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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PoM | 20416 | 2024-03-10 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 25.63 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.23 | 0.0 | 0.06 | 27.09 | 0.01 | 1.945 | 59.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.74 | 0.79 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 8EHR | 28150 | 2024-03-11 | 2022-09-14 | 3.2 | 2.95 | 3.03 | 3.1 | 0.003 | 0.55 | 0.0 | 0.05 | 13.08 | 0.00 | 2.374 | 2.29 | 0.00 | 0.0 | 100.0 | 0.0 | 1.82 | 0.58 | 0.85 | 3.24 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 15.58 | 0.00 | 2.317 | 3.78 | 2.69 | 0.9 | 99.1 | 0.0 | 1.31 | 1.16 | 0.58 | 0.87 | 3.15 | 7350 | 1022 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2024-03-16 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 18.29 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.012 | 1.72 | 0.0 | 0.07 | 17.09 | 0.00 | 1.997 | 30.54 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2024-03-15 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 24.65 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.72 | 0.0 | 0.04 | 24.99 | 0.01 | 1.910 | 21.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.48 | 0.77 | 0.77 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 8B3A | 15824 | 2024-03-10 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.009 | 1.88 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.079 | 6.11 | 24.0 | 0.43 | 24.10 | 0.05 | 1.656 | 300.95 | 53.33 | 52.7 | 4.0 | 43.3 | -10.74 | 2.56 | 0.43 | 0.58 | 3.10 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 8oL5 | 16949 | 2024-03-10 | 2023-03-30 | 3.4 | 3.10 | 1.47 | 3.0 | 0.003 | 0.44 | 0.0 | 0.06 | 9.97 | 0.00 | 2.393 | 2.17 | 0.00 | 0.0 | 100.0 | 0.0 | -0.75 | 0.53 | 0.87 | 5.76 | 3.0 | 0.002 | 0.37 | 0.0 | 0.05 | 15.49 | 0.00 | 2.326 | 3.70 | 3.91 | 2.1 | 97.9 | 0.0 | -1.20 | 1.02 | 0.55 | 0.88 | 5.14 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL2 | 16710 | 2024-03-18 | 2023-02-16 | 3.45 | 3.69 | 3.44 | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 12.07 | 0.01 | 2.192 | 3.59 | 0.00 | 0.0 | 100.0 | 0.0 | -0.83 | 0.54 | 0.79 | 2.49 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 17.16 | 0.00 | 2.192 | 9.41 | 1.97 | 2.1 | 97.9 | 0.0 | 1.49 | 2.42 | 0.56 | 0.83 | 1.20 | 13335 | 1725 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WKX | 21812 | 2024-03-15 | 2020-04-17 | 4.2 | 4.31 | — | 4.2 | 0.006 | 0.59 | 0.0 | 0.04 | 15.11 | 0.00 | 2.298 | 2.52 | 0.00 | 0.0 | 100.0 | 0.0 | -3.67 | 0.77 | 0.90 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 16.66 | 0.00 | 2.199 | 7.21 | 0.00 | 0.0 | 100.0 | 0.0 | 4.60 | 0.98 | 0.77 | 0.88 | — | 12915 | 1575 | 105 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iXJ | 35793 | 2024-03-16 | 2023-04-01 | 3.1 | 3.03 | 3.07 | 3.1 | 0.012 | 1.45 | 0.0 | 0.09 | 10.47 | 0.00 | 2.412 | 3.04 | 0.00 | 0.0 | 100.0 | 0.0 | 3.48 | 0.67 | 0.86 | 2.90 | 3.1 | 0.002 | 0.32 | 0.0 | 0.03 | 13.99 | 0.00 | 2.218 | 2.29 | 0.88 | 0.0 | 100.0 | 0.0 | 7.14 | 1.01 | 0.65 | 0.85 | 0.93 | 13760 | 1840 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3P | 15832 | 2024-03-17 | 2022-09-16 | 2.81 | 3.73 | 2.92 | 3.3 | 0.008 | 1.53 | 30.0 | 0.10 | 16.99 | 0.00 | 2.469 | 4.32 | 0.78 | 0.0 | 100.0 | 0.0 | -0.91 | 0.82 | 0.93 | 1.32 | 3.3 | 0.003 | 0.54 | 0.0 | 0.03 | 18.16 | 0.00 | 2.220 | 4.46 | 2.07 | 0.0 | 100.0 | 0.0 | 5.67 | 1.29 | 0.80 | 0.90 | 0.22 | 17620 | 2370 | 55 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XL6 | 22235 | 2024-03-10 | 2020-06-28 | 3.0 | 3.41 | — | 3.3 | 0.005 | 0.68 | 0.0 | 0.05 | 19.90 | 0.00 | 2.257 | 5.23 | 0.00 | 0.0 | 100.0 | 0.0 | -1.93 | 0.76 | 0.83 | 2.94 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 20.53 | 0.00 | 2.252 | 6.76 | 2.04 | 1.9 | 98.1 | 0.0 | 0.26 | 1.38 | 0.75 | 0.83 | 2.60 | 5456 | 536 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 7YCi | 33740 | 2024-03-11 | 2022-07-01 | 2.98 | 4.31 | 3.09 | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 24.35 | 0.00 | 1.521 | 15.