Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5G2Y	3332	2021-06-02	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.00	0.0	0.05	24.02	0.01	1.984	73.74	0.00	0.0	0.0	0.0	—	3.29	0.90	0.79	—	13494	0	1	630	0	0	0	logfile
✔	4UQ8	2676	2021-06-03	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.51	0.0	0.41	5.93	0.00	2.133	43.42	0.00	0.0	0.0	0.0	—	2.30	0.62	0.84	—	28647	33	54	0	5686	0	0	logfile
✔	6LHW	0901	2021-06-02	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.51	0.00	2.045	44.59	0.00	0.0	0.0	0.0	—	3.27	0.81	0.80	—	7644	0	3	0	1541	0	0	logfile
✔	6oG3	20051	2021-06-01	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	7JSV	22460	2021-06-03	2020-08-16	3.9	3.98	—	4.0	0.019	1.51	0.0	0.10	10.55	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.76	0.0	0.04	16.05	0.00	2.149	11.34	0.33	0.6	99.4	0.0	0.32	0.94	0.64	0.83	2.66	22140	2706	82	0	41	0	0	logfile
✔	6TUP	10593	2021-06-03	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.4	0.034	2.29	0.0	0.20	26.66	0.01	0.685	106.74	1.62	3.4	96.6	0.0	-3.10	9.78	0.57	0.63	0.14	22400	2300	100	300	0	0	0	logfile
✔	6TUQ	10594	2021-06-02	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.72	0.0	0.04	12.41	0.00	2.368	12.09	0.06	0.4	99.6	0.0	-0.47	0.88	0.68	0.88	0.90	16100	2300	50	0	0	0	0	logfile
✔	6o1o	0454	2021-06-02	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.80	0.0	0.07	14.08	0.00	1.992	33.13	0.00	0.0	0.0	0.0	—	1.72	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6PoS	20418	2021-06-05	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.43	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.003	0.54	0.0	0.04	13.03	0.00	1.856	9.56	0.00	3.4	96.6	0.0	0.20	1.95	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	6WR2	21875	2021-06-04	2020-04-29	2.88	3.14	—	3.1	0.014	0.88	0.0	0.06	12.47	0.01	2.203	4.10	0.00	0.1	99.9	0.0	-0.06	0.51	0.71	2.95	3.1	0.003	0.54	0.0	0.04	17.25	0.00	1.992	5.95	1.26	1.9	98.1	0.0	1.15	1.34	0.72	0.89	4.00	42671	2729	34	0	0	14	21361	logfile
✔	6ZVJ	11458	2021-06-05	2020-07-24	3.8	3.00	—	3.1	0.010	1.34	7.0	0.07	17.39	0.01	1.731	5.46	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	2.8	0.003	0.68	0.0	0.04	17.51	0.00	1.955	14.06	0.60	6.2	93.8	0.0	-1.18	2.52	0.67	0.75	1.10	115020	10127	55	1720	9	0	0	logfile
✘	6XLA	22237	2021-06-01	2020-06-28	3.1	3.41	—	3.3	0.005	0.64	0.0	0.04	19.85	0.00	2.276	3.37	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5403	536	6	46	2	0	0	logfile
✔	6PP8	20422	2021-06-04	2019-07-05	4.12	4.53	—	4.3	0.003	0.72	0.0	0.04	12.10	0.01	2.116	2.90	0.00	0.2	99.8	0.0	-2.36	0.80	0.76	—	4.3	0.002	0.56	0.0	0.04	12.69	0.00	1.877	9.26	0.00	3.6	96.4	0.0	-0.42	1.07	0.82	0.80	—	32335	2078	13	0	13	0	16234	logfile
✔	6MDo	9102	2021-06-05	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.11	13.31	0.01	2.012	6.67	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.006	0.77	0.0	0.08	14.10	0.00	1.906	25.24	0.37	8.4	91.6	0.0	-1.90	1.62	0.87	0.85	0.06	45373	2843	13	0	11	0	22858	logfile
✔	6T90	10406	2021-06-02	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.46	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.003	0.60	0.0	0.03	26.61	0.00	2.065	9.07	0.26	1.1	98.9	0.0	3.01	2.22	0.86	0.87	2.55	13031	903	19	282	9	0	0	logfile
✔	6W1X	21516	2021-06-03	2020-03-04	3.9	4.01	—	3.9	0.011	0.99	0.0	0.08	8.95	0.01	1.879	4.50	0.06	0.3	99.7	0.0	-0.99	0.75	0.72	0.89	3.9	0.004	0.68	0.0	0.04	15.18	0.00	2.082	12.88	0.45	4.9	95.1	0.0	-0.38	1.61	0.81	0.82	1.85	21735	2874	12	60	0	0	0	logfile
✔	6P6F	20261	2021-06-06	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.005	0.89	0.0	0.05	13.97	0.01	2.266	20.39	0.00	1.7	98.3	0.0	-0.40	1.34	0.73	0.80	—	159840	21060	120	0	0	0	0	logfile
✔	6U1X	20614	2021-06-04	2019-08-17	3.0	3.37	3.11	3.3	0.004	0.55	0.0	0.04	10.38	0.00	1.986	3.73	0.11	0.3	99.7	0.0	-3.08	0.67	0.81	4.07	3.3	0.002	0.52	0.0	0.04	14.76	0.00	1.894	6.32	1.12	4.3	95.7	0.0	0.22	2.07	0.68	0.82	3.39	33529	2087	3	0	2	0	16768	logfile
✔	6T93	10408	2021-06-02	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.73	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.70	0.0	0.04	28.13	0.00	2.116	12.54	0.63	2.0	98.0	0.0	2.53	2.06	0.87	0.87	2.05	12199	758	10	302	0	0	0	logfile
✔	6C9i	7436	2021-06-03	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.75	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.003	0.41	0.0	0.04	15.04	0.00	2.218	4.57	0.16	0.0	100.0	0.0	3.94	2.43	0.74	0.89	3.70	23700	3087	24	0	0	0	0	logfile

• ← previous
• Page 2 of 253
• next →