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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Wi6 | 32526 | 2022-12-12 | 2022-01-03 | 3.71 | 4.33 | — | 4.2 | 0.009 | 1.02 | 0.0 | 0.06 | 14.53 | 0.01 | 2.290 | 5.63 | 1.54 | 14.5 | 85.5 | 0.0 | -6.21 | 0.76 | 0.78 | 1.96 | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.83 | 0.00 | 2.211 | 7.53 | 0.26 | 9.4 | 90.6 | 0.0 | -3.86 | 0.43 | 0.76 | 0.77 | 1.69 | 9696 | 1446 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 5YYS | 6859 | 2022-12-15 | 2017-12-11 | 4.2 | 4.57 | — | 4.1 | 0.016 | 2.26 | 0.0 | 0.10 | 15.30 | 0.01 | 2.201 | 22.76 | 2.34 | 27.3 | 70.1 | 2.6 | -5.98 | 0.85 | 0.71 | — | 4.1 | 0.004 | 1.30 | 0.0 | 0.06 | 12.61 | 0.01 | 2.137 | 30.23 | 0.00 | 21.8 | 77.7 | 0.5 | -3.85 | 1.67 | 0.86 | 0.72 | — | 24044 | 3244 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCH | 12266 | 2022-12-12 | 2021-01-28 | 3.84 | 3.76 | 3.69 | 3.8 | 0.013 | 1.61 | 2.0 | 0.10 | 14.68 | 0.00 | 2.485 | 0.00 | 0.19 | 9.4 | 90.6 | 0.0 | -3.70 | 0.60 | 0.45 | 2.36 | 3.8 | 0.003 | 0.65 | 2.0 | 0.05 | 15.39 | 0.00 | 2.034 | 7.72 | 0.19 | 10.3 | 89.7 | 0.0 | -3.84 | 1.65 | 0.64 | 0.52 | 2.46 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 6NYF | 0542 | 2022-12-19 | 2019-02-11 | 3.2 | 3.97 | — | 3.8 | 0.007 | 0.99 | 0.0 | 0.06 | 10.44 | 0.01 | 2.263 | 6.08 | 0.32 | 12.9 | 87.1 | 0.0 | -5.20 | 0.82 | 0.80 | 3.21 | 3.8 | 0.003 | 0.65 | 0.0 | 0.05 | 12.49 | 0.00 | 2.208 | 11.52 | 0.30 | 12.0 | 88.0 | 0.0 | -3.84 | 1.59 | 0.80 | 0.77 | 2.80 | 34332 | 4500 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oSJ | 20183 | 2022-12-11 | 2019-05-01 | 2.8 | 2.81 | — | 2.8 | 0.011 | 1.13 | 0.0 | 0.07 | 13.69 | 0.00 | 2.227 | 10.71 | 0.00 | 18.6 | 79.7 | 1.7 | -4.71 | 0.50 | 0.79 | 4.82 | 2.8 | 0.003 | 0.75 | 0.0 | 0.06 | 16.79 | 0.00 | 2.235 | 9.22 | 5.81 | 13.4 | 86.6 | 0.0 | -3.82 | 0.47 | 0.51 | 0.79 | 4.30 | 4210 | 610 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo5 | 26640 | 2022-12-13 | 2022-04-12 | 3.1 | 3.62 | 3.02 | 3.0 | 0.015 | 2.22 | 0.0 | 0.12 | 27.60 | 0.06 | 2.328 | 2.33 | 1.02 | 6.4 | 92.7 | 0.9 | -2.73 | 0.80 | 0.60 | 3.19 | 3.0 | 0.005 | 0.85 | 0.0 | 0.05 | 26.36 | 0.01 | 1.782 | 36.53 | 0.00 | 14.5 | 84.5 | 0.9 | -3.81 | 1.53 | 0.81 | 0.66 | 1.33 | 13979 | 112 | 2 | 373 | 7 | 0 | 5024 | logfile |
