 | 16.90 | 0.00 | 2.369 | 21.08 | 6.30 | 10.5 | 89.5 | 0.0 | -3.07 | 0.30 | 0.52 | — | 4.4 | 0.006 | 1.06 | 0.0 | 0.07 | 14.10 | 0.01 | 2.129 | 21.22 | 0.00 | 16.3 | 83.7 | 0.0 | -4.33 | 1.63 | 0.35 | 0.64 | — | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2023-08-16 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.007 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.204 | 15.43 | 0.38 | 18.1 | 81.9 | 0.0 | -4.31 | 0.58 | 0.83 | 0.79 | 3.08 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V47 | 31702 | 2023-08-09 | 2021-08-12 | 2.8 | 2.80 | — | 3.0 | 0.007 | 0.78 | 0.0 | 0.06 | 12.91 | 0.00 | 2.567 | 6.32 | 0.00 | 18.6 | 81.4 | 0.0 | -5.86 | 0.44 | 0.80 | 6.31 | 2.9 | 0.005 | 0.72 | 0.0 | 0.06 | 17.25 | 0.00 | 2.432 | 8.29 | 3.25 | 20.3 | 79.7 | 0.0 | -4.30 | 0.33 | 0.44 | 0.80 | 6.27 | 2484 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |