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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8Q9F | 18279 | 2024-03-11 | 2023-08-20 | 1.91 | 1.89 | 1.88 | 1.9 | 0.011 | 1.78 | 0.0 | 0.09 | 10.30 | 0.01 | 2.515 | 0.00 | 0.00 | 0.2 | 99.8 | 0.0 | -2.15 | 0.31 | 0.73 | 7.64 | 1.9 | 0.003 | 0.62 | 0.0 | 0.05 | 14.82 | 0.00 | 2.068 | 3.45 | 0.56 | 2.2 | 97.8 | 0.0 | -2.05 | 1.20 | 0.43 | 0.86 | 7.13 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✘ | 7PMA | 13526 | 2024-03-14 | 2021-09-02 | 3.6 | 4.07 | 3.61 | 3.5 | 0.004 | 0.88 | 1.0 | 0.05 | 15.93 | 0.01 | 1.317 | 6.45 | 0.09 | 0.2 | 99.8 | 0.0 | -1.07 | 0.90 | 0.82 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10066 | 1249 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6XLA | 22237 | 2024-03-10 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.96 | 0.00 | 2.276 | 3.37 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 20.70 | 0.00 | 2.109 | 5.11 | 2.04 | 3.0 | 97.0 | 0.0 | -0.43 | 1.31 | 0.79 | 0.86 | 2.97 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |
✔ | 7PMi | 13535 | 2024-03-15 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.17 | 2.0 | 0.07 | 15.80 | 0.01 | 1.306 | 5.04 | 0.09 | 0.2 | 99.8 | 0.0 | -1.50 | 0.92 | 0.84 | 2.97 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.73 | 0.00 | 2.017 | 7.56 | 0.46 | 1.5 | 98.5 | 0.0 | 1.35 | 0.66 | 0.94 | 0.88 | 2.56 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6ZVJ | 11458 | 2024-03-12 | 2020-07-24 | 3.8 | 3.00 | — | 3.1 | 0.010 | 1.33 | 7.0 | 0.07 | 21.45 | 0.01 | 1.731 | 5.46 | 1.39 | 0.2 | 99.8 | 0.0 | -4.19 | 0.59 | 0.64 | 1.31 | 2.9 | 0.004 | 0.70 | 2.0 | 0.04 | 21.44 | 0.00 | 1.403 | 13.94 | 3.42 | 5.2 | 94.7 | 0.0 | -0.80 | 1.28 | 0.67 | 0.75 | 0.95 | 115020 | 10127 | 55 | 1720 | 9 | 0 | 0 | logfile |
✔ | 7LMS | 23441 | 2024-03-10 | 2021-02-05 | 3.5 | 4.13 | 3.61 | 4.0 | 0.019 | 1.52 | 0.0 | 0.09 | 10.07 | 0.01 | 2.432 | 0.41 | 0.00 | 0.2 | 99.8 | 0.0 | 0.57 | 0.81 | 0.83 | 3.45 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.93 | 0.00 | 2.189 | 5.93 | 2.26 | 1.6 | 98.4 | 0.0 | 0.74 | 1.43 | 0.74 | 0.82 | 2.28 | 4947 | 613 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7PML | 13538 | 2024-03-15 | 2021-09-02 | 3.3 | 4.18 | 3.26 | 3.2 | 0.005 | 0.86 | 1.0 | 0.05 | 15.93 | 0.01 | 1.315 | 3.95 | 0.09 | 0.2 | 99.8 | 0.0 | -1.35 | 0.91 | 0.83 | 2.88 | 3.3 | 0.002 | 0.62 | 0.0 | 0.04 | 15.91 | 0.00 | 2.004 | 5.93 | 0.28 | 1.1 | 98.9 | 0.0 | 1.97 | 0.70 | 0.94 | 0.88 | 2.33 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PM1 | 13509 | 2024-03-15 | 2021-09-01 | 3.5 | 3.74 | 3.64 | 3.5 | 0.014 | 1.40 | 0.0 | 0.06 | 16.23 | 0.01 | 2.081 | 5.00 | 0.00 | 0.2 | 99.8 | 0.0 | -1.54 | 0.89 | 0.84 | 3.39 | 3.5 | 0.003 | 0.85 | 0.0 | 0.04 | 16.66 | 0.00 | 2.159 | 8.56 | 1.48 | 1.4 | 98.6 | 0.0 | 1.62 | 1.35 | 0.88 | 0.84 | 2.75 | 10169 | 1261 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PLY | 13506 | 2024-03-15 | 2021-09-01 | 3.2 | 3.79 | 3.37 | 3.5 | 0.016 | 1.49 | 0.0 | 0.07 | 15.96 | 0.01 | 2.228 | 3.82 | 0.00 | 0.2 | 99.8 | 0.0 | -1.06 | 0.89 | 0.85 | 2.92 | 3.6 | 0.003 | 0.85 | 0.0 | 0.04 | 16.66 | 0.00 | 2.076 | 6.64 | 0.55 | 1.2 | 98.8 | 0.0 | 1.75 | 0.68 | 0.85 | 0.84 | 1.93 | 10149 | 1258 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PM2 | 13510 | 2024-03-15 | 2021-09-01 | 3.6 | 3.83 | 3.61 | 3.6 | 0.014 | 1.42 | 0.0 | 0.06 | 16.76 | 0.01 | 2.085 | 4.75 | 0.00 | 0.2 | 99.8 | 0.0 | -1.45 | 0.89 | 0.84 | 2.55 | 3.6 | 0.003 | 0.86 | 0.0 | 0.04 | 17.13 | 0.00 | 1.984 | 8.02 | 1.29 | 1.7 | 98.3 | 0.0 | 1.58 | 1.72 | 0.89 | 0.85 | 2.25 | 10156 | 