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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NYJ | 0544 | 2024-03-15 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.004 | 0.68 | 0.0 | 0.05 | 12.78 | 0.00 | 2.219 | 12.48 | 1.92 | 14.5 | 85.5 | 0.0 | -3.95 | 0.58 | 0.84 | 0.80 | 2.93 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PY2 | 13708 | 2024-03-10 | 2021-10-08 | 2.59 | 2.64 | 1.54 | 2.7 | 0.015 | 1.83 | 0.0 | 0.08 | 17.26 | 0.01 | 2.423 | 1.71 | 2.00 | 9.1 | 90.9 | 0.0 | -5.22 | 0.45 | 0.84 | 6.05 | 2.8 | 0.007 | 0.93 | 0.0 | 0.05 | 17.99 | 0.00 | 2.349 | 2.69 | 8.50 | 5.2 | 94.8 | 0.0 | -3.95 | 1.39 | 0.49 | 0.88 | 6.22 | 2152 | 316 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oVT | 13089 | 2024-03-11 | 2021-06-15 | 2.69 | 2.94 | 2.42 | 2.8 | 0.017 | 1.67 | 0.0 | 0.10 | 13.71 | 0.01 | 2.550 | 2.09 | 0.00 | 3.0 | 97.0 | 0.0 | -3.46 | 0.53 | 0.82 | 6.84 | 2.8 | 0.008 | 0.70 | 0.0 | 0.04 | 17.65 | 0.00 | 2.257 | 7.32 | 3.82 | 7.8 | 92.2 | 0.0 | -3.94 | 0.48 | 0.56 | 0.86 | 6.50 | 6588 | 828 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2024-03-18 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.005 | 1.06 | 2.0 | 0.05 | 13.91 | 0.01 | 2.083 | 35.87 | 0.00 | 16.6 | 82.5 | 0.9 | -3.94 | 4.20 | 0.34 | 0.59 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYF | 0542 | 2024-03-22 | 2019-02-11 | 3.2 | 3.97 | — | 3.8 | 0.007 | 0.99 | 0.0 | 0.06 | 10.44 | 0.01 | 2.263 | 6.08 | 0.32 | 12.9 | 87.1 | 0.0 | -5.20 | 0.82 | 0.80 | 3.21 | 3.8 | 0.003 | 0.64 | 0.0 | 0.05 | 12.62 | 0.00 | 2.206 | 11.36 | 1.46 | 9.7 | 90.3 | 0.0 | -3.91 | 1.60 | 0.80 | 0.77 | 2.77 | 34332 | 4500 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WP1 | 32666 | 2024-03-10 | 2022-01-22 | 3.77 | 3.91 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 14.46 | 0.02 | 2.338 | 3.88 | 0.00 | 12.2 | 87.5 | 0.2 | -5.40 | 0.64 | 0.78 | 2.71 | 3.9 | 0.004 | 0.78 | 0.0 | 0.05 | 16.32 | 0.00 | 2.133 | 13.96 | 7.37 | 12.7 | 87.1 | 0.2 | -3.91 | 0.96 | 0.64 | 0.79 | 2.17 | 3305 | 423 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UN5 | 26613 | 2024-03-10 | 2022-04-08 | 3.13 | 3.63 | 3.08 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 14.46 | 0.00 | 2.387 | 11.64 | 0.51 | 7.0 | 93.0 | 0.0 | -3.83 | 0.40 | 0.80 | 4.50 | 3.6 | 0.005 | 0.75 | 0.0 | 0.04 | 15.00 | 0.00 | 2.264 | 9.55 | 3.85 | 7.7 | 92.3 | 0.0 | -3.90 | 1.12 | 0.34 | 0.74 | 4.85 | 4380 | 620 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2024-03-11 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 23.09 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.9 | 0.009 | 1.12 | 0.0 | 0.08 | 22.54 | 0.01 | 1.891 | 37.73 | 0.00 | 26.1 | 73.8 | 0.1 | -3.90 | 0.98 | 0.79 | 0.68 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 7CAH | 30331 | 2024-03-10 | 2020-06-08 | 3.9 | 4.13 | — | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 13.68 | 0.01 | 2.137 | 18.79 | 0.00 | 19.9 | 79.8 | 0.3 | -5.76 | 0.68 | 0.64 | 2.37 | 4.0 | 0.004 | 0.80 | 0.0 | 0.05 | 15.23 | 0.01 | 2.149 | 18.04 | 4.44 | 16.7 | 83.3 | 0.0 | -3.89 | 0.46 | 0.70 | 0.64 | 2.01 | 2889 | 404 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJ6 | 10212 | 2024-03-17 | 2019-08-12 | 3.23 | 3.28 | — | 3.2 | 0.010 | 1.05 | 0.0 | 0.06 | 23.89 | 0.01 | 1.886 | 4.33 | 0.14 | 17.7 | 82.2 | 0.2 | -6.09 | 0.78 | 0.78 | 3.43 | 3.2 | 0.005 | 0.77 | 0.0 | 0.04 | 23.53 | 0.01 | 1.849 | 8.52 | 4.64 | 13.2 | 86.8 | 0.0 | -3.89 | 2.00 | 0.80 | 0.80 | 2.38 | 78296 | 2611 | 27 | 2697 | 59 | 0 | 0 | logfile |
