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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PBW | 13307 | 2022-05-13 | 2021-08-02 | 2.1 | 1.98 | — | 2.1 | 0.015 | 4.32 | 0.0 | 0.05 | 16.89 | 0.01 | 2.243 | 2.93 | 0.00 | 0.0 | 100.0 | 0.0 | 3.14 | 0.78 | 0.90 | 7.90 | 2.1 | 0.005 | 2.36 | 0.0 | 0.04 | 16.71 | 0.01 | 2.127 | 7.68 | 0.15 | 0.0 | 100.0 | 0.0 | 4.33 | 0.30 | 0.77 | 0.89 | 7.33 | 9500 | 873 | 54 | 0 | 81 | 230 | 0 | logfile |
✔ | 6WL0 | 21814 | 2022-05-13 | 2020-04-17 | 4.4 | 4.62 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 18.91 | 0.00 | 2.353 | 8.18 | 0.00 | 0.0 | 100.0 | 0.0 | -5.48 | 0.79 | 0.88 | — | 4.4 | 0.005 | 0.97 | 0.0 | 0.04 | 14.48 | 0.00 | 2.146 | 21.73 | 0.09 | 0.4 | 99.6 | 0.0 | 0.45 | 1.67 | 0.79 | 0.85 | — | 11480 | 1476 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WKX | 21812 | 2022-05-13 | 2020-04-17 | 4.2 | 4.31 | — | 4.2 | 0.006 | 0.59 | 0.0 | 0.04 | 15.11 | 0.00 | 2.298 | 2.52 | 0.00 | 0.0 | 100.0 | 0.0 | -3.67 | 0.77 | 0.90 | — | 4.2 | 0.004 | 0.66 | 0.0 | 0.04 | 16.54 | 0.00 | 2.187 | 8.89 | 0.00 | 0.0 | 100.0 | 0.0 | 4.22 | 1.00 | 0.77 | 0.89 | — | 12915 | 1575 | 105 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2022-05-12 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 22.86 | 0.01 | 1.817 | 83.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.89 | 0.95 | 0.86 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7LQH | 23486 | 2022-05-13 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.26 | 186.0 | 0.31 | 24.05 | 0.02 | 1.786 | 114.19 | 5.21 | 39.1 | 60.6 | 0.3 | -8.00 | 3.50 | 0.66 | 0.87 | 3.22 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PM3 | 13511 | 2022-05-12 | 2021-09-01 | 3.1 | 3.07 | 3.12 | 3.1 | 0.005 | 0.86 | 0.0 | 0.05 | 15.41 | 0.01 | 1.199 | 5.42 | 0.00 | 0.0 | 100.0 | 0.0 | -0.98 | 0.85 | 0.82 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8940 | 1113 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6WL1 | 21815 | 2022-05-13 | 2020-04-17 | 4.0 | 4.02 | — | 4.0 | 0.007 | 0.81 | 0.0 | 0.05 | 7.85 | 0.00 | 2.413 | 3.17 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.71 | 0.85 | — | 4.0 | 0.004 | 0.51 | 0.0 | 0.04 | 16.18 | 0.00 | 2.242 | 6.18 | 1.33 | 0.0 | 100.0 | 0.0 | 6.14 | 0.73 | 0.72 | 0.86 | — | 14612 | 1872 | 52 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2022-05-12 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.1 | 0.150 | 5.21 | 243.0 | 0.38 | 25.21 | 0.02 | 1.751 | 134.26 | 5.09 | 58.0 | 40.6 | 1.4 | -8.59 | 2.02 | 0.65 | 0.89 | 2.15 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2022-05-12 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.155 | 6.38 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.36 | 4.43 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.76 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LYT | 23601 | 2022-05-13 | 2021-03-08 | 2.9 | 2.52 | 2.91 | 3.0 | 0.014 | 0.55 | 0.0 | 0.04 | 18.87 | 0.03 | 2.087 | 7.23 | 0.33 | 0.0 | 100.0 | 0.0 | -1.59 | 0.82 | 0.80 | 2.24 | 3.0 | 0.003 | 0.83 | 0.0 | 0.04 | 19.92 | 0.00 | 1.307 | 8.69 | 2.15 | 4.8 | 95.2 | 0.0 | -0.19 | 1.22 | 0.83 | 0.82 | 2.95 | 14354 | 712 | 5 | 92 | 6 | 0 | 6722 | logfile |
