Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NYJ	0544	2023-02-27	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.007	0.80	0.0	0.05	12.81	0.00	2.204	15.43	0.38	18.1	81.9	0.0	-4.31	0.58	0.83	0.79	3.08	68664	9000	12	0	0	0	0	logfile
✔	7V4C	31707	2023-02-16	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.002	0.61	0.0	0.05	17.20	0.00	2.152	4.55	1.52	6.1	93.9	0.0	-4.30	2.19	0.40	0.82	3.23	1287	186	3	0	0	0	0	logfile
✔	7V47	31702	2023-02-16	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile
✔	7VZF	32227	2023-02-16	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	7NCi	12267	2023-02-20	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.004	0.64	2.0	0.05	14.88	0.00	1.935	18.73	1.48	13.7	86.3	0.0	-4.29	1.57	0.67	0.62	0.22	11292	816	12	0	0	0	5796	logfile
✔	6DSo	8910	2023-02-17	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.004	0.69	0.0	0.04	15.62	0.00	2.146	10.22	0.35	8.8	91.2	0.0	-4.29	1.56	0.50	0.82	4.96	6588	828	12	0	0	0	0	logfile
✔	3LoS	5137	2023-02-24	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7SP1	25364	2023-02-17	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	11.67	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.005	0.84	0.0	0.05	19.70	0.01	2.173	18.69	0.20	12.4	87.6	0.0	-4.24	1.70	0.39	0.74	3.97	4343	540	17	20	0	0	0	logfile
✔	6VH7	21200	2023-02-17	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.003	0.75	0.0	0.05	16.44	0.00	2.317	9.92	0.71	5.9	94.1	0.0	-4.23	3.68	0.58	0.66	1.63	4878	642	6	0	0	0	0	logfile
✔	7Q66	13853	2023-02-17	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile
✔	5Lii	4053	2023-02-15	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	7U13	26276	2023-02-17	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	0.96	0.0	0.06	18.45	0.00	2.194	14.61	3.67	12.3	87.7	0.0	-4.21	6.72	0.33	0.56	1.63	3456	405	6	0	12	0	0	logfile
✔	7NSL	12570	2023-02-18	2021-03-08	3.1	3.25	2.92	3.2	0.012	1.84	0.0	0.08	14.48	0.01	2.367	4.69	0.00	3.7	96.3	0.0	-5.51	0.54	0.77	3.94	3.2	0.005	0.71	0.0	0.04	17.33	0.00	2.133	7.46	0.87	8.6	91.4	0.0	-4.19	0.99	0.56	0.82	3.20	8323	595	7	0	0	0	4053	logfile
✔	7QiG	13989	2023-02-17	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.003	0.64	0.0	0.05	17.73	0.00	2.134	6.24	0.87	10.0	90.0	0.0	-4.19	0.62	0.38	0.87	5.69	3213	396	3	0	0	0	0	logfile
✔	6L2T	0814	2023-02-21	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.005	0.77	0.0	0.05	12.54	0.01	2.083	8.68	0.00	17.6	82.3	0.1	-4.18	0.52	0.61	0.77	—	13604	1889	3	0	0	0	0	logfile
✔	7P6E	13227	2023-02-18	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.005	0.72	0.0	0.05	13.11	0.00	2.134	11.17	0.21	8.3	91.7	0.0	-4.15	2.70	0.51	0.79	4.06	8090	1050	10	0	0	0	0	logfile
✔	7U14	26277	2023-02-17	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.005	0.89	0.0	0.06	15.63	0.00	2.096	17.01	0.00	12.5	87.5	0.0	-4.13	1.60	0.34	0.62	—	3456	405	6	0	12	0	0	logfile
✔	7NCH	12266	2023-02-20	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.70	2.0	0.05	15.63	0.00	1.978	9.23	0.00	11.2	88.8	0.0	-4.13	1.66	0.64	0.52	2.25	11292	816	12	0	0	0	5796	logfile
✔	6RT0	4994	2023-02-17	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile
✔	7KVE	23048	2023-02-20	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.23	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.004	0.75	0.0	0.05	16.56	0.01	2.115	14.36	0.33	15.8	84.2	0.0	-4.11	1.22	0.75	0.74	2.41	11142	1374	1	0	0	0	0	logfile

• ← previous
• Page 5 of 353
• next →