Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EEP	28054	2023-09-28	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✔	7LQE	23483	2023-09-28	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.20	240.0	0.38	25.46	0.02	1.745	134.94	4.40	60.8	38.2	1.0	-8.67	1.67	0.65	0.89	2.25	6048	576	72	0	0	0	0	logfile
✔	7Q66	13853	2023-09-28	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile
✔	8EHR	28150	2023-09-28	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.002	0.48	0.0	0.04	15.23	0.00	2.320	4.65	0.37	0.9	99.1	0.0	1.26	1.17	0.58	0.87	3.27	7350	1022	7	0	0	0	0	logfile
✔	7YGB	33814	2023-09-29	2022-07-11	2.62	3.15	2.70	2.9	0.007	0.52	0.0	0.03	14.46	0.00	2.079	13.50	0.00	0.0	0.0	0.0	—	0.88	0.84	—	2.9	0.007	0.64	0.0	0.04	14.93	0.00	1.835	13.50	0.00	0.0	0.0	0.0	—	0.87	0.90	0.91	—	8738	0	5	407	54	0	0	logfile
✔	7YGC	33815	2023-09-29	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	14.76	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.59	0.0	0.03	15.59	0.00	1.931	14.86	0.00	0.0	0.0	0.0	—	1.48	0.92	0.91	—	8690	0	3	407	6	0	0	logfile
✔	7YG8	33811	2023-09-29	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	14.91	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.006	0.65	0.0	0.04	16.08	0.00	1.846	19.87	0.00	0.0	0.0	0.0	—	0.38	0.91	0.89	—	8440	0	3	395	5	0	0	logfile
✔	8BFB	16019	2023-09-27	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.008	0.62	0.0	0.05	17.53	0.00	2.364	6.10	0.00	2.8	97.2	0.0	-3.12	1.03	0.52	0.86	7.13	2860	380	10	0	0	0	0	logfile
✔	7R6N	24283	2023-09-28	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	17.22	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	17.79	0.01	1.759	18.24	0.00	0.0	0.0	0.0	—	1.27	0.58	0.76	—	7588	0	1	354	12	0	0	logfile
✔	8BFA	16018	2023-09-27	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.3	0.006	0.62	0.0	0.05	17.14	0.00	2.103	7.90	1.43	3.3	96.7	0.0	-2.68	1.99	0.53	0.89	6.48	2860	380	10	0	0	0	0	logfile
✔	7YGA	33813	2023-09-29	2022-07-11	2.35	3.08	2.44	2.8	0.008	0.62	0.0	0.04	15.23	0.01	1.779	10.87	0.00	0.0	0.0	0.0	—	0.89	0.87	—	2.8	0.007	0.60	0.0	0.04	15.26	0.00	1.499	12.63	0.00	0.0	0.0	0.0	—	0.17	0.89	0.88	—	8692	0	3	407	8	0	0	logfile
✔	7SAM	24952	2023-09-28	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	22.81	0.01	1.797	83.72	0.00	0.0	0.0	0.0	—	5.81	0.96	0.88	—	5399	0	1	169	0	0	1802	logfile
✔	7XD3	33134	2023-09-29	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.33	0.01	1.680	17.06	0.00	0.0	0.0	0.0	—	1.79	0.87	0.82	—	9062	0	1	423	28	0	0	logfile
✔	6A7F	6993	2023-09-30	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.71	0.0	0.04	17.78	0.00	2.148	14.92	0.41	0.7	99.3	0.0	1.97	2.06	0.60	0.86	-0.08	10830	1410	30	0	0	0	0	logfile
✔	7YGD	33816	2023-09-28	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	15.33	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	17.32	0.01	1.825	32.10	0.00	0.0	0.0	0.0	—	1.50	0.91	0.88	—	8313	0	3	389	6	0	0	logfile
✔	7URM	26714	2023-09-27	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.80	0.01	1.988	29.25	0.00	0.0	0.0	0.0	—	1.68	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7TD6	25824	2023-09-28	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile
✔	7YCG	33738	2023-09-29	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.67	0.0	0.04	15.91	0.00	1.847	33.58	0.00	0.0	0.0	0.0	—	0.32	0.95	0.90	—	8661	0	2	404	4	0	0	logfile
✔	6X5i	22051	2023-09-28	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	0.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	0.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	7R6L	24281	2023-09-28	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.007	0.74	0.0	0.04	16.42	0.01	1.881	7.63	0.00	0.0	0.0	0.0	—	0.08	0.63	0.86	—	7857	0	3	366	20	0	0	logfile

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