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.84 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 24.57 | 0.00 | 1.865 | 23.49 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.95 | 0.90 | — | 8474 | 0 | 2 | 395 | 4 | 0 | 0 | logfile |
✔ | 7XSL | 33426 | 2024-03-15 | 2022-05-14 | 3.84 | 4.65 | 3.83 | 3.7 | 0.002 | 0.47 | 0.0 | 0.02 | 24.69 | 0.00 | 1.935 | 8.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.77 | — | 3.8 | 0.007 | 0.71 | 0.0 | 0.04 | 25.81 | 0.01 | 1.808 | 34.41 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.01 | 0.92 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7PTL | 13630 | 2024-03-19 | 2021-09-27 | 4.9 | 10.06 | 4.95 | — | 0.005 | 1.01 | 0.0 | 0.06 | 23.55 | 0.01 | 2.401 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.79 | — | — | 0.007 | 0.87 | 0.0 | 0.04 | 27.76 | 0.01 | 1.723 | 81.11 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.51 | 0.92 | 0.92 | — | 23080 | 0 | 1 | 720 | 0 | 0 | 7743 | logfile |
✔ | 6ULC | 20813 | 2024-03-18 | 2019-10-07 | 4.6 | 4.75 | — | 4.5 | 0.006 | 0.94 | 0.0 | 0.07 | 21.25 | 0.00 | 2.086 | 5.68 | 0.29 | 0.0 | 100.0 | 0.0 | -4.46 | 0.79 | 0.67 | — | 4.5 | 0.005 | 0.98 | 0.0 | 0.06 | 13.94 | 0.00 | 2.034 | 25.79 | 0.05 | 14.2 | 85.7 | 0.0 | -3.27 | 0.86 | 0.79 | 0.71 | — | 19968 | 2301 | 46 | 0 | 142 | 0 | 0 | logfile |
✔ | 7EZ2 | 31386 | 2024-03-11 | 2021-06-01 | 3.05 | 2.80 | — | 3.0 | 0.005 | 0.56 | 0.0 | 0.03 | 23.37 | 0.00 | 1.809 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.69 | 0.81 | — | 3.0 | 0.008 | 0.87 | 0.0 | 0.05 | 23.77 | 0.01 | 1.758 | 7.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.04 | 0.73 | 0.89 | — | 8698 | 0 | 3 | 406 | 31 | 0 | 0 | logfile |
✔ | 7YCH | 33739 | 2024-03-11 | 2022-07-01 | 3.09 | 4.46 | 3.30 | 3.5 | 0.002 | 0.48 | 0.0 | 0.02 | 24.19 | 0.00 | 1.420 | 15.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.84 | — | 3.6 | 0.007 | 0.67 | 0.0 | 0.04 | 24.32 | 0.00 | 1.812 | 30.74 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.94 | 0.88 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✔ | 7XSN | 33428 | 2024-03-11 | 2022-05-14 | 3.01 | 4.02 | 3.04 | 3.2 | 0.013 | 1.06 | 0.0 | 0.05 | 25.09 | 0.01 | 2.252 | 5.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.84 | — | 3.2 | 0.006 | 0.63 | 0.0 | 0.03 | 24.73 | 0.00 | 2.107 | 21.06 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.26 | 0.92 | 0.88 | — | 8279 | 0 | 1 | 387 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2024-03-16 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 22.50 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 28.52 | 0.01 | 1.951 | 72.85 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.98 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 7LYS | 23600 | 2024-03-16 | 2021-03-08 | 3.05 | 2.55 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 20.02 | 0.00 | 1.976 | 5.82 | 0.17 | 0.0 | 100.0 | 0.0 | -1.46 | 0.83 | 0.83 | 2.05 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 20.39 | 0.00 | 2.003 | 6.34 | 1.05 | 3.8 | 96.2 | 0.0 | 1.22 | 0.34 | 0.83 | 0.84 | 2.13 | 13573 | 669 | 4 | 89 | 0 | 0 | 6374 | logfile |