Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LRC	23494	2021-12-01	2021-02-16	2.97	4.17	2.92	3.5	0.006	0.48	0.0	0.04	7.93	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.57	0.0	0.04	11.41	0.00	2.042	8.52	0.90	0.4	99.6	0.0	3.60	0.55	0.76	0.85	2.96	6202	762	6	0	6	0	0	logfile
✔	6VWK	21419	2021-12-01	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	3.5	0.004	0.70	0.0	0.04	15.34	0.00	2.285	6.61	0.24	2.2	97.8	0.0	3.53	1.22	0.64	0.84	1.42	8423	1133	13	0	0	0	0	logfile
✔	7P5M	13201	2021-12-01	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.55	0.0	0.04	14.29	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.016	1.49	1.0	0.04	17.09	0.01	1.835	13.48	0.46	0.9	99.1	0.0	3.87	0.43	0.54	0.77	0.92	6204	788	8	0	12	0	0	logfile
✘	6KNG	0731	2021-12-01	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✔	7Fii	31598	2021-12-01	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.52	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.57	0.0	0.04	9.50	0.00	2.272	5.60	0.00	3.6	96.4	0.0	1.07	0.67	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	6XLK	22246	2021-12-01	2020-06-28	3.3	3.63	—	3.5	0.033	0.79	0.0	0.10	20.17	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.005	0.65	0.0	0.04	20.64	0.00	1.959	12.00	0.00	0.8	99.2	0.0	-1.40	0.34	0.79	0.86	2.82	5456	536	6	46	4	0	0	logfile
✔	6YE4	10789	2021-12-01	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.52	0.0	0.03	16.50	0.00	2.347	5.02	0.22	2.4	97.6	0.0	3.50	0.93	0.67	0.87	1.40	9140	1180	10	0	5	0	0	logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7JVA	22497	2021-12-01	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.50	0.0	0.09	10.05	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.004	0.72	0.0	0.04	14.67	0.00	2.183	10.23	0.30	3.4	96.6	0.0	-0.06	0.68	0.85	0.82	2.50	3248	420	4	0	3	0	0	logfile
✔	6WRF	21882	2021-12-01	2020-04-29	3.14	3.69	—	3.5	0.011	0.86	0.0	0.05	13.25	0.01	1.975	3.32	0.07	1.0	99.0	0.0	-0.92	0.77	0.73	3.20	3.5	0.003	0.53	0.0	0.04	14.88	0.00	1.761	6.58	0.07	4.0	96.0	0.0	0.82	0.61	0.74	0.80	2.58	53851	3450	27	0	11	7	27016	logfile
✔	7N0K	24107	2021-12-01	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.018	1.70	1.0	0.04	19.20	0.01	1.444	14.45	0.19	2.1	97.9	0.0	2.92	0.63	0.59	0.75	1.24	5154	626	2	0	0	0	0	logfile
✔	6TKo	10515	2021-12-01	2019-11-28	3.3	3.40	3.22	3.6	0.005	0.51	0.0	0.04	12.62	0.00	2.079	2.87	0.23	1.0	99.0	0.0	-2.07	0.71	0.73	2.06	3.5	0.005	0.75	0.0	0.04	15.16	0.01	2.016	15.87	0.47	2.6	97.4	0.0	0.05	1.73	0.77	0.81	2.52	8085	1052	5	0	1	0	0	logfile
✔	6SLQ	10239	2021-12-02	2019-08-20	4.4	4.54	4.34	4.5	0.012	0.81	0.0	0.04	9.23	0.01	1.359	11.86	0.18	1.1	98.9	0.0	-1.02	0.63	0.72	—	4.5	0.004	0.80	0.0	0.05	13.25	0.01	2.106	15.30	0.00	3.9	96.1	0.0	0.02	1.20	0.65	0.76	—	10336	1320	6	0	0	0	0	logfile
✔	7E2Y	30972	2021-12-01	2021-02-07	3.0	3.40	—	3.4	0.008	1.04	0.0	0.21	12.43	0.01	2.050	4.50	0.00	1.1	98.9	0.0	1.91	0.53	0.68	1.09	3.4	0.013	1.34	1.0	0.04	15.97	0.00	1.944	12.78	1.49	2.5	97.5	0.0	1.08	0.59	0.53	0.73	1.68	6987	868	4	0	6	0	0	logfile
✔	6MRT	9212	2021-12-01	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26868	3420	12	0	0	0	0	logfile
✔	7oDR	12845	2021-12-01	2021-04-30	2.9	3.11	—	3.0	0.002	0.40	0.0	0.03	11.10	0.02	1.963	4.95	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.008	0.85	2.0	0.04	15.35	0.01	1.775	12.12	2.47	2.4	97.6	0.0	0.51	1.25	0.76	0.83	2.86	107464	9244	68	1489	135	0	0	logfile
✘	7NKZ	12451	2021-12-01	2021-02-19	2.5	2.68	2.48	2.6	0.006	0.73	1.0	0.04	13.30	0.00	1.216	11.51	0.63	1.1	98.9	0.0	0.48	0.70	0.88	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6424	792	4	0	5	42	0	logfile
✔	7E33	30975	2021-12-01	2021-02-07	2.9	3.20	—	3.2	0.004	0.45	0.0	0.04	12.31	0.00	1.918	6.52	0.00	1.2	98.8	0.0	2.41	0.63	0.73	2.39	3.2	0.003	0.60	0.0	0.04	15.88	0.00	2.117	10.99	1.39	3.0	97.0	0.0	1.08	1.57	0.64	0.79	2.71	8538	1086	5	0	1	0	0	logfile
✔	7LY0	23581	2021-12-01	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.009	0.82	0.0	0.04	15.47	0.01	2.156	8.66	2.50	2.1	97.9	0.0	0.63	1.63	0.70	0.76	4.04	2805	354	5	0	6	0	0	logfile
✘	5W7G	8780	2021-12-01	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	7.01	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53508	5397	44	504	0	0	0	logfile

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