Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Wi6	32526	2022-12-12	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	14.53	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.003	0.62	0.0	0.04	14.83	0.00	2.211	7.53	0.26	9.4	90.6	0.0	-3.86	0.43	0.76	0.77	1.69	9696	1446	4	0	4	0	0	logfile
✔	5YYS	6859	2022-12-15	2017-12-11	4.2	4.57	—	4.1	0.016	2.26	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.004	1.30	0.0	0.06	12.61	0.01	2.137	30.23	0.00	21.8	77.7	0.5	-3.85	1.67	0.86	0.72	—	24044	3244	4	0	0	0	0	logfile
✔	7NCH	12266	2022-12-12	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.39	0.00	2.034	7.72	0.19	10.3	89.7	0.0	-3.84	1.65	0.64	0.52	2.46	11292	816	12	0	0	0	5796	logfile
✔	6NYF	0542	2022-12-19	2019-02-11	3.2	3.97	—	3.8	0.007	0.99	0.0	0.06	10.44	0.01	2.263	6.08	0.32	12.9	87.1	0.0	-5.20	0.82	0.80	3.21	3.8	0.003	0.65	0.0	0.05	12.49	0.00	2.208	11.52	0.30	12.0	88.0	0.0	-3.84	1.59	0.80	0.77	2.80	34332	4500	6	0	0	0	0	logfile
✔	6oSJ	20183	2022-12-11	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.51	0.79	4.30	4210	610	10	0	0	0	0	logfile
✔	7Uo5	26640	2022-12-13	2022-04-12	3.1	3.62	3.02	3.0	0.015	2.22	0.0	0.12	27.60	0.06	2.328	2.33	1.02	6.4	92.7	0.9	-2.73	0.80	0.60	3.19	3.0	0.005	0.85	0.0	0.05	26.36	0.01	1.782	36.53	0.00	14.5	84.5	0.9	-3.81	1.53	0.81	0.66	1.33	13979	112	2	373	7	0	5024	logfile
✔	6WUN	21917	2022-12-12	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.80	0.0	0.04	15.06	0.00	2.095	12.52	0.28	16.7	83.2	0.2	-3.80	0.54	0.68	0.79	1.41	10082	1326	4	0	0	0	0	logfile
✔	6BBM	7076	2022-12-15	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.95	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	4.1	0.005	0.85	0.0	0.05	15.33	0.00	2.116	20.53	0.00	15.0	85.0	0.0	-3.80	0.77	0.75	0.75	—	23956	2662	15	0	623	0	0	logfile
✔	6GJ1	0009	2022-12-13	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.54	0.01	2.091	23.54	0.07	17.5	82.4	0.1	-3.80	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	7SWN	25476	2022-12-11	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.004	0.87	0.0	0.05	13.76	0.01	2.185	26.97	0.00	14.2	85.8	0.0	-3.79	2.09	0.58	0.69	—	3283	422	3	0	0	0	0	logfile
✔	7o7L	12747	2022-12-21	2021-04-13	4.5	5.42	—	6.7	0.007	1.15	8.0	0.08	16.00	0.02	2.027	13.50	0.49	16.8	82.5	0.7	-5.47	0.80	0.63	—	6.6	0.003	0.86	0.0	0.05	14.76	0.01	2.041	23.79	0.04	13.5	86.3	0.2	-3.79	1.51	0.81	0.68	—	44614	5640	14	0	44	0	0	logfile
✔	6VFE	21160	2022-12-12	2020-01-03	3.9	4.13	—	4.0	0.003	0.75	0.0	0.05	15.07	0.00	2.120	12.86	0.03	8.3	91.7	0.0	-3.02	0.83	0.74	1.40	4.0	0.005	0.80	0.0	0.05	17.12	0.00	2.079	17.46	0.45	14.4	85.6	0.0	-3.79	0.57	0.84	0.76	1.24	61908	7887	33	0	0	0	0	logfile
✔	7LLK	23424	2022-12-20	2021-02-04	4.8	7.00	4.88	4.8	0.014	2.12	14.0	0.12	15.77	0.02	2.051	2.46	4.52	12.6	84.8	2.6	-3.42	0.81	0.73	—	4.8	0.006	0.85	0.0	0.05	13.38	0.01	1.739	35.22	0.19	16.8	82.8	0.5	-3.78	0.89	0.84	0.79	—	38982	2397	47	0	108	0	18627	logfile
✔	6RT0	4994	2022-12-11	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.004	0.68	0.0	0.05	16.18	0.00	2.246	4.31	0.00	10.1	89.9	0.0	-3.78	0.83	0.72	0.86	5.75	4925	735	10	0	0	0	0	logfile
✔	6VPS	21316	2022-12-11	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.87	6.47	2736	279	9	0	0	0	0	logfile
✔	6N3C	0334	2022-12-11	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.003	0.68	0.0	0.04	15.70	0.00	2.372	12.69	1.58	8.2	91.8	0.0	-3.77	2.40	0.52	0.83	3.93	4260	640	20	0	0	0	0	logfile
✔	7BoY	30136	2022-12-20	2020-03-20	3.8	3.79	—	3.8	0.008	1.49	0.0	0.07	12.88	0.01	1.717	15.08	1.21	16.1	82.7	1.1	-5.15	0.84	0.83	2.69	3.7	0.004	0.96	0.0	0.05	15.75	0.00	2.084	21.80	0.56	17.5	82.3	0.3	-3.77	1.56	0.85	0.85	2.26	37794	4740	6	0	0	0	0	logfile
✔	3J9S	6272	2022-12-13	2015-02-19	2.6	3.84	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.104	287.40	6.86	1.3	98.0	0.8	1.95	0.60	0.63	2.26	3.6	0.032	2.66	41.0	0.17	20.84	0.02	1.083	172.48	7.64	19.4	79.1	1.5	-3.76	4.12	0.56	0.66	1.10	13084	1588	4	0	20	420	0	logfile
✔	6SJ6	10212	2022-12-15	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	17.17	0.01	1.886	4.35	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.004	0.73	0.0	0.04	17.09	0.01	1.880	8.16	0.46	11.6	88.4	0.0	-3.76	2.00	0.79	0.80	2.36	78296	2611	27	2697	59	0	0	logfile
✔	7WRQ	32735	2022-12-11	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.28	1.0	0.07	14.49	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.71	0.0	0.04	15.60	0.00	2.270	4.09	0.00	10.0	89.9	0.1	-3.72	0.62	0.87	0.87	1.97	6247	798	5	0	7	0	0	logfile

• ← previous
• Page 7 of 443
• next →