Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RT0	4994	2023-08-09	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile
✔	6RTB	4996	2023-08-09	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.004	0.76	0.0	0.05	15.59	0.00	2.167	12.95	1.53	17.5	82.5	0.0	-4.08	0.60	0.62	0.80	3.79	4681	699	10	0	0	0	0	logfile
✔	7KVE	23048	2023-08-12	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.05	16.52	0.01	2.162	12.03	0.08	12.6	87.4	0.0	-4.06	1.20	0.75	0.73	2.24	11142	1374	1	0	0	0	0	logfile
✔	6L1T	0801	2023-08-10	2019-09-30	3.22	3.42	—	3.4	0.011	0.92	0.0	0.06	14.06	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.005	0.73	0.0	0.05	16.05	0.00	2.215	11.78	0.44	10.0	90.0	0.0	-4.06	1.41	0.49	0.86	3.50	7010	1000	10	0	0	0	0	logfile
✔	6DJP	7939	2023-08-10	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	4.72	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.16	0.01	2.172	17.74	0.00	22.8	77.2	0.1	-4.06	1.20	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	5ANC	3147	2023-08-26	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.62	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.005	0.90	0.0	0.05	17.64	0.01	2.064	23.42	0.00	15.3	83.7	1.0	-4.04	1.59	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	5XLo	6729	2023-08-14	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.24	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile
✔	8BG9	16027	2023-08-09	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	6M1D	30041	2023-08-16	2020-02-25	4.5	6.53	—	4.6	0.005	1.20	0.0	0.06	18.16	0.01	2.043	20.67	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	4.6	0.005	1.04	0.0	0.05	14.90	0.01	0.441	31.95	0.00	11.3	88.3	0.4	-4.03	0.67	0.68	0.70	—	21776	2706	4	0	0	0	0	logfile
✔	6EZo	4162	2023-08-15	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.97	0.0	0.05	10.23	0.01	1.979	9.01	0.00	23.2	76.5	0.3	-4.02	0.46	0.78	0.78	—	18758	3367	11	0	1	0	0	logfile
✔	7TD6	25824	2023-08-09	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile
✔	7o7S	12755	2023-08-25	2021-04-13	4.3	4.69	—	4.4	0.009	1.28	7.0	0.07	16.80	0.02	1.857	21.65	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.92	0.0	0.05	14.96	0.01	2.066	26.19	0.00	13.7	86.2	0.1	-3.99	2.51	0.76	0.60	—	41466	5236	17	0	44	0	0	logfile
✔	7X0T	32924	2023-08-11	2022-02-22	3.3	3.58	—	3.6	0.010	1.31	3.0	0.09	15.37	0.01	2.217	7.12	1.87	9.9	89.8	0.2	-5.80	0.64	0.81	2.49	3.6	0.003	0.68	0.0	0.04	16.37	0.00	2.281	7.51	0.37	7.6	92.4	0.0	-3.99	0.95	0.62	0.83	1.90	10189	1266	4	0	2	0	0	logfile
✔	7RFP	24444	2023-08-09	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	7V4A	31705	2023-08-09	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.60	0.0	0.05	16.38	0.00	2.347	6.77	0.61	11.8	88.2	0.0	-3.97	1.70	0.42	0.81	3.13	1653	240	3	0	0	0	0	logfile
✔	6LNi	0931	2023-08-09	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	7BW7	30229	2023-08-10	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.003	0.79	0.0	0.05	15.12	0.00	2.151	18.52	0.00	13.1	86.9	0.0	-3.97	0.75	0.70	0.62	—	8824	1091	3	0	0	0	0	logfile
✔	8A7P	15223	2023-08-09	2022-06-21	3.4	3.32	3.49	3.5	0.002	0.54	0.0	0.04	10.48	0.01	2.313	6.43	1.83	4.7	95.3	0.0	-3.55	0.44	0.77	3.05	3.5	0.005	0.79	0.0	0.05	14.82	0.00	2.192	10.13	1.02	10.6	89.4	0.0	-3.96	0.80	0.45	0.81	3.02	4320	522	6	0	0	0	0	logfile
✔	7PY2	13708	2023-08-09	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.006	0.92	0.0	0.05	18.12	0.00	2.134	2.20	2.50	5.2	94.8	0.0	-3.96	1.38	0.49	0.88	5.69	2152	316	4	0	0	0	0	logfile
✔	6ZQA	11357	2023-08-17	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.011	1.41	0.0	0.06	16.91	0.01	1.638	24.83	0.00	20.3	79.5	0.2	-3.96	1.34	0.76	0.75	—	125991	19047	63	1485	5	0	0	logfile

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