✔ | 6WUN | 21917 | 2022-12-12 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.005 | 0.80 | 0.0 | 0.04 | 15.06 | 0.00 | 2.095 | 12.52 | 0.28 | 16.7 | 83.2 | 0.2 | -3.80 | 0.54 | 0.68 | 0.79 | 1.41 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BBM | 7076 | 2022-12-15 | 2017-10-18 | 4.1 | 4.24 | — | 4.1 | 0.008 | 1.20 | 0.0 | 0.06 | 16.70 | 0.01 | 2.231 | 9.95 | 0.58 | 13.8 | 86.1 | 0.2 | -5.97 | 0.74 | 0.74 | — | 4.1 | 0.005 | 0.85 | 0.0 | 0.05 | 15.33 | 0.00 | 2.116 | 20.53 | 0.00 | 15.0 | 85.0 | 0.0 | -3.80 | 0.77 | 0.75 | 0.75 | — | 23956 | 2662 | 15 | 0 | 623 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2022-12-13 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.54 | 0.01 | 2.091 | 23.54 | 0.07 | 17.5 | 82.4 | 0.1 | -3.80 | 1.19 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2022-12-11 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.004 | 0.87 | 0.0 | 0.05 | 13.76 | 0.01 | 2.185 | 26.97 | 0.00 | 14.2 | 85.8 | 0.0 | -3.79 | 2.09 | 0.58 | 0.69 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o7L | 12747 | 2022-12-21 | 2021-04-13 | 4.5 | 5.42 | — | 6.7 | 0.007 | 1.15 | 8.0 | 0.08 | 16.00 | 0.02 | 2.027 | 13.50 | 0.49 | 16.8 | 82.5 | 0.7 | -5.47 | 0.80 | 0.63 | — | 6.6 | 0.003 | 0.86 | 0.0 | 0.05 | 14.76 | 0.01 | 2.041 | 23.79 | 0.04 | 13.5 | 86.3 | 0.2 | -3.79 | 1.51 | 0.81 | 0.68 | — | 44614 | 5640 | 14 | 0 | 44 | 0 | 0 | logfile |
✔ | 6VFE | 21160 | 2022-12-12 | 2020-01-03 | 3.9 | 4.13 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 15.07 | 0.00 | 2.120 | 12.86 | 0.03 | 8.3 | 91.7 | 0.0 | -3.02 | 0.83 | 0.74 | 1.40 | 4.0 | 0.005 | 0.80 | 0.0 | 0.05 | 17.12 | 0.00 | 2.079 | 17.46 | 0.45 | 14.4 | 85.6 | 0.0 | -3.79 | 0.57 | 0.84 | 0.76 | 1.24 | 61908 | 7887 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LLK | 23424 | 2022-12-20 | 2021-02-04 | 4.8 | 7.00 | 4.88 | 4.8 | 0.014 | 2.12 | 14.0 | 0.12 | 15.77 | 0.02 | 2.051 | 2.46 | 4.52 | 12.6 | 84.8 | 2.6 | -3.42 | 0.81 | 0.73 | — | 4.8 | 0.006 | 0.85 | 0.0 | 0.05 | 13.38 | 0.01 | 1.739 | 35.22 | 0.19 | 16.8 | 82.8 | 0.5 | -3.78 | 0.89 | 0.84 | 0.79 | — | 38982 | 2397 | 47 | 0 | 108 | 0 | 18627 | logfile |