1259 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMC | 13528 | 2024-03-15 | 2021-09-02 | 3.7 | 4.09 | 3.62 | 3.5 | 0.008 | 1.07 | 1.0 | 0.06 | 16.21 | 0.01 | 1.317 | 7.05 | 0.09 | 0.2 | 99.8 | 0.0 | -1.41 | 0.89 | 0.80 | 2.38 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.07 | 0.00 | 2.038 | 10.02 | 1.48 | 1.5 | 98.5 | 0.0 | 1.73 | 1.34 | 0.90 | 0.82 | 1.72 | 10139 | 1258 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMD | 13529 | 2024-03-15 | 2021-09-02 | 2.9 | 4.01 | 2.83 | 3.4 | 0.012 | 1.06 | 1.0 | 0.06 | 15.52 | 0.01 | 1.314 | 3.61 | 0.09 | 0.2 | 99.8 | 0.0 | -1.33 | 0.94 | 0.88 | 3.40 | 3.5 | 0.002 | 0.67 | 0.0 | 0.04 | 15.43 | 0.00 | 2.048 | 6.08 | 0.37 | 1.5 | 98.5 | 0.0 | 1.73 | 1.27 | 0.93 | 0.87 | 2.96 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7M5o | 23678 | 2024-03-15 | 2021-03-24 | 3.54 | 2.81 | 3.58 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 18.45 | 0.00 | 1.978 | 10.65 | 1.25 | 0.2 | 99.8 | 0.0 | -2.03 | 0.79 | 0.75 | 1.08 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 19.38 | 0.00 | 2.059 | 12.79 | 3.56 | 4.0 | 96.0 | 0.0 | 0.38 | 1.23 | 0.79 | 0.76 | 1.43 | 11648 | 655 | 3 | 37 | 1 | 0 | 5635 | logfile |
✔ | 6PP8 | 20422 | 2024-03-22 | 2019-07-05 | 4.12 | 4.53 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.44 | 0.01 | 2.116 | 2.93 | 0.00 | 0.2 | 99.8 | 0.0 | -2.36 | 0.80 | 0.76 | — | 4.3 | 0.004 | 0.59 | 0.0 | 0.04 | 12.72 | 0.00 | 1.922 | 9.69 | 0.00 | 4.2 | 95.8 | 0.0 | -0.63 | 0.95 | 0.82 | 0.80 | — | 32335 | 2078 | 13 | 0 | 13 | 0 | 16234 | logfile |
✔ | 7QHH | 13972 | 2024-03-16 | 2021-12-12 | 3.6 | 3.51 | 3.48 | 3.6 | 0.014 | 1.83 | 0.0 | 0.09 | 13.09 | 0.01 | 2.546 | 3.81 | 0.19 | 0.3 | 99.6 | 0.1 | -0.83 | 0.66 | 0.74 | 3.73 | 3.5 | 0.010 | 0.77 | 0.0 | 0.05 | 14.13 | 0.00 | 2.172 | 11.85 | 3.02 | 2.0 | 98.0 | 0.0 | 0.69 | 1.30 | 0.65 | 0.73 | 2.85 | 13626 | 1982 | 12 | 0 | 14 | 0 | 0 | logfile |
✔ | 8ENQ | 28276 | 2024-03-10 | 2022-09-30 | 3.6 | 3.97 | 3.73 | 4.4 | 0.004 | 0.77 | 0.0 | 0.05 | 13.93 | 0.00 | 2.257 | 14.40 | 0.00 | 0.3 | 99.7 | 0.0 | 1.45 | 0.35 | 0.32 | 1.15 | 4.2 | 0.007 | 1.22 | 0.0 | 0.05 | 16.63 | 0.01 | 2.036 | 40.94 | 3.57 | 19.7 | 80.3 | 0.0 | -4.84 | 2.02 | 0.47 | 0.54 | 3.33 | 5593 | 777 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PM8 | 13524 | 2024-03-15 | 2021-09-02 | 3.5 | 3.91 | 3.50 | 3.4 | 0.004 | 0.88 | 1.0 | 0.05 | 15.70 | 0.01 | 1.316 | 6.40 | 0.09 | 0.3 | 99.7 | 0.0 | -1.60 | 0.90 | 0.83 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6C9i | 7436 | 2024-03-19 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 0.81 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.002 | 0.40 | 0.0 | 0.04 | 15.11 | 0.00 | 2.243 | 4.68 | 1.13 | 0.0 | 100.0 | 0.0 | 4.03 | 2.43 | 0.72 | 0.89 | 3.55 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PM5 | 13521 | 2024-03-15 | 2021-09-02 | 3.1 | 3.88 | 3.10 | 3.5 | 0.005 | 0.83 | 1.0 | 0.05 | 14.89 | 0.01 | 1.317 | 4.50 | 0.09 | 0.3 | 99.7 | 0.0 | -1.20 | 0.89 | 0.86 | 3.36 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.02 | 0.00 | 1.998 | 7.18 | 1.11 | 1.6 | 98.4 | 0.0 | 1.60 | 0.68 | 0.87 | 0.86 | 2.95 | 10171 | 1263 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6U1X | 20614 | 2024-03-22 | 2019-08-17 | 3.0 | 3.37 | 3.11 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 10.38 | 0.00 | 1.986 | 3.82 | 0.11 | 0.3 | 99.7 | 0.0 | -3.08 | 0.67 | 0.81 | 4.07 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 14.35 | 0.00 | 1.851 | 6.26 | 1.07 | 4.3 | 95.7 | 0.0 | 0.04 | 1.18 | 0.68 | 0.83 | 3.57 | 33529 | 2087 | 3 | 0 | 2 | 0 | 16768 | logfile |