✔ | 8GF7 | 29980 | 2024-03-10 | 2023-03-07 | 4.8 | 3.61 | 4.18 | 4.4 | 0.003 | 0.68 | 0.0 | 0.06 | 10.15 | 0.00 | 1.681 | 53.15 | 0.00 | 10.2 | 89.8 | 0.0 | -4.11 | 0.33 | 0.53 | — | 4.4 | 0.004 | 1.03 | 0.0 | 0.06 | 14.16 | 0.00 | 2.361 | 17.41 | 0.00 | 18.2 | 81.8 | 0.0 | -3.89 | 2.04 | 0.35 | 0.59 | — | 3774 | 540 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8TER | 41198 | 2024-03-10 | 2023-07-06 | 2.59 | 2.80 | 2.25 | 2.8 | 0.007 | 0.89 | 0.0 | 0.05 | 18.43 | 0.01 | 2.289 | 10.67 | 0.00 | 6.1 | 93.9 | 0.0 | -4.34 | 0.66 | 0.90 | 5.78 | 2.8 | 0.009 | 0.75 | 0.0 | 0.05 | 20.13 | 0.00 | 2.173 | 3.05 | 6.21 | 5.8 | 94.2 | 0.0 | -3.89 | 0.85 | 0.67 | 0.91 | 6.78 | 5780 | 700 | 40 | 0 | 0 | 240 | 0 | logfile |
✔ | 6SoF | 10273 | 2024-03-21 | 2019-08-29 | 4.3 | 4.23 | 4.20 | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 14.59 | 0.01 | 2.017 | 10.51 | 0.62 | 17.7 | 82.3 | 0.0 | -5.47 | 0.82 | 0.72 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.38 | 0.00 | 1.979 | 15.26 | 0.00 | 13.9 | 86.1 | 0.0 | -3.88 | 1.44 | 0.82 | 0.72 | — | 30333 | 1966 | 12 | 0 | 0 | 0 | 14564 | logfile |
✔ | 7BW7 | 30229 | 2024-03-11 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.13 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.05 | 15.06 | 0.00 | 2.140 | 18.40 | 0.10 | 12.3 | 87.7 | 0.0 | -3.88 | 0.70 | 0.71 | 0.65 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GH8 | 40036 | 2024-03-11 | 2023-03-09 | 4.3 | 4.08 | 3.85 | 4.0 | 0.004 | 0.79 | 0.0 | 0.05 | 26.60 | 0.01 | 2.219 | 10.05 | 0.23 | 12.7 | 86.8 | 0.5 | -3.65 | 0.48 | 0.44 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 26.10 | 0.01 | 2.195 | 8.82 | 0.00 | 12.0 | 87.8 | 0.2 | -3.87 | 1.06 | 0.51 | 0.47 | — | 6991 | 559 | 8 | 136 | 0 | 0 | 0 | logfile |
✔ | 7oB4 | 12794 | 2024-03-14 | 2021-04-21 | 3.22 | 3.25 | — | 3.5 | 0.009 | 1.03 | 0.0 | 0.07 | 13.89 | 0.00 | 2.206 | 23.16 | 0.09 | 3.7 | 96.3 | 0.0 | -4.30 | 0.54 | 0.78 | 4.06 | 3.5 | 0.005 | 0.74 | 0.0 | 0.05 | 15.14 | 0.00 | 2.138 | 18.74 | 2.93 | 6.8 | 93.2 | 0.0 | -3.87 | 1.18 | 0.44 | 0.75 | 4.68 | 10066 | 1288 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L2T | 0814 | 2024-03-16 | 2019-10-06 | 4.1 | 4.14 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.05 | 12.33 | 0.00 | 2.222 | 5.89 | 0.15 | 13.8 | 86.0 | 0.2 | -5.72 | 0.61 | 0.76 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.05 | 12.47 | 0.01 | 2.155 | 6.63 | 0.00 | 14.7 | 85.3 | 0.1 | -3.87 | 0.49 | 0.60 | 0.76 | — | 13604 | 1889 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AWT | 15696 | 2024-03-10 | 2022-08-30 | 3.0 | 3.11 | 2.92 | 3.1 | 0.003 | 0.47 | 0.0 | 0.04 | 9.30 | 0.00 | 2.671 | 4.07 | 0.00 | 0.0 | 100.0 | 0.0 | -4.11 | 0.52 | 0.86 | 6.78 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 10.85 | 0.00 | 2.622 | 0.27 | 0.00 | 1.2 | 98.8 | 0.0 | -3.86 | 1.01 | 0.53 | 0.89 | 6.82 | 1910 | 260 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6H6B | 0148 | 2024-03-11 | 2018-07-26 | 3.4 | 3.13 | — | 3.5 | 0.008 | 1.10 | 0.0 | 0.20 | 8.13 | 0.00 | 2.530 | 5.82 | 0.00 | 14.3 | 85.7 | 0.0 | -4.80 | 0.44 | 0.74 | 5.60 | 3.2 | 0.004 | 0.88 | 0.0 | 0.18 | 11.91 | 0.00 | 2.144 | 4.95 | 3.50 | 18.6 | 81.4 | 0.0 | -3.86 | 1.82 | 0.41 | 0.78 | 3.96 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 8AZ7 | 15756 | 2024-03-10 | 2022-09-05 | 2.9 | 3.01 | 2.82 | 2.9 | 0.003 | 0.51 | 0.0 | 0.04 | 8.79 | 0.00 | 2.665 | 3.88 | 0.00 | 4.0 | 96.0 | 0.0 | -3.51 | 0.53 | 0.83 | 4.58 | 2.9 | 0.005 | 0.74 | 0.0 | 0.05 | 12.90 | 0.00 | 2.213 | 6.20 | 1.59 | 7.6 | 92.4 | 0.0 | -3.86 | 1.13 | 0.51 | 0.90 | 4.49 | 4010 | 540 | 20 | 0 | 20 | 0 | 0 | logfile |