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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ADY | 3133 | 2024-04-14 | 2015-08-25 | 4.5 | 4.75 | — | 4.5 | 0.011 | 1.28 | 0.0 | 0.06 | 24.87 | 0.01 | 1.391 | 57.89 | 0.21 | 11.7 | 81.7 | 6.7 | -3.35 | 0.72 | 0.63 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 23.62 | 0.00 | 1.907 | 21.64 | 0.00 | 10.2 | 88.8 | 1.1 | -2.78 | 1.12 | 0.86 | 0.83 | — | 97364 | 4197 | 35 | 3020 | 2 | 0 | 0 | logfile |
✔ | 6WHU | 21676 | 2024-04-11 | 2020-04-08 | 3.93 | 4.34 | — | 4.2 | 0.009 | 0.94 | 0.0 | 0.05 | 16.31 | 0.00 | 2.095 | 18.95 | 0.72 | 18.0 | 81.8 | 0.2 | -4.87 | 0.69 | 0.75 | 1.46 | 4.2 | 0.003 | 0.75 | 0.0 | 0.05 | 16.24 | 0.00 | 2.141 | 11.99 | 2.64 | 10.3 | 89.7 | 0.0 | -1.67 | 0.55 | 0.73 | 0.81 | 1.57 | 23368 | 3120 | 10 | 0 | 16 | 0 | 0 | logfile |
✔ | 6RAY | 4787 | 2024-04-16 | 2019-04-08 | 4.28 | 4.39 | 4.31 | 4.4 | 0.013 | 1.77 | 39.0 | 0.16 | 18.63 | 0.02 | 1.031 | 19.77 | 7.45 | 17.4 | 81.8 | 0.8 | -5.68 | 0.58 | 0.59 | — | 4.3 | 0.003 | 0.82 | 0.0 | 0.04 | 15.37 | 0.00 | 2.074 | 15.31 | 0.12 | 11.4 | 88.5 | 0.0 | -3.31 | 1.14 | 0.61 | 0.58 | — | 39071 | 4887 | 18 | 13 | 6 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2024-04-15 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✔ | 7WXi | 32880 | 2024-04-06 | 2022-02-14 | 4.2 | 4.31 | 4.10 | 4.2 | 0.008 | 0.87 | 0.0 | 0.05 | 15.47 | 0.00 | 2.148 | 24.87 | 0.58 | 18.2 | 81.8 | 0.0 | -4.77 | 0.78 | 0.81 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 13.65 | 0.00 | 2.171 | 14.12 | 0.00 | 7.2 | 92.8 | 0.0 | -0.93 | 1.26 | 0.77 | 0.79 | — | 6522 | 862 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oF3 | 20041 | 2024-04-07 | 2019-03-28 | 3.0 | 2.82 | — | 3.7 | 0.008 | 1.59 | 2.0 | 0.08 | 14.84 | 0.01 | 2.058 | 3.96 | 0.85 | 16.1 | 81.9 | 2.0 | -4.36 | 0.70 | 0.65 | 0.87 | 3.5 | 0.004 | 0.87 | 0.0 | 0.04 | 17.61 | 0.01 | 1.934 | 10.65 | 3.31 | 9.1 | 90.7 | 0.1 | -0.26 | 1.24 | 0.80 | 0.83 | 1.54 | 11096 | 1430 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6F0X | 4166 | 2024-04-10 | 2017-11-20 | 4.6 | 4.72 | — | 4.6 | 0.007 | 0.97 | 0.0 | 0.05 | 10.34 | 0.01 | 1.884 | 34.29 | 0.00 | 17.6 | 81.9 | 0.5 | -5.29 | 0.76 | 0.77 | — | 4.6 | 0.003 | 0.77 | 0.0 | 0.05 | 13.21 | 0.00 | 2.094 | 20.59 | 0.05 | 8.6 | 91.2 | 0.2 | -1.43 | 0.96 | 0.78 | 0.78 | — | 20450 | 2589 | 14 | 0 | 5 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2024-04-09 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 15.31 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.003 | 0.88 | 0.0 | 0.04 | 18.43 | 0.01 | 2.050 | 20.71 | 3.46 | 15.9 | 83.7 | 0.4 | -4.02 | 1.62 | 0.60 | 0.66 | 0.51 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2024-04-05 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.87 | 0.0 | 0.04 | 16.56 | 0.01 | 2.215 | 13.32 | 7.07 | 12.1 | 87.2 | 0.7 | -4.25 | 0.80 | 0.55 | 0.66 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oLE | 12979 | 2024-04-12 | 2021-05-19 | 3.41 | 4.34 | 3.59 | 3.9 | 0.013 | 1.74 | 25.0 | 0.10 | 15.12 | 0.01 | 1.371 | 42.05 | 0.38 | 17.2 | 81.9 | 0.8 | -5.68 | 0.55 | 0.26 | -0.19 | 3.6 | 0.004 | 0.89 | 1.0 | 0.04 | 15.98 | 0.00 | 2.082 | 21.90 | 2.42 | 10.8 | 89.0 | 0.2 | -1.97 | 1.93 | 0.77 | 0.76 | 1.06 | 26995 | 2899 | 14 | 0 | 1129 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2024-04-07 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.009 | 1.41 | 2.0 | 0.06 | 24.00 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 16.97 | 0.01 | 2.125 | 15.51 | 3.61 | 11.4 | 87.9 | 0.8 | -1.21 | 1.76 | 0.54 | 0.77 | 1.51 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7o7o | 12751 | 2024-04-17 | 2021-04-13 | 4.8 | 5.79 | — | 6.6 | 0.011 | 1.24 | 5.0 | 0.06 | 16.35 | 0.02 | 1.564 | 17.48 | 0.43 | 17.4 | 82.1 | 0.5 | -5.42 | 0.81 | 0.69 | — | 6.6 | 0.003 | 0.86 | 0.0 | 0.05 | 14.55 | 0.01 | 2.094 | 27.68 | 0.02 | 14.3 | 85.6 | 0.1 | -3.63 | 1.33 | 0.81 | 0.71 | — | 42642 | 5376 | 20 | 0 | 52 | 0 | 0 | logfile |
✔ | 6UXV | 20933 | 2024-04-09 | 2019-11-08 | 4.7 | 4.98 | — | 4.7 | 0.006 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 1.532 | 29.48 | 0.48 | 17.7 | 82.1 | 0.3 | -5.06 | 0.80 | 0.81 | — | 4.7 | 0.003 | 0.77 | 0.0 | 0.04 | 14.37 | 0.00 | 2.144 | 16.16 | 0.06 | 10.8 | 89.1 | 0.1 | -0.84 | 0.73 | 0.79 | 0.79 | — | 16649 | 1920 | 15 | 0 | 273 | 0 | 0 | logfile |
✔ | 5X6o | 6708 | 2024-04-10 | 2017-02-22 | 3.9 | 4.03 | — | 3.9 | 0.007 | 1.01 | 4.0 | 0.06 | 11.26 | 0.00 | 1.863 | 21.05 | 1.64 | 15.8 | 82.1 | 2.2 | -5.44 | 0.60 | 0.72 | 1.68 | 3.9 | 0.003 | 0.78 | 0.0 | 0.04 | 14.77 | 0.00 | 2.176 | 10.42 | 2.99 | 8.4 | 90.3 | 1.3 | -0.62 | 0.82 | 0.62 | 0.76 | 0.92 | 19309 | 2701 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JVM | 36677 | 2024-04-05 | 2023-06-28 | 3.86 | 4.13 | 3.89 | 3.9 | 0.006 | 1.08 | 1.0 | 0.06 | 14.54 | 0.01 | 2.138 | 27.03 | 1.75 | 16.3 | 82.1 | 1.6 | -3.56 | 0.64 | 0.54 | 0.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3726 | 498 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND8 | 3624 | 2024-04-14 | 2017-03-07 | 3.7 | 3.81 | — | 3.7 | 0.009 | 1.03 | 1.0 | 0.05 | 22.75 | 0.01 | 1.019 | 7.55 | 0.73 | 17.3 | 82.1 | 0.6 | -5.61 | 0.77 | 0.77 | 1.17 | 3.7 | 0.003 | 0.65 | 0.0 | 0.03 | 22.63 | 0.00 | 1.986 | 15.96 | 5.11 | 11.3 | 88.6 | 0.1 | -2.63 | 1.29 | 0.80 | 0.82 | 1.24 | 141043 | 5462 | 52 | 4568 | 0 | 0 | 0 | logfile |
✔ | 6SJ6 | 10212 | 2024-04-11 | 2019-08-12 | 3.23 | 3.28 | — | 3.2 | 0.010 | 1.05 | 0.0 | 0.06 | 23.89 | 0.01 | 1.886 | 4.33 | 0.14 | 17.7 | 82.2 | 0.2 | -6.09 | 0.78 | 0.78 | 3.43 | 3.2 | 0.005 | 0.77 | 0.0 | 0.04 | 23.53 | 0.01 | 1.849 | 8.52 | 4.64 | 13.2 | 86.8 | 0.0 | -3.89 | 2.00 | 0.80 | 0.80 | 2.38 | 78296 | 2611 | 27 | 2697 | 59 | 0 | 0 | logfile |
✔ | 7AKV | 11814 | 2024-04-05 | 2020-10-02 | 3.6 | 3.04 | 3.41 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.005 | 76.42 | 0.16 | 17.7 | 82.2 | 0.1 | -4.19 | 0.81 | 0.82 | 2.44 | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 16.24 | 0.00 | 2.025 | 69.69 | 3.26 | 14.1 | 85.8 | 0.1 | -3.41 | 0.30 | 0.81 | 0.82 | 1.88 | 6201 | 799 | 2 | 0 | 0 | 0 | 245 | logfile |
✔ | 8GAF | 29896 | 2024-04-12 | 2023-02-22 | 3.64 | 4.04 | — | 3.8 | 0.002 | 0.43 | 0.0 | 0.04 | 18.19 | 0.00 | 2.133 | 11.26 | 2.92 | 15.4 | 82.2 | 2.4 | -3.53 | 0.71 | 0.52 | 0.12 | 3.8 | 0.007 | 1.03 | 1.0 | 0.05 | 19.66 | 0.01 | 1.763 | 44.17 | 3.86 | 12.6 | 87.2 | 0.2 | -2.91 | 1.85 | 0.77 | 0.69 | 0.36 | 24582 | 2961 | 13 | 43 | 0 | 0 | 0 | logfile |
✔ | 7W68 | 32326 | 2024-04-12 | 2021-12-01 | 4.4 | 3.35 | — | 2.6 | 0.013 | 1.73 | 35.0 | 0.15 | 17.02 | 0.01 | 1.130 | 27.44 | 2.99 | 15.1 | 82.3 | 2.6 | -4.91 | 0.68 | 0.67 | — | 2.2 | 0.003 | 0.84 | 0.0 | 0.05 | 14.39 | 0.01 | 2.100 | 20.85 | 0.07 | 10.7 | 88.9 | 0.3 | -2.27 | 1.09 | 0.67 | 0.66 | — | 25833 | 3249 | 6 | 0 | 0 | 0 | 0 | logfile |