✔ | 6RT0 | 4994 | 2022-12-11 | 2019-05-22 | 3.1 | 3.18 | — | 3.1 | 0.006 | 0.97 | 0.0 | 0.06 | 14.23 | 0.00 | 2.415 | 2.11 | 1.06 | 11.5 | 88.5 | 0.0 | -3.76 | 0.71 | 0.84 | 6.51 | 3.1 | 0.004 | 0.68 | 0.0 | 0.05 | 16.18 | 0.00 | 2.246 | 4.31 | 0.00 | 10.1 | 89.9 | 0.0 | -3.78 | 0.83 | 0.72 | 0.86 | 5.75 | 4925 | 735 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VPS | 21316 | 2022-12-11 | 2020-02-04 | 2.6 | 2.62 | 2.52 | 2.7 | 0.011 | 1.14 | 10.0 | 0.13 | 20.44 | 0.01 | 2.501 | 19.04 | 0.00 | 6.9 | 93.1 | 0.0 | -3.61 | 0.49 | 0.90 | 6.11 | 2.7 | 0.004 | 0.53 | 0.0 | 0.03 | 20.06 | 0.00 | 2.403 | 4.27 | 0.98 | 6.9 | 93.1 | 0.0 | -3.78 | 1.19 | 0.48 | 0.87 | 6.47 | 2736 | 279 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3C | 0334 | 2022-12-11 | 2018-11-14 | 3.3 | 3.53 | — | 3.5 | 0.009 | 1.31 | 0.0 | 0.07 | 14.00 | 0.00 | 2.387 | 18.47 | 0.00 | 11.5 | 88.5 | 0.0 | -5.01 | 0.52 | 0.83 | 4.06 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 15.70 | 0.00 | 2.372 | 12.69 | 1.58 | 8.2 | 91.8 | 0.0 | -3.77 | 2.40 | 0.52 | 0.83 | 3.93 | 4260 | 640 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BoY | 30136 | 2022-12-20 | 2020-03-20 | 3.8 | 3.79 | — | 3.8 | 0.008 | 1.49 | 0.0 | 0.07 | 12.88 | 0.01 | 1.717 | 15.08 | 1.21 | 16.1 | 82.7 | 1.1 | -5.15 | 0.84 | 0.83 | 2.69 | 3.7 | 0.004 | 0.96 | 0.0 | 0.05 | 15.75 | 0.00 | 2.084 | 21.80 | 0.56 | 17.5 | 82.3 | 0.3 | -3.77 | 1.56 | 0.85 | 0.85 | 2.26 | 37794 | 4740 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2022-12-13 | 2015-02-19 | 2.6 | 3.84 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.104 | 287.40 | 6.86 | 1.3 | 98.0 | 0.8 | 1.95 | 0.60 | 0.63 | 2.26 | 3.6 | 0.032 | 2.66 | 41.0 | 0.17 | 20.84 | 0.02 | 1.083 | 172.48 | 7.64 | 19.4 | 79.1 | 1.5 | -3.76 | 4.12 | 0.56 | 0.66 | 1.10 | 13084 | 1588 | 4 | 0 | 20 | 420 | 0 | logfile |
✔ | 6SJ6 | 10212 | 2022-12-15 | 2019-08-12 | 3.23 | 3.28 | — | 3.2 | 0.010 | 1.05 | 0.0 | 0.06 | 17.17 | 0.01 | 1.886 | 4.35 | 0.14 | 17.7 | 82.2 | 0.2 | -6.09 | 0.78 | 0.78 | 3.43 | 3.2 | 0.004 | 0.73 | 0.0 | 0.04 | 17.09 | 0.01 | 1.880 | 8.16 | 0.46 | 11.6 | 88.4 | 0.0 | -3.76 | 2.00 | 0.79 | 0.80 | 2.36 | 78296 | 2611 | 27 | 2697 | 59 | 0 | 0 | logfile |
✔ | 7WRQ | 32735 | 2022-12-11 | 2022-01-27 | 3.6 | 4.08 | 3.17 | 3.8 | 0.011 | 1.28 | 1.0 | 0.07 | 14.49 | 0.02 | 2.357 | 1.04 | 1.06 | 19.9 | 79.6 | 0.5 | -5.87 | 0.86 | 0.85 | 2.08 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.60 | 0.00 | 2.270 | 4.09 | 0.00 | 10.0 | 89.9 | 0.1 | -3.72 | 0.62 | 0.87 | 0.87 | 1.97 | 6247 | 798 | 5 | 0 | 7 | 0 | 0 | logfile |