✔ | 7QiM | 13990 | 2022-05-14 | 2021-12-15 | 4.5 | 3.91 | 4.55 | 4.3 | 0.009 | 1.34 | 0.0 | 0.06 | 16.22 | 0.01 | 1.508 | 18.84 | 0.00 | 0.0 | 100.0 | 0.0 | -2.74 | 0.59 | 0.72 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.05 | 14.01 | 0.01 | 1.939 | 18.61 | 0.00 | 5.1 | 94.9 | 0.0 | -0.80 | 1.24 | 0.59 | 0.73 | — | 15550 | 1860 | 12 | 0 | 180 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2022-05-13 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.34 | 179.0 | 0.30 | 23.65 | 0.02 | 1.811 | 119.39 | 4.40 | 35.9 | 64.1 | 0.0 | -7.99 | 1.64 | 0.67 | 0.86 | 3.88 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XL6 | 22235 | 2022-05-12 | 2020-06-28 | 3.0 | 3.41 | — | 3.3 | 0.033 | 0.71 | 0.0 | 0.10 | 20.19 | 0.00 | 2.257 | 5.42 | 0.00 | 0.0 | 100.0 | 0.0 | -1.93 | 0.76 | 0.83 | 2.94 | 3.3 | 0.006 | 0.81 | 0.0 | 0.07 | 20.85 | 0.01 | 2.004 | 11.44 | 0.61 | 0.0 | 100.0 | 0.0 | -1.45 | 0.27 | 0.75 | 0.84 | 3.03 | 5456 | 536 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2022-05-14 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 7EZ0 | 31385 | 2022-05-12 | 2021-06-01 | 3.14 | 3.26 | — | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 14.43 | 0.00 | 1.804 | 2.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.74 | 0.79 | — | 3.2 | 0.006 | 0.69 | 0.0 | 0.04 | 15.71 | 0.00 | 1.877 | 8.66 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.91 | 0.77 | 0.86 | — | 8306 | 0 | 1 | 387 | 27 | 0 | 0 | logfile |
✔ | 7LYS | 23600 | 2022-05-13 | 2021-03-08 | 3.05 | 2.55 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.65 | 0.00 | 1.976 | 5.89 | 0.17 | 0.0 | 100.0 | 0.0 | -1.46 | 0.83 | 0.83 | 2.05 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 18.40 | 0.00 | 2.017 | 6.11 | 0.00 | 3.3 | 96.7 | 0.0 | 1.18 | 0.35 | 0.83 | 0.84 | 2.09 | 13573 | 669 | 4 | 89 | 0 | 0 | 6374 | logfile |
✔ | 6WL8 | 21817 | 2022-05-15 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 14.63 | 0.00 | 2.281 | 14.04 | 0.00 | 0.5 | 99.5 | 0.0 | 3.46 | 2.62 | 0.74 | 0.87 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2022-05-14 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 7.0 | 0.004 | 1.14 | 0.0 | 0.05 | 18.10 | 0.00 | 2.005 | 26.86 | 0.63 | 1.3 | 98.7 | 0.0 | -0.41 | 3.86 | 0.67 | 0.84 | 0.10 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEH | 20020 | 2022-05-16 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.09 | 0.00 | 2.203 | 12.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.52 | 0.40 | 0.80 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2022-05-18 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.21 | 0.0 | 0.05 | 6.00 | 0.00 | 2.198 | 8.14 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.49 | 0.80 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |